DY258639

Overview
NameDY258639
Unique NameDY258639
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length896
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA14_ORYSJ (Auxin-responsive protein IAA14 OS=Oryza sativa subsp. japonica GN=IAA14 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.223e-23
Identity = 58/146 (39.73%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  259 TPATKAQVVGWPPVRAYRKNAM-------------------------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEA 621
            +PA+K QVVGWPPV +YR++                           KG   +VKV+++GAPYLRKVDL +Y  Y+EL  AL+ +F   +            + +   +   YEDKDGD ML GDVPW MF+ SCK++R+ + SEA
Sbjct:   58 SPASKVQVVGWPPVGSYRRSTFQSSSSSTAAAAKGKGGGETDQGRKNKGGGLYVKVSMDGAPYLRKVDLRMYGGYRELRDALDALFGCFSADA---------SASAAHFAVAYEDKDGDLMLAGDVPWDMFISSCKKLRIMRGSEA 194          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.791e-23
Identity = 72/207 (34.78%), Postives = 102/207 (49.28%), Query Frame = 1
Query:  157 GTKRGFLETVDLNLMGSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAM----------------------------------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVN-------ERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAKN 654
            G +   L   D   +GS    K   ++ + A ++ P + +QVVGWPP+ ++R N++                                  K    F+KV ++G    RKVDL  + SY+ L   LEDMF F T    V          +++D  +  E+V TYEDK+GDWMLVGDVPW+MF+ S KR+R+ K+SEA GLA R    N
Sbjct:   40 GERGRLLTAKDFPSVGS----KRAADSASHAGSSPPRSSSQVVGWPPIGSHRMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVTKKVNGKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMF-FRTNPGTVGLTSQFTKPLRLLDGSS--EFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQEPN 239          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA12_ARATH (Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.441e-22
Identity = 67/182 (36.81%), Postives = 94/182 (51.65%), Query Frame = 1
Query:  259 TPATKAQVVGWPPVRAYRKN------AMKGS------------------------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLT---IRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAKNSSKS*RMNNRI 687
            +P   +QVVGWPP+  +R N      AMK +                                FVKV ++G    RKVD+  + SY+ L   LE+MF  +T    R  V   +++D  +  ++V TYEDK+GDWMLVGDVPW+MF+ S KR+R+  +SEA GLAPR   +   K  + NN +
Sbjct:   63 SPPRSSQVVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKKVVKNDELKDVSMKVNPKVQGLGFVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPLRLLDGSS--DFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPR---RQEQKDRQRNNPV 239          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA10_ORYSJ (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.209e-22
Identity = 67/175 (38.29%), Postives = 91/175 (52.00%), Query Frame = 1
Query:  250 STTTPATKAQ--------VVGWPPVRAYRKNAMKGSCK---------------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI----RNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPR 639
            +TT+P T A         VVGWPP+R +R N++    K                                 +VKV ++G    RKVDL  + SY+ L  ALE MF+  +I     ++ N  K++DN    EY  TYED+DGDWMLVGDVPW+MFV S KR+R+ ++S+A GL  R
Sbjct:   94 ATTSPGTVASGHPHSSFGVVGWPPIRQFRMNSLFNQAKENTSETDTKKTATNESDVQKDKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCASHNTNSLKLLDN--SAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDANGLGQR 266          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA10_ORYSI (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.209e-22
Identity = 67/175 (38.29%), Postives = 91/175 (52.00%), Query Frame = 1
Query:  250 STTTPATKAQ--------VVGWPPVRAYRKNAMKGSCK---------------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI----RNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPR 639
            +TT+P T A         VVGWPP+R +R N++    K                                 +VKV ++G    RKVDL  + SY+ L  ALE MF+  +I     ++ N  K++DN    EY  TYED+DGDWMLVGDVPW+MFV S KR+R+ ++S+A GL  R
Sbjct:   94 ATTSPGTVASGHPHSSFGVVGWPPIRQFRMNSLFNQAKENTSETDTKKTATNESDVQKDKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCASHNTNSLKLLDN--SAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDANGLGQR 266          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA26_ORYSJ (Auxin-responsive protein IAA26 OS=Oryza sativa subsp. japonica GN=IAA26 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.474e-22
Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 1
Query:  265 ATKAQVVGWPPVRAYRKNAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLA 633
            A + +  G PP      ++M  +  FVKV+++G PYLRKVD+  Y  Y EL+ AL DMF   TI        ++D     E+   YED DGDWMLVGDVPW+MFV SCKR+R+ ++ EA GL+
Sbjct:   26 ARRGRKNGHPPP----SSSMIQAAYFVKVSMDGTPYLRKVDVAAYGDYLELVEALNDMFYCSTIG-------LMDGYGEWEHAVVYEDGDGDWMLVGDVPWEMFVSSCKRMRVMRACEARGLS 137          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA11_ARATH (Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21
Identity = 64/161 (39.75%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  265 ATKAQVVGWPPVRAYRKNAMKGSCK-----------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNER--------KII-DNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLA 633
            AT  QVVGWPP+R YR N+M    K                             FVKV ++G P  RK+DL  +  Y+ L + LE+MF    + +   E         KI+ D  +G+  V TYEDK+GDWMLVGDVPW MF+ S +R+R+ K+SEA G A
Sbjct:   84 ATSGQVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSGL--VLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATGKA 242          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA18_ORYSJ (Auxin-responsive protein IAA18 OS=Oryza sativa subsp. japonica GN=IAA18 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.923e-20
Identity = 76/218 (34.86%), Postives = 103/218 (47.25%), Query Frame = 1
Query:  157 GTKRGFLETVDLNLMG---SSNDNKHC-------EEN---------------DAMASTTTPATKAQ---VVGWPPVRAYRKNAMKGS--------------------CK---FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLTIRNHVN---------ERKIIDNV---NGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSE 618
            G KRGF   V   L G   S  D + C       +EN                A A ++ P  +     VVGWPP+R++R+N   GS                    CK    VK+ ++G P  RKVDL+IY SYQ+L SA+E++F  FL  +  ++         E KI   +    GV Y   YED DGD ML GD+PWK+FV + KR+R+ + SE
Sbjct:   99 GAKRGFFAIVGATLEGYNQSHRDTEECGKELTLGDENMAGERKKGCCPSPPCSAAAHSSNPQGRGAIPPVVGWPPIRSFRRNLTNGSSFKQSPERQNDEADDKAKPICKKRPLVKINMDGIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIFSGLLDGTGV-YTLVYEDNDGDRMLAGDIPWKVFVSTVKRLRVMRRSE 315          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA9_ORYSJ (Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica GN=IAA9 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.665e-19
Identity = 61/149 (40.94%), Postives = 79/149 (53.02%), Query Frame = 1
Query:  163 KRGFLETVDLNLMGSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVP--TYEDKDGDWMLVGDVPWKMFVESCKRVRL 603
            KRGF E     L+   +D   C  +D          K  VVGWPPV + R+    G   +VKV  EG    RKVDL ++ SY EL + L  MF      +H  E+K+ ++ +G    P  TYED DGDWMLVGDVPW  F  S KR+++
Sbjct:   42 KRGFREAFQETLL-LFDDGSCCNTSD----DDCRRRKKTVVGWPPVSSARRAC--GGANYVKVKKEGDAIGRKVDLALHSSYDELAATLARMFP---TNDHQGEKKMANDDHGDAAGPVVTYEDGDGDWMLVGDVPWDDFARSVKRLKI 180          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA28_ARATH (Auxin-responsive protein IAA28 OS=Arabidopsis thaliana GN=IAA28 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.262e-18
Identity = 56/139 (40.29%), Postives = 81/139 (58.27%), Query Frame = 1
Query:  274 AQVVGWPPVRAYRKNA---MKGSCK----------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAK 651
            A VVGWPPVR+ R+N    +K   K          +VK+ +EG P  RKV+L  Y++YQ+L  A++ +FS          +K   ++N  +Y   YED +GD +LVGDVPW+MFV + KR+ + K+S A  L+PR   K
Sbjct:   47 APVVGWPPVRSSRRNLTAQLKEEMKKKESDEEKELYVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLFS----------KKDSWDLNR-QYTLVYEDTEGDKVLVGDVPWEMFVSTVKRLHVLKTSHAFSLSPRKHGK 174          
The following BLAST results are available for this feature:
BLAST of DY258639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA14_ORYSJ2.223e-2339.73Auxin-responsive protein IAA14 OS=Oryza sativa sub... [more]
IAA13_ARATH3.791e-2334.78Auxin-responsive protein IAA13 OS=Arabidopsis thal... [more]
IAA12_ARATH1.441e-2236.81Auxin-responsive protein IAA12 OS=Arabidopsis thal... [more]
IAA10_ORYSJ3.209e-2238.29Auxin-responsive protein IAA10 OS=Oryza sativa sub... [more]
IAA10_ORYSI3.209e-2238.29Auxin-responsive protein IAA10 OS=Oryza sativa sub... [more]
IAA26_ORYSJ5.474e-2246.34Auxin-responsive protein IAA26 OS=Oryza sativa sub... [more]
IAA11_ARATH1.220e-2139.75Auxin-responsive protein IAA11 OS=Arabidopsis thal... [more]
IAA18_ORYSJ3.923e-2034.86Auxin-responsive protein IAA18 OS=Oryza sativa sub... [more]
IAA9_ORYSJ5.665e-1940.94Auxin-responsive protein IAA9 OS=Oryza sativa subs... [more]
IAA28_ARATH1.262e-1840.29Auxin-responsive protein IAA28 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258639 ID=DY258639; Name=DY258639; organism=Citrus clementina; type=EST; length=896bp
CATAATTTTGTTAACACACTTCTCCACATAGCAAAGCAAAATTTGGCAAC
CTTAGAGAAAATGTCCCCGGAAAAAGTTAATCATTTGCCGGAATCCGACA
CGAAGCTCACGTTAGGCTTACCCGGCGGCGGCGGCGAGTGTCACCGGACG
AAAGCCGGCACGAAGCGTGGCTTCTTAGAGACCGTTGATCTAAACCTCAT
GGGCTCAAGCAATGATAACAAACATTGCGAAGAGAACGATGCAATGGCCT
CGACTACAACCCCAGCAACCAAGGCACAAGTGGTGGGGTGGCCGCCGGTG
AGAGCATATCGGAAAAATGCTATGAAGGGCAGCTGCAAATTTGTAAAGGT
GGCAGTTGAAGGAGCTCCATATCTAAGAAAAGTTGACCTTGAGATATACC
ATAGTTATCAAGAACTCTTGAGTGCTTTAGAGGATATGTTCTCATTCTTG
ACTATAAGGAACCACGTAAATGAGAGAAAGATTATAGATAACGTAAATGG
AGTTGAATATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTAG
TTGGAGATGTGCCATGGAAAATGTTTGTTGAATCTTGCAAGCGAGTAAGG
TTGACGAAAAGCTCAGAAGCAATTGGGTTAGCTCCAAGAACACCTGCAAA
AAATTCAAGCAAGAGTTGAAGAATGAATAACAGAATAAGGGCCTTATTGT
ATAAGGAGGCATTCCTGGAGTGACAATTAATGGCTGTACAGAGGCTTTTG
ATTGATTTGAATTTTAGTACACACCACTGTGTTTTCTTAGGAGAGTTTTG
ACCATCAGATTTTGATCAGTTGATATTAGAGAAATAAGGAGAGCCCTGCT
GCCTGTAATTATATATCATATAATATCAGAAGTTACTTACGGGAAT
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