DY258639

Overview
NameDY258639
Unique NameDY258639
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length896
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA26_ARATH (Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.262e-18
Identity = 58/149 (38.93%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  280 VVGWPPVRAYRKNAMKGSCK-----------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLTIRNHVN-----ERKIIDNVNGV-EYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSE 618
            VVGWPPVR++RKN    S                               FVK+ ++G P  RKVDL  Y+SY++L   ++ +F   L  +  ++     E+ II  ++G  E+  TYED +GD MLVGDVPW+MFV S KR+R+ KSSE
Sbjct:  104 VVGWPPVRSFRKNLASTSSSKLGNESSHGGQINKSDDGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDGQGEEKPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSE 252          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA6_ORYSJ (Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica GN=IAA6 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.068e-17
Identity = 72/228 (31.58%), Postives = 101/228 (44.30%), Query Frame = 1
Query:  148 TKAGTKRGFLETVDLNLMGSSNDNKHC----------EENDAMASTT-------------TPATKAQ-------------VVGWPPVRAYRKNAMKGS--------------------CK---FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLTIRNHVNERKIIDN----------VNGV-EYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSE 618
            T  G KRGF++TV+    G ++  +            EE  A  S                PAT A+             VVGWPP+R++R+N    S                    CK    VK+ ++G P  RK+DL  Y+SY  L SA++ +F  FL  +      +I             ++G  EY   YED +GD MLVGDVPWK+FV + KR+R+ +SSE
Sbjct:   96 TTTGAKRGFIDTVEDKTEGYNDQKQQARAGCGKELAVEEMIAAVSERKKGCCPPPPPPHGAPATPARNRPQTQGRGAAAPVVGWPPIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA31_ARATH (Auxin-responsive protein IAA31 OS=Arabidopsis thaliana GN=IAA31 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.068e-17
Identity = 51/132 (38.64%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  250 STTTPATKAQVVG---WPPVRAYRKNAMKG---------SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTK 609
            S T P+T  Q      WPP+++  ++ +KG         +  FVKV +EG P  RK+DL ++  Y+ LL  L  MF    I  +  +RK         +V TYEDKDGDWM+VGD+PW MF+E+ +R+++T+
Sbjct:   32 SLTFPSTSPQREARQDWPPIKSRLRDTLKGRRLLRRGDDTSLFVKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSIICGN-RDRK--------HHVLTYEDKDGDWMMVGDIPWDMFLETVRRLKITR 154          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA18_ARATH (Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.395e-17
Identity = 62/170 (36.47%), Postives = 83/170 (48.82%), Query Frame = 1
Query:  247 ASTTTPATK----AQVVGWPPVRAYRKNAMKGSCK----------------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH-----VNERKIIDNV---NGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSE 618
            +ST T + K      VVGWPPVR++RKN   GS                                    FVK+ + G P  RKVDL  ++SY++L   ++ +F  L          + + K I  +   NG EY  TYED +GD MLVGDVPW+MFV S KR+R+ K+SE
Sbjct:   82 SSTKTTSHKRTAPGPVVGWPPVRSFRKNLASGSSSKLGNDSTTSNGVTLKNQKCDAAAKTTEPKRQGGMFVKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLLAAQRDFPSSIEDEKPITGLLDGNG-EYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSE 250          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA7_ORYSJ (Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.380e-17
Identity = 59/190 (31.05%), Postives = 90/190 (47.37%), Query Frame = 1
Query:  151 KAGTKRGFLETVDLNLMGSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGS--------------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI--------------RNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSE 618
            KA   +G  E  + +   ++ +N     N+    T +P+T   VVGWPPVR +R+N    S                      F+K+ ++G P  RK+DL  + SY++L  A++ +F  L                +  V    ++D     EY   YED +GD +LVGDVPW MFV S KR+R+ K+S+
Sbjct:   98 KANKNKGSPEEEEAHPPPATGNNALASNNNGCFQTRSPSTP--VVGWPPVRTFRRNLATSSKASLELQNGKKAAKAEEIKRAPFIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTG--EYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA2_ORYSJ (Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica GN=IAA2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.380e-17
Identity = 54/153 (35.29%), Postives = 74/153 (48.37%), Query Frame = 1
Query:  265 ATKAQVVGWPPVRAYRKNAMKGSCK-----------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRN------HVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSE 618
            A  A VVGWPPVR++R+N    S                               FVK+ ++G P  RKVDL  Y  Y +L +A++ +F  L            +     + V G EY   YED +GD MLVGDVPW+MF+ + KR+R+ KSS+
Sbjct:   66 AAAAPVVGWPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRKVDLAAYGGYAQLSAAVDKLFRGLLAAQSAAADGEADAAAAGEMVGGGEYTLVYEDDEGDRMLVGDVPWQMFIATAKRLRVLKSSD 218          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA25_ORYSJ (Auxin-responsive protein IAA25 OS=Oryza sativa subsp. japonica GN=IAA25 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.380e-17
Identity = 63/182 (34.62%), Postives = 86/182 (47.25%), Query Frame = 1
Query:  214 DNKHCEEND-AMASTTTPATKAQVVGWPPVRAYRKNAM--------------------------------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLT--IRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAK 651
            +  H   N+ A+      A+ AQ+VGWPPVRA+RKN                                    S  FVKV +EG    RK+DL+ + SY  L  AL+ MF  FL+  I    NE + ++  +   YV  YED +GD MLVGDVPW++F+ S KR+ + +        PR  AK
Sbjct:   70 EQAHQRPNECAVQRENRAASSAQLVGWPPVRAFRKNLSTPKPADADDLMNKVKLCSDEGHGSRCAAQERRSSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQQMEEGSKKRYVLVYEDNEGDRMLVGDVPWELFIASVKRLYIAQD-------PRVHAK 244          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA20_ORYSJ (Auxin-responsive protein IAA20 OS=Oryza sativa subsp. japonica GN=IAA20 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.925e-17
Identity = 55/149 (36.91%), Postives = 74/149 (49.66%), Query Frame = 1
Query:  163 KRGFLETVDLNLMGSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCK--FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRL 603
            KRGF E +        ND+ +    D  +       + ++VGWPPV+   +    G C   +VKV +EG    RK+DL I  SY ELL  L  MF         N+    D      Y  TYED +GDWM VGDVPW+ F +S KR+++
Sbjct:   40 KRGFEEALGGFKTDDDNDDGNGRGGDGDSDGEMGNKRRKLVGWPPVKCLHRRR-DGGCGGGYVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFP------STNQEDGHDRRRRHPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKI 181          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA10_ARATH (Auxin-responsive protein IAA10 OS=Arabidopsis thaliana GN=IAA10 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.631e-16
Identity = 64/207 (30.92%), Postives = 89/207 (43.00%), Query Frame = 1
Query:  166 RGFLETVDLNLMGSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCK---------------------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-------------SFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGL 630
            R  L +   +L   S   +  + + A AS    AT+   VGWPP+R YR N++    K                                        VKV ++G    RKVDL    SY  L   L+ MF              + TI+      K++D  +  EY+ TY+DKDGDWMLVGDVPW+MF+ S  R+R+ K+S   G+
Sbjct:   59 RSSLSSSSSSLTRESGTKRSADSSPAAASN---ATRQVAVGWPPLRTYRINSLVNQAKSLATEGGLSSGIQKETTKSVVVAAKNDDACFIKSSRTSMLVKVTMDGVIIGRKVDLNALDSYAALEKTLDLMFFQIPSPVTRSNTQGYKTIKETCTS-KLLDGSS--EYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTSIGAGV 259          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA16_ORYSJ (Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.800e-15
Identity = 53/157 (33.76%), Postives = 76/157 (48.41%), Query Frame = 1
Query:  274 AQVVGWPPVRAYRKNAMKGS---------------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH-----------------VNERK----IIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSE 618
            A VVGWPPVR++R+N    S                      +FVKV ++G P  RKVDL  +  Y EL +A++ +F  L                        E +    ++D  +G EY   YED +GD MLVGDVPW MF+ + +R+R+ +SS+
Sbjct:   56 APVVGWPPVRSFRRNLASSSSSSKPPRGGRDAAAAATGGKVARFVKVNMDGVPIGRKVDLAAHGGYGELSAAVDRLFRGLLAAQRDPTMATAAAAAAAGESCTGEEEAIAGLLDGGSG-EYTLVYEDDEGDQMLVGDVPWNMFIAAARRLRVLRSSD 211          
The following BLAST results are available for this feature:
BLAST of DY258639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA26_ARATH1.262e-1838.93Auxin-responsive protein IAA26 OS=Arabidopsis thal... [more]
IAA6_ORYSJ1.068e-1731.58Auxin-responsive protein IAA6 OS=Oryza sativa subs... [more]
IAA31_ARATH1.068e-1738.64Auxin-responsive protein IAA31 OS=Arabidopsis thal... [more]
IAA18_ARATH1.395e-1736.47Auxin-responsive protein IAA18 OS=Arabidopsis thal... [more]
IAA7_ORYSJ2.380e-1731.05Auxin-responsive protein IAA7 OS=Oryza sativa subs... [more]
IAA2_ORYSJ2.380e-1735.29Auxin-responsive protein IAA2 OS=Oryza sativa subs... [more]
IAA25_ORYSJ2.380e-1734.62Auxin-responsive protein IAA25 OS=Oryza sativa sub... [more]
IAA20_ORYSJ6.925e-1736.91Auxin-responsive protein IAA20 OS=Oryza sativa sub... [more]
IAA10_ARATH2.631e-1630.92Auxin-responsive protein IAA10 OS=Arabidopsis thal... [more]
IAA16_ORYSJ3.800e-1533.76Auxin-responsive protein IAA16 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258639 ID=DY258639; Name=DY258639; organism=Citrus clementina; type=EST; length=896bp
CATAATTTTGTTAACACACTTCTCCACATAGCAAAGCAAAATTTGGCAAC
CTTAGAGAAAATGTCCCCGGAAAAAGTTAATCATTTGCCGGAATCCGACA
CGAAGCTCACGTTAGGCTTACCCGGCGGCGGCGGCGAGTGTCACCGGACG
AAAGCCGGCACGAAGCGTGGCTTCTTAGAGACCGTTGATCTAAACCTCAT
GGGCTCAAGCAATGATAACAAACATTGCGAAGAGAACGATGCAATGGCCT
CGACTACAACCCCAGCAACCAAGGCACAAGTGGTGGGGTGGCCGCCGGTG
AGAGCATATCGGAAAAATGCTATGAAGGGCAGCTGCAAATTTGTAAAGGT
GGCAGTTGAAGGAGCTCCATATCTAAGAAAAGTTGACCTTGAGATATACC
ATAGTTATCAAGAACTCTTGAGTGCTTTAGAGGATATGTTCTCATTCTTG
ACTATAAGGAACCACGTAAATGAGAGAAAGATTATAGATAACGTAAATGG
AGTTGAATATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTAG
TTGGAGATGTGCCATGGAAAATGTTTGTTGAATCTTGCAAGCGAGTAAGG
TTGACGAAAAGCTCAGAAGCAATTGGGTTAGCTCCAAGAACACCTGCAAA
AAATTCAAGCAAGAGTTGAAGAATGAATAACAGAATAAGGGCCTTATTGT
ATAAGGAGGCATTCCTGGAGTGACAATTAATGGCTGTACAGAGGCTTTTG
ATTGATTTGAATTTTAGTACACACCACTGTGTTTTCTTAGGAGAGTTTTG
ACCATCAGATTTTGATCAGTTGATATTAGAGAAATAAGGAGAGCCCTGCT
GCCTGTAATTATATATCATATAATATCAGAAGTTACTTACGGGAAT
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