DY258641 | Citrus Genome Database

Overview


Name	DY258641
Unique Name	DY258641
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1314

Libraries


Library Name	Type
AbsDev1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_SULSO (V-type ATP synthase alpha chain OS=Sulfolobus solfataricus GN=atpA PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.496e-11
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            +RLA  Y+RAG+VK +G P+R G VT+  AVSPP  +F++ VTS
Sbjct:  361 SRLAEYYERAGRVKTIGNPERFGSVTVASAVSPPGGDFTEPVTS 404

HSP 2 Score: 38.5058 bits (88), Expect = 2.496e-11
Identity = 17/42 (40.48%), Postives = 27/42 (64.29%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F ++GY+  ++ DSTSRW EAL  +  R+ +MPA   +  +L
Sbjct:  318 FRDQGYDTLLVADSTSRWAEALRDLGGRMEEMPAEEGFPSYL 359

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_SULIY (V-type ATP synthase alpha chain OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=atpA PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.496e-11
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            +RLA  Y+RAG+VK +G P+R G VT+  AVSPP  +F++ VTS
Sbjct:  361 SRLAEYYERAGRVKTVGKPERFGSVTVASAVSPPGGDFTEPVTS 404

HSP 2 Score: 38.5058 bits (88), Expect = 2.496e-11
Identity = 17/42 (40.48%), Postives = 27/42 (64.29%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F ++GY+  ++ DSTSRW EAL  +  R+ +MPA   +  +L
Sbjct:  318 FRDQGYDTLLVADSTSRWAEALRDLGGRMEEMPAEEGFPSYL 359

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_SULIN (V-type ATP synthase alpha chain OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=atpA PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.496e-11
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            +RLA  Y+RAG+VK +G P+R G VT+  AVSPP  +F++ VTS
Sbjct:  361 SRLAEYYERAGRVKTVGKPERFGSVTVASAVSPPGGDFTEPVTS 404

HSP 2 Score: 38.5058 bits (88), Expect = 2.496e-11
Identity = 17/42 (40.48%), Postives = 27/42 (64.29%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F ++GY+  ++ DSTSRW EAL  +  R+ +MPA   +  +L
Sbjct:  318 FRDQGYDTLLVADSTSRWAEALRDLGGRMEEMPAEEGFPSYL 359

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_SULIM (V-type ATP synthase alpha chain OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=atpA PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.496e-11
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            +RLA  Y+RAG+VK +G P+R G VT+  AVSPP  +F++ VTS
Sbjct:  361 SRLAEYYERAGRVKTVGKPERFGSVTVASAVSPPGGDFTEPVTS 404

HSP 2 Score: 38.5058 bits (88), Expect = 2.496e-11
Identity = 17/42 (40.48%), Postives = 27/42 (64.29%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F ++GY+  ++ DSTSRW EAL  +  R+ +MPA   +  +L
Sbjct:  318 FRDQGYDTLLVADSTSRWAEALRDLGGRMEEMPAEEGFPSYL 359

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_SULIL (V-type ATP synthase alpha chain OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=atpA PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.496e-11
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            +RLA  Y+RAG+VK +G P+R G VT+  AVSPP  +F++ VTS
Sbjct:  361 SRLAEYYERAGRVKTVGKPERFGSVTVASAVSPPGGDFTEPVTS 404

HSP 2 Score: 38.5058 bits (88), Expect = 2.496e-11
Identity = 17/42 (40.48%), Postives = 27/42 (64.29%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F ++GY+  ++ DSTSRW EAL  +  R+ +MPA   +  +L
Sbjct:  318 FRDQGYDTLLVADSTSRWAEALRDLGGRMEEMPAEEGFPSYL 359

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_SULIK (V-type ATP synthase alpha chain OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=atpA PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.496e-11
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            +RLA  Y+RAG+VK +G P+R G VT+  AVSPP  +F++ VTS
Sbjct:  361 SRLAEYYERAGRVKTVGKPERFGSVTVASAVSPPGGDFTEPVTS 404

HSP 2 Score: 38.5058 bits (88), Expect = 2.496e-11
Identity = 17/42 (40.48%), Postives = 27/42 (64.29%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F ++GY+  ++ DSTSRW EAL  +  R+ +MPA   +  +L
Sbjct:  318 FRDQGYDTLLVADSTSRWAEALRDLGGRMEEMPAEEGFPSYL 359

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_SULIA (V-type ATP synthase alpha chain OS=Sulfolobus islandicus (strain M.16.27) GN=atpA PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.496e-11
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            +RLA  Y+RAG+VK +G P+R G VT+  AVSPP  +F++ VTS
Sbjct:  361 SRLAEYYERAGRVKTVGKPERFGSVTVASAVSPPGGDFTEPVTS 404

HSP 2 Score: 38.5058 bits (88), Expect = 2.496e-11
Identity = 17/42 (40.48%), Postives = 27/42 (64.29%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F ++GY+  ++ DSTSRW EAL  +  R+ +MPA   +  +L
Sbjct:  318 FRDQGYDTLLVADSTSRWAEALRDLGGRMEEMPAEEGFPSYL 359

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_SULTO (V-type ATP synthase alpha chain OS=Sulfolobus tokodaii GN=atpA PE=1 SV=3)

HSP 1 Score: 50.447 bits (119), Expect = 2.496e-11
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            +RLA  Y+RAG+V  LG P+R G VTI  AVSPP  +F++ VTS
Sbjct:  362 SRLAEYYERAGRVIALGNPERYGSVTIASAVSPPGGDFTEPVTS 405

HSP 2 Score: 40.0466 bits (92), Expect = 2.496e-11
Identity = 18/42 (42.86%), Postives = 28/42 (66.67%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F ++GY+V ++ DSTSRW EAL  +  R+ +MPA   +  +L
Sbjct:  319 FRDQGYDVLLVADSTSRWAEALRDLGGRMEEMPAEEGFPSYL 360

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_METTH (V-type ATP synthase alpha chain OS=Methanobacterium thermoautotrophicum GN=atpA PE=3 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 2.497e-11
Identity = 23/56 (41.07%), Postives = 35/56 (62.50%), Query Frame = 2

Query:  344 DCCIEPVIIRQK*FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            + C+   I   + F + GY+V++M DSTSRW EA+ +IS RL +MP    Y  +L+
Sbjct:  305 EACVYTGITIAEYFRDMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLA 360

HSP 2 Score: 43.8986 bits (102), Expect = 2.497e-11
Identity = 20/43 (46.51%), Postives = 30/43 (69.77%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVT 641
            +RLA  Y+RAG+V  +G+  +   V++VGAVSPP  + S+ VT
Sbjct:  361 SRLAQFYERAGRVTTIGSEDKIASVSVVGAVSPPGGDLSEPVT 403

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_METS3 (V-type ATP synthase alpha chain OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=atpA PE=3 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 2.497e-11
Identity = 22/56 (39.29%), Postives = 36/56 (64.29%), Query Frame = 2

Query:  344 DCCIEPVIIRQK*FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            + C+   I   + + ++GY+V++M DSTSRW EA+ +IS RL +MP    Y  +L+
Sbjct:  305 EACVYTGITIAEYYRDQGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLA 360

HSP 2 Score: 44.2838 bits (103), Expect = 2.497e-11
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVT 641
            +RLA  Y+RAG+V  +G       +T+VGAVSPP  + S+ VT
Sbjct:  361 SRLAQFYERAGRVNTIGTTSDVASITVVGAVSPPGGDLSEPVT 403

The following BLAST results are available for this feature:

BLAST of DY258641 vs. ExPASy Swiss-Prot

BLAST of DY258641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121


Match Name	E-value	Identity	Description
VATA_SULSO	2.496e-11	54.55	V-type ATP synthase alpha chain OS=Sulfolobus solf...	[more]
VATA_SULIY	2.496e-11	54.55	V-type ATP synthase alpha chain OS=Sulfolobus isla...	[more]
VATA_SULIN	2.496e-11	54.55	V-type ATP synthase alpha chain OS=Sulfolobus isla...	[more]
VATA_SULIM	2.496e-11	54.55	V-type ATP synthase alpha chain OS=Sulfolobus isla...	[more]
VATA_SULIL	2.496e-11	54.55	V-type ATP synthase alpha chain OS=Sulfolobus isla...	[more]
VATA_SULIK	2.496e-11	54.55	V-type ATP synthase alpha chain OS=Sulfolobus isla...	[more]
VATA_SULIA	2.496e-11	54.55	V-type ATP synthase alpha chain OS=Sulfolobus isla...	[more]
VATA_SULTO	2.496e-11	56.82	V-type ATP synthase alpha chain OS=Sulfolobus toko...	[more]
VATA_METTH	2.497e-11	41.07	V-type ATP synthase alpha chain OS=Methanobacteriu...	[more]
VATA_METS3	2.497e-11	39.29	V-type ATP synthase alpha chain OS=Methanobrevibac...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAI2DA10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY258641 ID=DY258641; Name=DY258641; organism=Citrus clementina; type=EST; length=1314bp
TTTTCACCTCCTTATGCAATTTCTCAGATTAGTAAACTGATGGGATTGAT
GGTAATAATAATTTTGTTTATTGTCTTTTTGCCCTGCATGGGGGAAGACA
AAAAGTTGTAAGTTTACGAATTTACATTCCAATCAGTAGAAAAGAAAAAG
GGTTATTCTTTAGACGTACAGGGTTTTTATATGTACATGGTCGTACTTAA
AGGTCTAGTTGTCATTTTTCTTATATAATGTATTATGTGTGAACACATAG
ATAATCACATTAAATTTAAAACAAAAAAAAAAATAAAAAAAACCCTACAT
ATACTTGCTGGAAAATGGTTTTATTATAAAGCATTGTTCTCTTGATTGTT
GCATCGAACCGGTAATCATCAGACAAAAATAATTCATAAATAGGGGGTAC
AATGTTAGCATGATGGAAGATTCAACTTCTCGTTGGTAAGAAGCGTTGAG
TAAAATTTCAAGACGGCTGGCAAAAATGCCTGCATATAATGAATATCATG
AATTCCTGTCATGCACGTTTGGCCTCAATATATAAACGTGCTGGGAAAGT
TAAATGTCTTGGTGCACCAAAACGTACAGGTATTGTCACAATTGTAGGTG
CAGTTTCTCCTCCTGAAAGAGAATTCTCAAAAACTGTAACTTCTTGCCAG
CCTCCCCATTGAGCAAGTCCTATCTAGGGTTAAGAAAAAAAAAATACCCA
AAAAAAGCATTTTCCCTTCTGTAAAATGGATTAATACTAAATCGAAATTA
TTCAACACCATTAAAATCTTTCCTTAAAACCAATTTAATCCGAAATTTTA
TTAAAACAAAGGAAAAAAGCTTGTAGGGGTGAAAACAAAAAAAAAATTAA
TCTAATAGTACTTTCTCACCTCGCTACAATAAGTAAGTTTTAGCTAAAAC
GATACACAAATCACCCAAAAAACTACAAAAGCTTTTTCAAGGACGGACTC
TCCTTATCCCATAAGAAATTATCTCCCAAAATAACAGCCTCCTCCCCTTT
CTTTTCACGTATTTTTTGGTAAAATACCCTAAAAATCTAACATCCTAATT
ATATAAATTCCACAAAAATAGAGATATACAAAAAAAAATAAAGCCATACA
ACTTCAAATGAAAACAAAAAAAAAACATTTTAATATCCTAACACTATTAT
GCTAAATGCATCCAATACGAAATAACTTCTTTTGATGAAAAAAAATCCTC
AAACCCCCACAAAACTATCTTCTCAAGACACCATCCCCAATCATCGAAGA
ACACATAAGAACACACATATCCTTATTTCTTTTCTTGTTTTTTTCACTAT
AATCATTAAAACAA