DY258641

Overview
NameDY258641
Unique NameDY258641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1314
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_THEPX (V-type ATP synthase alpha chain OS=Thermoanaerobacter sp. (strain X514) GN=atpA PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 3.826e-13
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:  516 RLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVT 641
            RLA  Y+RAG+V CLG+  R G +T+VGAVSPP  + S+ VT
Sbjct:  361 RLAEFYERAGRVICLGSDNREGALTVVGAVSPPGGDLSEPVT 402

HSP 2 Score: 44.669 bits (104), Expect = 3.826e-13
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L+
Sbjct:  317 FRDMGYSVALMADSTSRWAEALREMSGRLEEMPGEEGYPAYLA 359
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_THEP3 (V-type ATP synthase alpha chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=atpA PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 3.826e-13
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:  516 RLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVT 641
            RLA  Y+RAG+V CLG+  R G +T+VGAVSPP  + S+ VT
Sbjct:  361 RLAEFYERAGRVICLGSDNREGALTVVGAVSPPGGDLSEPVT 402

HSP 2 Score: 44.669 bits (104), Expect = 3.826e-13
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L+
Sbjct:  317 FRDMGYSVALMADSTSRWAEALREMSGRLEEMPGEEGYPAYLA 359
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_HYPBU (V-type ATP synthase alpha chain OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=atpA PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 4.967e-13
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            +RLA  Y RAG+VK  G P+R G VTIVGAVSPP  +F++ VT+
Sbjct:  364 SRLAEFYARAGRVKVPGRPERLGSVTIVGAVSPPGGDFTEPVTA 407

HSP 2 Score: 42.743 bits (99), Expect = 4.967e-13
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 2 
Query:  395 GYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            GY+V ++ DSTSRW EAL +I+ RL +MPA   Y  +L+
Sbjct:  325 GYDVLLVADSTSRWAEALREIAGRLEEMPAEEGYPSYLA 363
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_META3 (V-type ATP synthase alpha chain OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=atpA PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 4.970e-13
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            +RLA  Y+RAG+V C+G  ++ G V IVGAVSPP  +FS+ VTS
Sbjct:  361 SRLAQFYERAGRVACMGHDEKQGFVCIVGAVSPPGGDFSEPVTS 404

HSP 2 Score: 42.3578 bits (98), Expect = 4.970e-13
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F + GY V +  DSTSRW EA+ +IS RL +MP    Y  +LS
Sbjct:  318 FRDMGYGVLLTADSTSRWAEAMREISGRLEEMPGEEGYPAYLS 360
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_METVS (V-type ATP synthase alpha chain OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=atpA PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.089e-12
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            ++LA  Y+RAG+V CLG+  R G V IVGAVSPP  +FS+ VTS
Sbjct:  360 SKLAQFYERAGRVDCLGSEDRQGFVCIVGAVSPPGGDFSEPVTS 403

HSP 2 Score: 40.0466 bits (92), Expect = 1.089e-12
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F ++G  V +  DSTSRW EA+ +IS RL +MP    Y  +LS
Sbjct:  317 FRDQGLGVLLTADSTSRWAEAMREISGRLEEMPGEEGYPAYLS 359
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_METMP (V-type ATP synthase alpha chain OS=Methanococcus maripaludis GN=atpA PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.089e-12
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            ++LA  Y+RAG+V+CLG+  + G V IVGAVSPP  +FS+ VTS
Sbjct:  360 SKLAQFYERAGRVECLGSENKQGFVCIVGAVSPPGGDFSEPVTS 403

HSP 2 Score: 40.0466 bits (92), Expect = 1.089e-12
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F ++G  V +  DSTSRW EA+ +IS RL +MP    Y  +LS
Sbjct:  317 FRDQGLGVLLTADSTSRWAEAMREISGRLEEMPGEEGYPAYLS 359
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_METM7 (V-type ATP synthase alpha chain OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=atpA PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.089e-12
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            ++LA  Y+RAG+V+CLG+  + G V IVGAVSPP  +FS+ VTS
Sbjct:  360 SKLAQFYERAGRVECLGSENKQGFVCIVGAVSPPGGDFSEPVTS 403

HSP 2 Score: 40.0466 bits (92), Expect = 1.089e-12
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F ++G  V +  DSTSRW EA+ +IS RL +MP    Y  +LS
Sbjct:  317 FRDQGLGVLLTADSTSRWAEAMREISGRLEEMPGEEGYPAYLS 359
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_METM6 (V-type ATP synthase alpha chain OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=atpA PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.089e-12
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            ++LA  Y+RAG+V+CLG+  + G V IVGAVSPP  +FS+ VTS
Sbjct:  360 SKLAQFYERAGRVECLGSENKQGFVCIVGAVSPPGGDFSEPVTS 403

HSP 2 Score: 40.0466 bits (92), Expect = 1.089e-12
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F ++G  V +  DSTSRW EA+ +IS RL +MP    Y  +LS
Sbjct:  317 FRDQGLGVLLTADSTSRWAEAMREISGRLEEMPGEEGYPAYLS 359
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_CLOD6 (V-type ATP synthase alpha chain OS=Clostridium difficile (strain 630) GN=atpA PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 1.413e-12
Identity = 28/68 (41.18%), Postives = 38/68 (55.88%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +RLA  Y+RAGKV CLG  +R G +T +GAVSPP  + S+ V+            G +     K+HFP
Sbjct:  360 SRLAQFYERAGKVNCLGMDEREGTLTAIGAVSPPGGDTSEPVSQA-TLRIVKVFWGLDASLAYKRHFP 426

HSP 2 Score: 44.2838 bits (103), Expect = 1.413e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  317 FRDMGYSVALMADSTSRWAEALREMSGRLEEMPGEEGYPAYL 358
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA2_METHJ (V-type ATP synthase alpha chain 2 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=atpA2 PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.414e-12
Identity = 24/42 (57.14%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:  516 RLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVT 641
            RLA+ Y+RAG+V C G+ ++TG VTI+GAVSPP  +FS+ +T
Sbjct:  356 RLAAFYERAGRVICAGSEEKTGSVTIIGAVSPPGGDFSEPIT 397

HSP 2 Score: 40.0466 bits (92), Expect = 1.414e-12
Identity = 18/39 (46.15%), Postives = 27/39 (69.23%), Query Frame = 2 
Query:  395 GYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            G +V+++ DSTSRW EAL ++S RL +MP    Y  +L+
Sbjct:  316 GMDVALLADSTSRWGEALREVSGRLEEMPGEEGYPAYLA 354
The following BLAST results are available for this feature:
BLAST of DY258641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
VATA_THEPX3.826e-1357.14V-type ATP synthase alpha chain OS=Thermoanaerobac... [more]
VATA_THEP33.826e-1357.14V-type ATP synthase alpha chain OS=Thermoanaerobac... [more]
VATA_HYPBU4.967e-1359.09V-type ATP synthase alpha chain OS=Hyperthermus bu... [more]
VATA_META34.970e-1356.82V-type ATP synthase alpha chain OS=Methanococcus a... [more]
VATA_METVS1.089e-1259.09V-type ATP synthase alpha chain OS=Methanococcus v... [more]
VATA_METMP1.089e-1256.82V-type ATP synthase alpha chain OS=Methanococcus m... [more]
VATA_METM71.089e-1256.82V-type ATP synthase alpha chain OS=Methanococcus m... [more]
VATA_METM61.089e-1256.82V-type ATP synthase alpha chain OS=Methanococcus m... [more]
VATA_CLOD61.413e-1241.18V-type ATP synthase alpha chain OS=Clostridium dif... [more]
VATA2_METHJ1.414e-1257.14V-type ATP synthase alpha chain 2 OS=Methanospiril... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258641 ID=DY258641; Name=DY258641; organism=Citrus clementina; type=EST; length=1314bp
TTTTCACCTCCTTATGCAATTTCTCAGATTAGTAAACTGATGGGATTGAT
GGTAATAATAATTTTGTTTATTGTCTTTTTGCCCTGCATGGGGGAAGACA
AAAAGTTGTAAGTTTACGAATTTACATTCCAATCAGTAGAAAAGAAAAAG
GGTTATTCTTTAGACGTACAGGGTTTTTATATGTACATGGTCGTACTTAA
AGGTCTAGTTGTCATTTTTCTTATATAATGTATTATGTGTGAACACATAG
ATAATCACATTAAATTTAAAACAAAAAAAAAAATAAAAAAAACCCTACAT
ATACTTGCTGGAAAATGGTTTTATTATAAAGCATTGTTCTCTTGATTGTT
GCATCGAACCGGTAATCATCAGACAAAAATAATTCATAAATAGGGGGTAC
AATGTTAGCATGATGGAAGATTCAACTTCTCGTTGGTAAGAAGCGTTGAG
TAAAATTTCAAGACGGCTGGCAAAAATGCCTGCATATAATGAATATCATG
AATTCCTGTCATGCACGTTTGGCCTCAATATATAAACGTGCTGGGAAAGT
TAAATGTCTTGGTGCACCAAAACGTACAGGTATTGTCACAATTGTAGGTG
CAGTTTCTCCTCCTGAAAGAGAATTCTCAAAAACTGTAACTTCTTGCCAG
CCTCCCCATTGAGCAAGTCCTATCTAGGGTTAAGAAAAAAAAAATACCCA
AAAAAAGCATTTTCCCTTCTGTAAAATGGATTAATACTAAATCGAAATTA
TTCAACACCATTAAAATCTTTCCTTAAAACCAATTTAATCCGAAATTTTA
TTAAAACAAAGGAAAAAAGCTTGTAGGGGTGAAAACAAAAAAAAAATTAA
TCTAATAGTACTTTCTCACCTCGCTACAATAAGTAAGTTTTAGCTAAAAC
GATACACAAATCACCCAAAAAACTACAAAAGCTTTTTCAAGGACGGACTC
TCCTTATCCCATAAGAAATTATCTCCCAAAATAACAGCCTCCTCCCCTTT
CTTTTCACGTATTTTTTGGTAAAATACCCTAAAAATCTAACATCCTAATT
ATATAAATTCCACAAAAATAGAGATATACAAAAAAAAATAAAGCCATACA
ACTTCAAATGAAAACAAAAAAAAAACATTTTAATATCCTAACACTATTAT
GCTAAATGCATCCAATACGAAATAACTTCTTTTGATGAAAAAAAATCCTC
AAACCCCCACAAAACTATCTTCTCAAGACACCATCCCCAATCATCGAAGA
ACACATAAGAACACACATATCCTTATTTCTTTTCTTGTTTTTTTCACTAT
AATCATTAAAACAA
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