DY258641 | Citrus Genome Database

Overview


Name	DY258641
Unique Name	DY258641
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1314

Libraries


Library Name	Type
AbsDev1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_CLOBB (V-type ATP synthase alpha chain OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=atpA PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.835e-12
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVT 641
            +RLA  Y+RAGKV+CLG   R G +T +GAVSPP  + S+ V+
Sbjct:  360 SRLADYYERAGKVECLGNDGRIGSITAIGAVSPPGGDISEPVS 402

HSP 2 Score: 44.669 bits (104), Expect = 1.835e-12
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+VS+M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  317 FRDMGYSVSIMADSTSRWAEALREMSGRLEEMPGDEGYPAYL 358

[Close]

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_CLOTH (V-type ATP synthase alpha chain OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=atpA PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 1.835e-12
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVT 641
            +RLA  Y+RAG+V CLG+  R G +T +GAVSPP  + S+ VT
Sbjct:  360 SRLAQFYERAGRVVCLGSDGREGALTAIGAVSPPGGDLSEPVT 402

HSP 2 Score: 44.2838 bits (103), Expect = 1.835e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  317 FRDMGYSVALMADSTSRWAEALREMSGRLEEMPGEEGYPAYL 358

[Close]

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_METM5 (V-type ATP synthase alpha chain OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=atpA PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.835e-12
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            ++LA  Y+RAG+V+CLG+  + G V IVGAVSPP  +FS+ VTS
Sbjct:  360 SKLAQFYERAGRVQCLGSEDKHGFVCIVGAVSPPGGDFSEPVTS 403

HSP 2 Score: 40.0466 bits (92), Expect = 1.835e-12
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F ++G  V +  DSTSRW EA+ +IS RL +MP    Y  +LS
Sbjct:  317 FRDQGLGVLLTADSTSRWAEAMREISGRLEEMPGEEGYPAYLS 359

[Close]

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRSV (V-type ATP synthase alpha chain OS=Streptococcus sanguinis (strain SK36) GN=atpA PE=3 SV=2)

HSP 1 Score: 50.447 bits (119), Expect = 2.382e-12
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+VK LG+  R G +T +GAVSPP  + S+ VT            G + +  Q++HFP
Sbjct:  361 SRIAEYYERAGRVKTLGSTAREGSITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAQLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 2.382e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYL 359

[Close]

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRGC (V-type ATP synthase alpha chain OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=atpA PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 2.382e-12
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+VK LG+  R G +T +GAVSPP  + S+ VT            G + +  Q++HFP
Sbjct:  361 SRIAEYYERAGRVKTLGSTAREGSITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAQLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 2.382e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYL 359

[Close]

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_PYRFU (V-type ATP synthase alpha chain OS=Pyrococcus furiosus GN=atpA PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 3.050e-12
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTV 638
            +RLA  Y+RAG+V  LG+  R G V+++GAVSPP  +FS+ V
Sbjct:  787 SRLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPV 828

HSP 2 Score: 45.8246 bits (107), Expect = 3.050e-12
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F + GY+V++M DSTSRW EAL +IS RL +MP    Y  +L+
Sbjct:  744 FRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLA 786

[Close]

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_THEPD (V-type ATP synthase alpha chain OS=Thermofilum pendens (strain Hrk 5) GN=atpA PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 3.092e-12
Identity = 21/42 (50.00%), Postives = 34/42 (80.95%), Query Frame = 3

Query:  516 RLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVT 641
            ++A  Y+R G+VK LG+P+R+G VT++GAVSPP  ++++ VT
Sbjct:  364 KIAEFYERGGRVKALGSPERSGSVTVLGAVSPPGGDYNEPVT 405

HSP 2 Score: 41.5874 bits (96), Expect = 3.092e-12
Identity = 18/40 (45.00%), Postives = 29/40 (72.50%), Query Frame = 2

Query:  389 NRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            ++GY+V+++ DSTSRW EAL +I+ RL ++P    Y  +L
Sbjct:  322 DQGYDVTLIADSTSRWAEALREIAGRLGELPVERGYPAYL 361

[Close]

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRPM (V-type ATP synthase alpha chain OS=Streptococcus pyogenes serotype M28 GN=atpA PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 4.017e-12
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+V+ LG+ +R G +T +GAVSPP  + S+ VT            G +    Q++HFP
Sbjct:  361 SRIAEYYERAGRVRTLGSQEREGTITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAPLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 4.017e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLQEMPGDEGYPAYL 359

[Close]

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRPI (V-type ATP synthase alpha chain OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=atpA PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 4.017e-12
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+ + LG P+R G +T +GAVSPP  + S+ VT            G +    Q++HFP
Sbjct:  361 SRIAEYYERAGRSQALGLPEREGTITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAPLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 4.017e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYL 359

[Close]

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRPG (V-type ATP synthase alpha chain OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=atpA PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 4.017e-12
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+V+ LG+ +R G +T +GAVSPP  + S+ VT            G +    Q++HFP
Sbjct:  361 SRIAEYYERAGRVRTLGSQEREGTITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAPLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 4.017e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLQEMPGDEGYPAYL 359

The following BLAST results are available for this feature:

BLAST of DY258641 vs. ExPASy Swiss-Prot

BLAST of DY258641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121


Match Name	E-value	Identity	Description
VATA_CLOBB	1.835e-12	53.49	V-type ATP synthase alpha chain OS=Clostridium bot...	[more]
VATA_CLOTH	1.835e-12	53.49	V-type ATP synthase alpha chain OS=Clostridium the...	[more]
VATA_METM5	1.835e-12	56.82	V-type ATP synthase alpha chain OS=Methanococcus m...	[more]
VATA_STRSV	2.382e-12	39.71	V-type ATP synthase alpha chain OS=Streptococcus s...	[more]
VATA_STRGC	2.382e-12	39.71	V-type ATP synthase alpha chain OS=Streptococcus g...	[more]
VATA_PYRFU	3.050e-12	52.38	V-type ATP synthase alpha chain OS=Pyrococcus furi...	[more]
VATA_THEPD	3.092e-12	50.00	V-type ATP synthase alpha chain OS=Thermofilum pen...	[more]
VATA_STRPM	4.017e-12	38.24	V-type ATP synthase alpha chain OS=Streptococcus p...	[more]
VATA_STRPI	4.017e-12	38.24	V-type ATP synthase alpha chain OS=Streptococcus p...	[more]
VATA_STRPG	4.017e-12	38.24	V-type ATP synthase alpha chain OS=Streptococcus p...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAI2DA10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY258641 ID=DY258641; Name=DY258641; organism=Citrus clementina; type=EST; length=1314bp
TTTTCACCTCCTTATGCAATTTCTCAGATTAGTAAACTGATGGGATTGAT
GGTAATAATAATTTTGTTTATTGTCTTTTTGCCCTGCATGGGGGAAGACA
AAAAGTTGTAAGTTTACGAATTTACATTCCAATCAGTAGAAAAGAAAAAG
GGTTATTCTTTAGACGTACAGGGTTTTTATATGTACATGGTCGTACTTAA
AGGTCTAGTTGTCATTTTTCTTATATAATGTATTATGTGTGAACACATAG
ATAATCACATTAAATTTAAAACAAAAAAAAAAATAAAAAAAACCCTACAT
ATACTTGCTGGAAAATGGTTTTATTATAAAGCATTGTTCTCTTGATTGTT
GCATCGAACCGGTAATCATCAGACAAAAATAATTCATAAATAGGGGGTAC
AATGTTAGCATGATGGAAGATTCAACTTCTCGTTGGTAAGAAGCGTTGAG
TAAAATTTCAAGACGGCTGGCAAAAATGCCTGCATATAATGAATATCATG
AATTCCTGTCATGCACGTTTGGCCTCAATATATAAACGTGCTGGGAAAGT
TAAATGTCTTGGTGCACCAAAACGTACAGGTATTGTCACAATTGTAGGTG
CAGTTTCTCCTCCTGAAAGAGAATTCTCAAAAACTGTAACTTCTTGCCAG
CCTCCCCATTGAGCAAGTCCTATCTAGGGTTAAGAAAAAAAAAATACCCA
AAAAAAGCATTTTCCCTTCTGTAAAATGGATTAATACTAAATCGAAATTA
TTCAACACCATTAAAATCTTTCCTTAAAACCAATTTAATCCGAAATTTTA
TTAAAACAAAGGAAAAAAGCTTGTAGGGGTGAAAACAAAAAAAAAATTAA
TCTAATAGTACTTTCTCACCTCGCTACAATAAGTAAGTTTTAGCTAAAAC
GATACACAAATCACCCAAAAAACTACAAAAGCTTTTTCAAGGACGGACTC
TCCTTATCCCATAAGAAATTATCTCCCAAAATAACAGCCTCCTCCCCTTT
CTTTTCACGTATTTTTTGGTAAAATACCCTAAAAATCTAACATCCTAATT
ATATAAATTCCACAAAAATAGAGATATACAAAAAAAAATAAAGCCATACA
ACTTCAAATGAAAACAAAAAAAAAACATTTTAATATCCTAACACTATTAT
GCTAAATGCATCCAATACGAAATAACTTCTTTTGATGAAAAAAAATCCTC
AAACCCCCACAAAACTATCTTCTCAAGACACCATCCCCAATCATCGAAGA
ACACATAAGAACACACATATCCTTATTTCTTTTCTTGTTTTTTTCACTAT
AATCATTAAAACAA