DY258641 | Citrus Genome Database

Overview


Name	DY258641
Unique Name	DY258641
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1314

Libraries


Library Name	Type
AbsDev1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRPF (V-type ATP synthase alpha chain OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=atpA PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 4.017e-12
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+V+ LG+ +R G +T +GAVSPP  + S+ VT            G +    Q++HFP
Sbjct:  361 SRIAEYYERAGRVRTLGSQEREGTITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAPLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 4.017e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLQEMPGDEGYPAYL 359

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRPD (V-type ATP synthase alpha chain OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=atpA PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 4.017e-12
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+V+ LG+ +R G +T +GAVSPP  + S+ VT            G +    Q++HFP
Sbjct:  361 SRIAEYYERAGRVRTLGSQEREGTITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAPLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 4.017e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLQEMPGDEGYPAYL 359

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRPC (V-type ATP synthase alpha chain OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=atpA PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 4.017e-12
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+V+ LG+ +R G +T +GAVSPP  + S+ VT            G +    Q++HFP
Sbjct:  361 SRIAEYYERAGRVRTLGSQEREGTITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAPLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 4.017e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLQEMPGDEGYPAYL 359

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRPB (V-type ATP synthase alpha chain OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=atpA PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 4.017e-12
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+V+ LG+ +R G +T +GAVSPP  + S+ VT            G +    Q++HFP
Sbjct:  361 SRIAEYYERAGRVRTLGSQEREGTITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAPLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 4.017e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLQEMPGDEGYPAYL 359

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRP6 (V-type ATP synthase alpha chain OS=Streptococcus pyogenes serotype M6 GN=atpA PE=3 SV=2)

HSP 1 Score: 49.6766 bits (117), Expect = 4.017e-12
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+V+ LG+ +R G +T +GAVSPP  + S+ VT            G +    Q++HFP
Sbjct:  361 SRIAEYYERAGRVRTLGSQEREGTITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAPLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 4.017e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLQEMPGDEGYPAYL 359

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRP1 (V-type ATP synthase alpha chain OS=Streptococcus pyogenes serotype M1 GN=atpA PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 4.017e-12
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+V+ LG+ +R G +T +GAVSPP  + S+ VT            G +    Q++HFP
Sbjct:  361 SRIAEYYERAGRVRTLGSQEREGTITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAPLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 4.017e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLQEMPGDEGYPAYL 359

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_CLOBA (V-type ATP synthase alpha chain OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=atpA PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 4.017e-12
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVT 641
            +RLA  Y+RAGKV+CLG   R G +T +GAVSPP  + S+ V+
Sbjct:  360 SRLADYYERAGKVECLGNDGRIGSITAIGAVSPPGGDISEPVS 402

HSP 2 Score: 43.5134 bits (101), Expect = 4.017e-12
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY VS+M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  317 FRDMGYAVSIMADSTSRWAEALREMSGRLEEMPGDEGYPAYL 358

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_CLOPS (V-type ATP synthase alpha chain OS=Clostridium perfringens (strain SM101 / Type A) GN=atpA PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 4.017e-12
Identity = 29/68 (42.65%), Postives = 37/68 (54.41%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +RLA  Y+RAGKV  LG   R G VT +GAVSPP  + S+ VT            G + +   K+HFP
Sbjct:  360 SRLADYYERAGKVVALGKDGREGAVTAIGAVSPPGGDISEPVTQ-STLRIVKVFWGLDAQLAYKRHFP 426

HSP 2 Score: 44.669 bits (104), Expect = 4.017e-12
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+VS+M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  317 FRDMGYSVSIMADSTSRWAEALREMSGRLEEMPGDEGYPAYL 358

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_CLOPE (V-type ATP synthase alpha chain OS=Clostridium perfringens GN=atpA PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 4.017e-12
Identity = 29/68 (42.65%), Postives = 37/68 (54.41%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +RLA  Y+RAGKV  LG   R G VT +GAVSPP  + S+ VT            G + +   K+HFP
Sbjct:  360 SRLADYYERAGKVVALGKDGREGAVTAIGAVSPPGGDISEPVTQ-STLRIVKVFWGLDAQLAYKRHFP 426

HSP 2 Score: 44.669 bits (104), Expect = 4.017e-12
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+VS+M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  317 FRDMGYSVSIMADSTSRWAEALREMSGRLEEMPGDEGYPAYL 358

BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_CLOP1 (V-type ATP synthase alpha chain OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=atpA PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 4.017e-12
Identity = 29/68 (42.65%), Postives = 37/68 (54.41%), Query Frame = 3

Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +RLA  Y+RAGKV  LG   R G VT +GAVSPP  + S+ VT            G + +   K+HFP
Sbjct:  360 SRLADYYERAGKVVALGKDGREGAVTAIGAVSPPGGDISEPVTQ-STLRIVKVFWGLDAQLAYKRHFP 426

HSP 2 Score: 44.669 bits (104), Expect = 4.017e-12
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+VS+M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  317 FRDMGYSVSIMADSTSRWAEALREMSGRLEEMPGDEGYPAYL 358

The following BLAST results are available for this feature:

BLAST of DY258641 vs. ExPASy Swiss-Prot

BLAST of DY258641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121


Match Name	E-value	Identity	Description
VATA_STRPF	4.017e-12	38.24	V-type ATP synthase alpha chain OS=Streptococcus p...	[more]
VATA_STRPD	4.017e-12	38.24	V-type ATP synthase alpha chain OS=Streptococcus p...	[more]
VATA_STRPC	4.017e-12	38.24	V-type ATP synthase alpha chain OS=Streptococcus p...	[more]
VATA_STRPB	4.017e-12	38.24	V-type ATP synthase alpha chain OS=Streptococcus p...	[more]
VATA_STRP6	4.017e-12	38.24	V-type ATP synthase alpha chain OS=Streptococcus p...	[more]
VATA_STRP1	4.017e-12	38.24	V-type ATP synthase alpha chain OS=Streptococcus p...	[more]
VATA_CLOBA	4.017e-12	53.49	V-type ATP synthase alpha chain OS=Clostridium bot...	[more]
VATA_CLOPS	4.017e-12	42.65	V-type ATP synthase alpha chain OS=Clostridium per...	[more]
VATA_CLOPE	4.017e-12	42.65	V-type ATP synthase alpha chain OS=Clostridium per...	[more]
VATA_CLOP1	4.017e-12	42.65	V-type ATP synthase alpha chain OS=Clostridium per...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAI2DA10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY258641 ID=DY258641; Name=DY258641; organism=Citrus clementina; type=EST; length=1314bp
TTTTCACCTCCTTATGCAATTTCTCAGATTAGTAAACTGATGGGATTGAT
GGTAATAATAATTTTGTTTATTGTCTTTTTGCCCTGCATGGGGGAAGACA
AAAAGTTGTAAGTTTACGAATTTACATTCCAATCAGTAGAAAAGAAAAAG
GGTTATTCTTTAGACGTACAGGGTTTTTATATGTACATGGTCGTACTTAA
AGGTCTAGTTGTCATTTTTCTTATATAATGTATTATGTGTGAACACATAG
ATAATCACATTAAATTTAAAACAAAAAAAAAAATAAAAAAAACCCTACAT
ATACTTGCTGGAAAATGGTTTTATTATAAAGCATTGTTCTCTTGATTGTT
GCATCGAACCGGTAATCATCAGACAAAAATAATTCATAAATAGGGGGTAC
AATGTTAGCATGATGGAAGATTCAACTTCTCGTTGGTAAGAAGCGTTGAG
TAAAATTTCAAGACGGCTGGCAAAAATGCCTGCATATAATGAATATCATG
AATTCCTGTCATGCACGTTTGGCCTCAATATATAAACGTGCTGGGAAAGT
TAAATGTCTTGGTGCACCAAAACGTACAGGTATTGTCACAATTGTAGGTG
CAGTTTCTCCTCCTGAAAGAGAATTCTCAAAAACTGTAACTTCTTGCCAG
CCTCCCCATTGAGCAAGTCCTATCTAGGGTTAAGAAAAAAAAAATACCCA
AAAAAAGCATTTTCCCTTCTGTAAAATGGATTAATACTAAATCGAAATTA
TTCAACACCATTAAAATCTTTCCTTAAAACCAATTTAATCCGAAATTTTA
TTAAAACAAAGGAAAAAAGCTTGTAGGGGTGAAAACAAAAAAAAAATTAA
TCTAATAGTACTTTCTCACCTCGCTACAATAAGTAAGTTTTAGCTAAAAC
GATACACAAATCACCCAAAAAACTACAAAAGCTTTTTCAAGGACGGACTC
TCCTTATCCCATAAGAAATTATCTCCCAAAATAACAGCCTCCTCCCCTTT
CTTTTCACGTATTTTTTGGTAAAATACCCTAAAAATCTAACATCCTAATT
ATATAAATTCCACAAAAATAGAGATATACAAAAAAAAATAAAGCCATACA
ACTTCAAATGAAAACAAAAAAAAAACATTTTAATATCCTAACACTATTAT
GCTAAATGCATCCAATACGAAATAACTTCTTTTGATGAAAAAAAATCCTC
AAACCCCCACAAAACTATCTTCTCAAGACACCATCCCCAATCATCGAAGA
ACACATAAGAACACACATATCCTTATTTCTTTTCTTGTTTTTTTCACTAT
AATCATTAAAACAA