DY258641

Overview
NameDY258641
Unique NameDY258641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1314
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_THESI (V-type ATP synthase alpha chain OS=Thermococcus sp. (strain KI) GN=atpA PE=3 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 4.018e-12
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F ++GY+V++M DSTSRW EAL +IS RL +MP    Y  +L+
Sbjct:  316 FRDQGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLA 358

HSP 2 Score: 46.595 bits (109), Expect = 4.018e-12
Identity = 20/42 (47.62%), Postives = 32/42 (76.19%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTV 638
            +++A  Y+RAG+V  LG+ +R G V+++GAVSPP  +FS+ V
Sbjct:  359 SKIAEFYERAGRVITLGSDERVGSVSVIGAVSPPGGDFSEPV 400
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_PYRKO (V-type ATP synthase alpha chain OS=Pyrococcus kodakaraensis GN=atpA PE=3 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 4.018e-12
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F ++GY+V++M DSTSRW EAL +IS RL +MP    Y  +L+
Sbjct:  316 FRDQGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLA 358

HSP 2 Score: 46.595 bits (109), Expect = 4.018e-12
Identity = 20/42 (47.62%), Postives = 32/42 (76.19%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTV 638
            +++A  Y+RAG+V  LG+ +R G V+++GAVSPP  +FS+ V
Sbjct:  359 SKIAEFYERAGRVITLGSDERVGSVSVIGAVSPPGGDFSEPV 400
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_THET8 (V-type ATP synthase alpha chain OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=atpA PE=1 SV=2)

HSP 1 Score: 46.9802 bits (110), Expect = 4.020e-12
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F ++G++V++M DSTSRW EAL +IS RL +MPA   Y  +L+
Sbjct:  313 FRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLA 355

HSP 2 Score: 46.2098 bits (108), Expect = 4.020e-12
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVT 641
            ARLA+ Y+RAGKV  LG  +  G VTIVGAVSPP  + S+ VT
Sbjct:  356 ARLAAFYERAGKVITLGGEE--GAVTIVGAVSPPGGDMSEPVT 396
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_THET2 (V-type ATP synthase alpha chain OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=atpA PE=3 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 4.020e-12
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F ++G++V++M DSTSRW EAL +IS RL +MPA   Y  +L+
Sbjct:  313 FRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLA 355

HSP 2 Score: 46.2098 bits (108), Expect = 4.020e-12
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVT 641
            ARLA+ Y+RAGKV  LG  +  G VTIVGAVSPP  + S+ VT
Sbjct:  356 ARLAAFYERAGKVITLGGEE--GAVTIVGAVSPPGGDMSEPVT 396
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_CENSY (V-type ATP synthase alpha chain OS=Cenarchaeum symbiosum GN=atpA PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 5.215e-12
Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            +RLA  Y+RAG+V+ LG+P+R G VT+VGAVSP   +F++ VT+
Sbjct:  362 SRLAEFYERAGRVRALGSPERNGSVTLVGAVSPSGGDFTEPVTT 405

HSP 2 Score: 39.2762 bits (90), Expect = 5.215e-12
Identity = 19/39 (48.72%), Postives = 27/39 (69.23%), Query Frame = 2 
Query:  395 GYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            G +V ++ DSTSRW EAL ++S RL +MPA   Y  +L+
Sbjct:  323 GKDVVLVADSTSRWAEALREMSGRLEEMPAEEGYPSYLA 361
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRZJ (V-type ATP synthase alpha chain OS=Streptococcus pneumoniae (strain JJA) GN=atpA PE=3 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 5.215e-12
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+ + LG P+R G +T +GAVSPP  + S+ VT            G +    Q++HFP
Sbjct:  361 SRIAEYYERAGRSQVLGLPEREGTITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAPLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 5.215e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYL 359
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRPN (V-type ATP synthase alpha chain OS=Streptococcus pneumoniae GN=atpA PE=3 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 5.215e-12
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+ + LG P+R G +T +GAVSPP  + S+ VT            G +    Q++HFP
Sbjct:  361 SRIAEYYERAGRSQVLGLPEREGTITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAPLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 5.215e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYL 359
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRPJ (V-type ATP synthase alpha chain OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=atpA PE=3 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 5.215e-12
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+ + LG P+R G +T +GAVSPP  + S+ VT            G +    Q++HFP
Sbjct:  361 SRIAEYYERAGRSQVLGLPEREGTITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAPLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 5.215e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYL 359
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRP4 (V-type ATP synthase alpha chain OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=atpA PE=3 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 5.215e-12
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+ + LG P+R G +T +GAVSPP  + S+ VT            G +    Q++HFP
Sbjct:  361 SRIAEYYERAGRSQVLGLPEREGTITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAPLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 5.215e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYL 359
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRP3 (V-type ATP synthase alpha chain OS=Streptococcus pyogenes serotype M3 GN=atpA PE=3 SV=2)

HSP 1 Score: 49.2914 bits (116), Expect = 5.215e-12
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+RAG+V+ LG+ +R G +T +GAVSPP  + S+ VT            G +    Q++HFP
Sbjct:  361 SRIAEYYERAGRVRTLGSQEREGTITAIGAVSPPGGDISEPVTQ-NTLRIIKVFWGLDAPLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 5.215e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLQEMPGDEGYPAYL 359
The following BLAST results are available for this feature:
BLAST of DY258641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
VATA_THESI4.018e-1251.16V-type ATP synthase alpha chain OS=Thermococcus sp... [more]
VATA_PYRKO4.018e-1251.16V-type ATP synthase alpha chain OS=Pyrococcus koda... [more]
VATA_THET84.020e-1251.16V-type ATP synthase alpha chain OS=Thermus thermop... [more]
VATA_THET24.020e-1251.16V-type ATP synthase alpha chain OS=Thermus thermop... [more]
VATA_CENSY5.215e-1254.55V-type ATP synthase alpha chain OS=Cenarchaeum sym... [more]
VATA_STRZJ5.215e-1238.24V-type ATP synthase alpha chain OS=Streptococcus p... [more]
VATA_STRPN5.215e-1238.24V-type ATP synthase alpha chain OS=Streptococcus p... [more]
VATA_STRPJ5.215e-1238.24V-type ATP synthase alpha chain OS=Streptococcus p... [more]
VATA_STRP45.215e-1238.24V-type ATP synthase alpha chain OS=Streptococcus p... [more]
VATA_STRP35.215e-1238.24V-type ATP synthase alpha chain OS=Streptococcus p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2DA10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258641 ID=DY258641; Name=DY258641; organism=Citrus clementina; type=EST; length=1314bp
TTTTCACCTCCTTATGCAATTTCTCAGATTAGTAAACTGATGGGATTGAT
GGTAATAATAATTTTGTTTATTGTCTTTTTGCCCTGCATGGGGGAAGACA
AAAAGTTGTAAGTTTACGAATTTACATTCCAATCAGTAGAAAAGAAAAAG
GGTTATTCTTTAGACGTACAGGGTTTTTATATGTACATGGTCGTACTTAA
AGGTCTAGTTGTCATTTTTCTTATATAATGTATTATGTGTGAACACATAG
ATAATCACATTAAATTTAAAACAAAAAAAAAAATAAAAAAAACCCTACAT
ATACTTGCTGGAAAATGGTTTTATTATAAAGCATTGTTCTCTTGATTGTT
GCATCGAACCGGTAATCATCAGACAAAAATAATTCATAAATAGGGGGTAC
AATGTTAGCATGATGGAAGATTCAACTTCTCGTTGGTAAGAAGCGTTGAG
TAAAATTTCAAGACGGCTGGCAAAAATGCCTGCATATAATGAATATCATG
AATTCCTGTCATGCACGTTTGGCCTCAATATATAAACGTGCTGGGAAAGT
TAAATGTCTTGGTGCACCAAAACGTACAGGTATTGTCACAATTGTAGGTG
CAGTTTCTCCTCCTGAAAGAGAATTCTCAAAAACTGTAACTTCTTGCCAG
CCTCCCCATTGAGCAAGTCCTATCTAGGGTTAAGAAAAAAAAAATACCCA
AAAAAAGCATTTTCCCTTCTGTAAAATGGATTAATACTAAATCGAAATTA
TTCAACACCATTAAAATCTTTCCTTAAAACCAATTTAATCCGAAATTTTA
TTAAAACAAAGGAAAAAAGCTTGTAGGGGTGAAAACAAAAAAAAAATTAA
TCTAATAGTACTTTCTCACCTCGCTACAATAAGTAAGTTTTAGCTAAAAC
GATACACAAATCACCCAAAAAACTACAAAAGCTTTTTCAAGGACGGACTC
TCCTTATCCCATAAGAAATTATCTCCCAAAATAACAGCCTCCTCCCCTTT
CTTTTCACGTATTTTTTGGTAAAATACCCTAAAAATCTAACATCCTAATT
ATATAAATTCCACAAAAATAGAGATATACAAAAAAAAATAAAGCCATACA
ACTTCAAATGAAAACAAAAAAAAAACATTTTAATATCCTAACACTATTAT
GCTAAATGCATCCAATACGAAATAACTTCTTTTGATGAAAAAAAATCCTC
AAACCCCCACAAAACTATCTTCTCAAGACACCATCCCCAATCATCGAAGA
ACACATAAGAACACACATATCCTTATTTCTTTTCTTGTTTTTTTCACTAT
AATCATTAAAACAA
back to top