DY258641

Overview
NameDY258641
Unique NameDY258641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1314
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA3_METHJ (V-type ATP synthase alpha chain 3 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=atpA3 PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 5.216e-12
Identity = 21/43 (48.84%), Postives = 31/43 (72.09%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVT 641
            +RLA  Y+RAG+V  LG+    G ++++GAVSPP  +FS+ VT
Sbjct:  362 SRLADFYERAGRVSLLGSGDHEGSISVIGAVSPPGGDFSEPVT 404

HSP 2 Score: 45.0542 bits (105), Expect = 5.216e-12
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 2 
Query:  395 GYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            GY+V++M DSTSRW EA+ +IS RL +MP    Y  +LS
Sbjct:  323 GYHVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLS 361
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_THEGJ (V-type ATP synthase alpha chain OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=atpA PE=3 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 5.217e-12
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F ++GY+V++M DSTSRW EAL +IS RL +MP    Y  +L+
Sbjct:  316 FRDQGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLA 358

HSP 2 Score: 46.2098 bits (108), Expect = 5.217e-12
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTV 638
            +++A  Y+RAG+V  LG+  R G V+++GAVSPP  +FS+ V
Sbjct:  359 SKIAEFYERAGRVVTLGSEPRVGSVSVIGAVSPPGGDFSEPV 400
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_DESSY (V-type ATP synthase alpha chain OS=Desulfurococcus sp. (strain SY) GN=atpA PE=3 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 5.217e-12
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F ++GY+V++M DSTSRW EAL +IS RL +MP    Y  +L+
Sbjct:  316 FRDQGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLA 358

HSP 2 Score: 46.2098 bits (108), Expect = 5.217e-12
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTV 638
            +++A  Y+RAG+V  LG+  R G V+++GAVSPP  +FS+ V
Sbjct:  359 SKIAEFYERAGRVVTLGSEPRVGSVSVIGAVSPPGGDFSEPV 400
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_PYRAB (V-type ATP synthase alpha chain OS=Pyrococcus abyssi GN=atpA PE=3 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 6.674e-12
Identity = 21/42 (50.00%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTV 638
            ++LA  Y+RAG+V  LG+  R G V+++GAVSPP  +FS+ V
Sbjct:  791 SKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPV 832

HSP 2 Score: 45.8246 bits (107), Expect = 6.674e-12
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F + GY+V++M DSTSRW EAL +IS RL +MP    Y  +L+
Sbjct:  748 FRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLA 790
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_PYRHO (V-type ATP synthase alpha chain OS=Pyrococcus horikoshii GN=atpA PE=1 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 6.683e-12
Identity = 21/42 (50.00%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTV 638
            ++LA  Y+RAG+V  LG+  R G V+++GAVSPP  +FS+ V
Sbjct:  738 SKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPV 779

HSP 2 Score: 45.8246 bits (107), Expect = 6.683e-12
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F + GY+V++M DSTSRW EAL +IS RL +MP    Y  +L+
Sbjct:  695 FRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLA 737
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_METJA (V-type ATP synthase alpha chain OS=Methanocaldococcus jannaschii GN=atpA PE=3 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 6.773e-12
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTS 644
            +RLA  Y+RAG+V  LG   R G V IVGAVSPP  +FS+ VTS
Sbjct:  362 SRLAQFYERAGRVITLGKDNRQGFVCIVGAVSPPGGDFSEPVTS 405

HSP 2 Score: 41.2022 bits (95), Expect = 6.773e-12
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F + GY V +  DSTSRW EA+ +IS RL +MP    Y  +L+
Sbjct:  319 FRDMGYGVLLTADSTSRWAEAMREISGRLEEMPGEEGYPAYLA 361
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_STRP8 (V-type ATP synthase alpha chain OS=Streptococcus pyogenes serotype M18 GN=atpA PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 8.791e-12
Identity = 25/68 (36.76%), Postives = 40/68 (58.82%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVTSCQPPH*ASPI*G*EKKNTQKKHFP 716
            +R+A  Y+R+G+V+ LG+ +R G +T +GAVSPP  + S+ VT            G +    Q++HFP
Sbjct:  361 SRIAEYYERSGRVRTLGSQEREGTITAIGAVSPPGGDISEPVTQ-NTLRIVKVFWGLDAPLAQRRHFP 427

HSP 2 Score: 43.5134 bits (101), Expect = 8.791e-12
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY+V++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSVAIMADSTSRWAEALREMSGRLQEMPGDEGYPAYL 359
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA1_CLOTE (V-type ATP synthase alpha chain 1 OS=Clostridium tetani GN=atpA1 PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 8.791e-12
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVT 641
            +RLA  Y+RAG V CLG   R G +T +GAVSPP  + S+ VT
Sbjct:  361 SRLAEFYERAGNVICLGQDGREGALTAIGAVSPPGGDLSEPVT 403

HSP 2 Score: 43.8986 bits (102), Expect = 8.791e-12
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFL 508
            F + GY++++M DSTSRW EAL ++S RL +MP    Y  +L
Sbjct:  318 FRDMGYSIALMADSTSRWAEALREMSGRLEEMPGEEGYPAYL 359
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_THEON (V-type ATP synthase alpha chain OS=Thermococcus onnurineus (strain NA1) GN=atpA PE=3 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 8.793e-12
Identity = 20/42 (47.62%), Postives = 32/42 (76.19%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTV 638
            +++A  Y+RAG+V  LG+ +R G V+++GAVSPP  +FS+ V
Sbjct:  359 SKIAEFYERAGRVITLGSDERIGSVSVIGAVSPPGGDFSEPV 400

HSP 2 Score: 45.8246 bits (107), Expect = 8.793e-12
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 2 
Query:  383 FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            F + GY+V++M DSTSRW EAL +IS RL +MP    Y  +L+
Sbjct:  316 FRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLA 358
[Close]
BLAST of DY258641 vs. ExPASy Swiss-Prot
Match: VATA_METST (V-type ATP synthase alpha chain OS=Methanosphaera stadtmanae (strain DSM 3091) GN=atpA PE=3 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 8.793e-12
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 3 
Query:  513 ARLASIYKRAGKVKCLGAPKRTGIVTIVGAVSPPEREFSKTVT 641
            +RLA  Y+RAG+V  +G+ K    VT+VGAVSPP  + S+ VT
Sbjct:  360 SRLAQFYERAGRVTTIGSHKAEASVTVVGAVSPPGGDLSEPVT 402

HSP 2 Score: 45.8246 bits (107), Expect = 8.793e-12
Identity = 22/56 (39.29%), Postives = 35/56 (62.50%), Query Frame = 2 
Query:  344 DCCIEPVIIRQK*FINRGYNVSMMEDSTSRW*EALSKISRRLAKMPAYNEYHEFLS 511
            + C+   I   + F + GY+V++M DSTSRW EA+ ++S RL +MP    Y  +L+
Sbjct:  304 EACVYTGITIAEYFRDMGYDVALMADSTSRWAEAMRELSGRLEEMPGEEGYPAYLA 359
The following BLAST results are available for this feature:
BLAST of DY258641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
VATA3_METHJ5.216e-1248.84V-type ATP synthase alpha chain 3 OS=Methanospiril... [more]
VATA_THEGJ5.217e-1251.16V-type ATP synthase alpha chain OS=Thermococcus ga... [more]
VATA_DESSY5.217e-1251.16V-type ATP synthase alpha chain OS=Desulfurococcus... [more]
VATA_PYRAB6.674e-1250.00V-type ATP synthase alpha chain OS=Pyrococcus abys... [more]
VATA_PYRHO6.683e-1250.00V-type ATP synthase alpha chain OS=Pyrococcus hori... [more]
VATA_METJA6.773e-1259.09V-type ATP synthase alpha chain OS=Methanocaldococ... [more]
VATA_STRP88.791e-1236.76V-type ATP synthase alpha chain OS=Streptococcus p... [more]
VATA1_CLOTE8.791e-1253.49V-type ATP synthase alpha chain 1 OS=Clostridium t... [more]
VATA_THEON8.793e-1247.62V-type ATP synthase alpha chain OS=Thermococcus on... [more]
VATA_METST8.793e-1251.16V-type ATP synthase alpha chain OS=Methanosphaera ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258641 ID=DY258641; Name=DY258641; organism=Citrus clementina; type=EST; length=1314bp
TTTTCACCTCCTTATGCAATTTCTCAGATTAGTAAACTGATGGGATTGAT
GGTAATAATAATTTTGTTTATTGTCTTTTTGCCCTGCATGGGGGAAGACA
AAAAGTTGTAAGTTTACGAATTTACATTCCAATCAGTAGAAAAGAAAAAG
GGTTATTCTTTAGACGTACAGGGTTTTTATATGTACATGGTCGTACTTAA
AGGTCTAGTTGTCATTTTTCTTATATAATGTATTATGTGTGAACACATAG
ATAATCACATTAAATTTAAAACAAAAAAAAAAATAAAAAAAACCCTACAT
ATACTTGCTGGAAAATGGTTTTATTATAAAGCATTGTTCTCTTGATTGTT
GCATCGAACCGGTAATCATCAGACAAAAATAATTCATAAATAGGGGGTAC
AATGTTAGCATGATGGAAGATTCAACTTCTCGTTGGTAAGAAGCGTTGAG
TAAAATTTCAAGACGGCTGGCAAAAATGCCTGCATATAATGAATATCATG
AATTCCTGTCATGCACGTTTGGCCTCAATATATAAACGTGCTGGGAAAGT
TAAATGTCTTGGTGCACCAAAACGTACAGGTATTGTCACAATTGTAGGTG
CAGTTTCTCCTCCTGAAAGAGAATTCTCAAAAACTGTAACTTCTTGCCAG
CCTCCCCATTGAGCAAGTCCTATCTAGGGTTAAGAAAAAAAAAATACCCA
AAAAAAGCATTTTCCCTTCTGTAAAATGGATTAATACTAAATCGAAATTA
TTCAACACCATTAAAATCTTTCCTTAAAACCAATTTAATCCGAAATTTTA
TTAAAACAAAGGAAAAAAGCTTGTAGGGGTGAAAACAAAAAAAAAATTAA
TCTAATAGTACTTTCTCACCTCGCTACAATAAGTAAGTTTTAGCTAAAAC
GATACACAAATCACCCAAAAAACTACAAAAGCTTTTTCAAGGACGGACTC
TCCTTATCCCATAAGAAATTATCTCCCAAAATAACAGCCTCCTCCCCTTT
CTTTTCACGTATTTTTTGGTAAAATACCCTAAAAATCTAACATCCTAATT
ATATAAATTCCACAAAAATAGAGATATACAAAAAAAAATAAAGCCATACA
ACTTCAAATGAAAACAAAAAAAAAACATTTTAATATCCTAACACTATTAT
GCTAAATGCATCCAATACGAAATAACTTCTTTTGATGAAAAAAAATCCTC
AAACCCCCACAAAACTATCTTCTCAAGACACCATCCCCAATCATCGAAGA
ACACATAAGAACACACATATCCTTATTTCTTTTCTTGTTTTTTTCACTAT
AATCATTAAAACAA
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