DY258646

Overview
NameDY258646
Unique NameDY258646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 6.821e-84
Identity = 153/210 (72.86%), Postives = 171/210 (81.43%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG--YGRGQGPSGARDGTVSQRGGCC 778
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N+ +GIK+G  +           G     GGCC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 8.909e-84
Identity = 153/210 (72.86%), Postives = 171/210 (81.43%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG--YGRGQGPSGARDGTVSQRGGCC 778
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N+ +GIK+G  +           G     GGCC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATLAGNQGGQQAGGGCC 212          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 7.542e-83
Identity = 153/210 (72.86%), Postives = 171/210 (81.43%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTV--SQRGGCC 778
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I Q IQ+G  D  N+ +GIK+G            G    +Q G CC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNEANGIKIGPQHSPASQSLNVGGSGGNQGGNCC 212          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.866e-82
Identity = 153/214 (71.50%), Postives = 174/214 (81.31%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG----YGRGQGPSGARDGT--VSQRGGCC 778
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV IDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH++ NM IML+GNK DL  RR V +EEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQ+G  D  N+ +GIK+G         GPS ++  +  +    GCC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSISTSVGPSASQRNSRDIGSNSGCC 216          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 303.138 bits (775), Expect = 1.422e-81
Identity = 150/210 (71.43%), Postives = 174/210 (82.86%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQ--RGGCC 778
            Y +LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID + IKLQIWDTAGQESFRSITRSYYRG+AGALLVYDITRR+TFNHL+ WL+DAR +AN NM+I+L+GNK D+  +RAVS EEG QFA ENGL+FLE SA+TA NVEEAF+ TA+KI + IQ+G  D  N+  GIK+G      P+  +DGT  +   GGCC
Sbjct:    2 YSFLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGDFDINNESFGIKLG-----APTSKQDGTDQKPAGGGCC 206          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.204e-80
Identity = 151/214 (70.56%), Postives = 171/214 (79.91%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG----YGRGQGPSGARDGT--VSQRGGCC 778
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV IDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH++ NM IML+GNK DL  RR V +EEGE FA+E+GL+F+E SA+TA NVEEA+I TA +I + IQ+G  D  N+ +GIK+G         GP   +     +    GCC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSITSSVGPCSPQQNVSDIGPDSGCC 216          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 253.832 bits (647), Expect = 9.896e-67
Identity = 129/209 (61.72%), Postives = 157/209 (75.12%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGAR--DGTVSQRGGC 775
            Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK DL  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QNIQ+G+LD    +SG++    +   P G R       QR GC
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQ---HKPSAPQGGRLTSEPQPQREGC 213          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 253.832 bits (647), Expect = 9.896e-67
Identity = 129/209 (61.72%), Postives = 157/209 (75.12%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGAR--DGTVSQRGGC 775
            Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK DL  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QNIQ+G+LD    +SG++    +   P G R       QR GC
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQ---HKPSAPQGGRLTSEPQPQREGC 213          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 253.832 bits (647), Expect = 9.896e-67
Identity = 129/209 (61.72%), Postives = 157/209 (75.12%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGAR--DGTVSQRGGC 775
            Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK DL  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QNIQ+G+LD    +SG++    +   P G R       QR GC
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQ---HKPSAPQGGRLTSEPQPQREGC 213          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 253.832 bits (647), Expect = 9.896e-67
Identity = 129/209 (61.72%), Postives = 157/209 (75.12%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGAR--DGTVSQRGGC 775
            Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK DL  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QNIQ+G+LD    +SG++    +   P G R       QR GC
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQ---HKPSAPQGGRLTSEPQPQREGC 213          
The following BLAST results are available for this feature:
BLAST of DY258646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_CANFA6.821e-8472.86Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2A_CHICK8.909e-8472.86Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2_LYMST7.542e-8372.86Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2B_HUMAN2.866e-8271.50Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB2A_DICDI1.422e-8171.43Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB2B_MOUSE1.204e-8070.56Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB14_RAT9.896e-6761.72Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB9.896e-6761.72Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG9.896e-6761.72Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE9.896e-6761.72Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258646 ID=DY258646; Name=DY258646; organism=Citrus clementina; type=EST; length=916bp
CGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTCTTCGTCTT
TTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGT
TGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAACAACAACAT
GTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACACTGGAGTAG
GGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTCAGCCCGTT
CATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTCACCATCGA
TGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCAAGAATCTT
TCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGGCACTTCTG
GTTTATGATATTACAAGGAGAGAGACATTTAATCATCTATCAAGCTGGCT
GGAGGATGCGCGGCAGCATGCTAATCCCAACATGTCAATCATGCTCGTTG
GTAACAAGTGTGATCTTGCTCATCGGAGGGCTGTTAGCAAGGAGGAAGGC
GAACAGTTTGCAAAGGAGAATGGGCTTCTGTTTCTGGAAGCATCTGCAAG
AACAGCTCAGAATGTTGAGGAGGCTTTTATAAAGACTGCTGCAAAGATCC
TTCAAAATATTCAGGAAGGAGCACTTGATGCAGTAAATGATCAGTCTGGA
ATTAAGGTTGGGTACGGACGCGGCCAAGGACCATCAGGTGCAAGAGATGG
AACCGTTTCACAGAGAGGTGGATGTTGCAGTTAAATTCATACGAATGTGG
ATTCTGTATTTCATCCCTTTCAGCCATTTATATAGGCCTTACCCCTAACT
TGGATATATCAGTCCAGTATTGTCACGCAAAAACCTGTGAGGGATATGAA
TGTAAAGATCTTATCT
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