DY258646

Overview
NameDY258646
Unique NameDY258646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.816e-44
Identity = 87/180 (48.33%), Postives = 122/180 (67.78%), Query Frame = 2
Query:  158 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQS 697
            DY+FK ++IGD+ VGK+ +L +F    F      TIGVEF  R + I  + +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R+TF+H+  WLE+ R HA+ N+ IML GNK DL  +RAV  E+ ++FA++ GL FLE SA  A  +E+AF+    +I   + +  L A  +QS
Sbjct:   13 DYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQS 192          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.816e-44
Identity = 81/165 (49.09%), Postives = 117/165 (70.91%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 649
            YDYLFK ++IGD+GVGK+C L +F++  F      TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F ++ +W+ +  +HA+P++  M++GNKCD   +R VS+E+GE+ A   G+ F+E SA+   N+E AF   A  I
Sbjct:    5 YDYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDI 169          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.372e-44
Identity = 95/208 (45.67%), Postives = 129/208 (62.02%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 778
            YDYLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R +  DG+ IKLQIWDTAGQE FR+IT SYYRGA G ++VYD T  E+FN++  WL +  ++AN ++  +L+GNK D+   + VS E G   A E G+ FLE SA+ + NVE+AF+  A +I + +  G+    N  SG      +GQ             GGCC
Sbjct:    5 YDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKM--GSQTNANKTSGPGTVQMKGQ-------PIQQNNGGCC 203          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.372e-44
Identity = 78/166 (46.99%), Postives = 123/166 (74.10%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 652
            YD+LFK ++IGD+GVGK+CL+++F +  F   +  TIG++F  R V I+G+ IKLQ+WDTAGQE F++IT +YYRGA G +LVYDIT  ++F ++ +W++  +++A+  +  +L+GNKCD+  +R V KE+ ++ A+E+G+ F E SA+++ NV+EAF   A  IL
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDIL 170          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.372e-44
Identity = 78/166 (46.99%), Postives = 123/166 (74.10%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 652
            YD+LFK ++IGD+GVGK+CL+++F +  F   +  TIG++F  R V I+G+ IKLQ+WDTAGQE F++IT +YYRGA G +LVYDIT  ++F ++ +W++  +++A+  +  +L+GNKCD+  +R V KE+ ++ A+E+G+ F E SA+++ NV+EAF   A  IL
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDIL 170          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.098e-44
Identity = 89/198 (44.95%), Postives = 128/198 (64.65%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARD 748
            YD + K +++GD+GVGKSCLLL+F + +F P    TIG++F  R +   G+ IKLQ+WDTAGQE FR+IT +YYRGA G +L+YD+T   +F ++ +W +   QHAN +  I LVGNKCD    R VSKE+G++ A +  + FLEASA++ +NV+  F + A+ I +   E  +  V   SG   G    Q  SGA++
Sbjct:   11 YDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEKHVEENIGGVGGASGAG-GIDVSQNNSGAKN 207          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.098e-44
Identity = 94/210 (44.76%), Postives = 134/210 (63.81%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQ--RGGCC 778
            YD LFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  + + +DG+ IKLQIWDTAGQE F +IT SYYRGA G L+VYD+T +E++ ++  WL++  +HA+ N++ +LVGNK DL  ++ V     ++FA   G+ FLE SA+ A NVE+AF+  AA+I + +  GA                G+ P+   D T  +   GGCC
Sbjct:    5 YDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASG-------------GERPNLKIDSTPVKPAGGGCC 201          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 5.284e-44
Identity = 89/197 (45.18%), Postives = 131/197 (66.50%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGAR 745
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T   +FN++  W+++ +++A  +++ +LVGNKCDL  ++ V      ++A   G+ FLE SA+++ NVE+AF+  A++I + +Q G     N      V    G  P G +
Sbjct:    5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEI-KKLQGGIQPNNNSTYNAHVVKPTGFTPIGKK 200          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.284e-44
Identity = 87/175 (49.71%), Postives = 117/175 (66.86%), Query Frame = 2
Query:  158 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 682
            +YLFK +IIGD+ VGKS LL ++    F P    TIGVEF  + + IDG+ +K QIWDTAGQE FR++T +YYRGA GAL+VYDITR  TF ++  WL++   H++  ++ ML+GNKCDL   RAVS EEG+  A+  GL F+E SA  + NV+ AF     +I  NI    L++
Sbjct:   10 EYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNS 184          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.901e-44
Identity = 78/166 (46.99%), Postives = 123/166 (74.10%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 652
            YD+LFK ++IGD+GVGK+CL+++F +  F   +  TIG++F  R V I+G+ IKLQ+WDTAGQE F++IT +YYRGA G +LVYDIT  ++F ++ +W++  +++A+  +  +L+GNKCD+  +R V KE+ ++ A+E+G+ F E SA+++ NV+EAF   A  IL
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDIL 170          
The following BLAST results are available for this feature:
BLAST of DY258646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_TOBAC1.816e-4448.33Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RAB8A_CHICK1.816e-4449.09Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RABD1_ARATH2.372e-4445.67Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB13_HUMAN2.372e-4446.99Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN2.372e-4446.99Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
SEC4_CANAL3.098e-4444.95Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB1C_HUMAN3.098e-4444.76Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB1B_DICDI5.284e-4445.18Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
ARA4_ARATH5.284e-4449.71Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RAB13_MESAU6.901e-4446.99Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258646 ID=DY258646; Name=DY258646; organism=Citrus clementina; type=EST; length=916bp
CGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTCTTCGTCTT
TTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGT
TGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAACAACAACAT
GTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACACTGGAGTAG
GGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTCAGCCCGTT
CATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTCACCATCGA
TGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCAAGAATCTT
TCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGGCACTTCTG
GTTTATGATATTACAAGGAGAGAGACATTTAATCATCTATCAAGCTGGCT
GGAGGATGCGCGGCAGCATGCTAATCCCAACATGTCAATCATGCTCGTTG
GTAACAAGTGTGATCTTGCTCATCGGAGGGCTGTTAGCAAGGAGGAAGGC
GAACAGTTTGCAAAGGAGAATGGGCTTCTGTTTCTGGAAGCATCTGCAAG
AACAGCTCAGAATGTTGAGGAGGCTTTTATAAAGACTGCTGCAAAGATCC
TTCAAAATATTCAGGAAGGAGCACTTGATGCAGTAAATGATCAGTCTGGA
ATTAAGGTTGGGTACGGACGCGGCCAAGGACCATCAGGTGCAAGAGATGG
AACCGTTTCACAGAGAGGTGGATGTTGCAGTTAAATTCATACGAATGTGG
ATTCTGTATTTCATCCCTTTCAGCCATTTATATAGGCCTTACCCCTAACT
TGGATATATCAGTCCAGTATTGTCACGCAAAAACCTGTGAGGGATATGAA
TGTAAAGATCTTATCT
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