DY258646

Overview
NameDY258646
Unique NameDY258646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 253.832 bits (647), Expect = 9.896e-67
Identity = 129/209 (61.72%), Postives = 157/209 (75.12%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGAR--DGTVSQRGGC 775
            Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK DL  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QNIQ+G+LD    +SG++    +   P G R       QR GC
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQ---HKPSAPQGGRLTSEPQPQREGC 213          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 253.832 bits (647), Expect = 9.896e-67
Identity = 129/209 (61.72%), Postives = 157/209 (75.12%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGAR--DGTVSQRGGC 775
            Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK DL  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QNIQ+G+LD    +SG++    +   P G R       QR GC
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQ---HKPSAPQGGRLTSEPQPQREGC 213          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 5.082e-63
Identity = 116/179 (64.80%), Postives = 144/179 (80.45%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 691
            Y+Y+FKYIIIGD GVGKSCLL QFT+ +F P    TIGVEFG R+V ++ + IKLQIWDTAGQE FR++TRSYYRGAAGALLVYDITRR T+NHL++WL DAR   NPN  IML+GNK DL  +R V+ EE   FAK+NGL+F+E+SA+T +NVEEAF++TA  I Q++QEG +D + D
Sbjct:    5 YEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQEGNVDLIPD 183          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 7.108e-57
Identity = 110/186 (59.14%), Postives = 138/186 (74.19%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG 712
            YD+LFK+++IG  G GKSCLL QF + +F+   + TIGVEFG+R+V + G+ +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+PN+ ++L GNK DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF+K A  IL  I  G LD     SGI+ G
Sbjct:    5 YDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPERMGSGIQYG 190          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 7.108e-57
Identity = 110/186 (59.14%), Postives = 138/186 (74.19%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG 712
            YD+LFK+++IG  G GKSCLL QF + +F+   + TIGVEFG+R+V + G+ +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+PN+ ++L GNK DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF+K A  IL  I  G LD     SGI+ G
Sbjct:    5 YDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPERMGSGIQYG 190          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 7.108e-57
Identity = 110/186 (59.14%), Postives = 138/186 (74.19%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG 712
            YD+LFK+++IG  G GKSCLL QF + +F+   + TIGVEFG+R+V + G+ +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+PN+ ++L GNK DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF+K A  IL  I  G LD     SGI+ G
Sbjct:    5 YDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPERMGSGIQYG 190          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 7.108e-57
Identity = 110/186 (59.14%), Postives = 138/186 (74.19%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG 712
            YD+LFK+++IG  G GKSCLL QF + +F+   + TIGVEFG+R+V + G+ +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+PN+ ++L GNK DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF+K A  IL  I  G LD     SGI+ G
Sbjct:    5 YDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPERMGSGIQYG 190          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 2.068e-56
Identity = 109/186 (58.60%), Postives = 141/186 (75.81%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG 712
            YD+LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG++++ + G+ +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF++ A KIL  I+ G LD     SGI+ G
Sbjct:    5 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERMGSGIQYG 190          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 2.068e-56
Identity = 109/186 (58.60%), Postives = 141/186 (75.81%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG 712
            YD+LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG++++ + G+ +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF++ A KIL  I+ G LD     SGI+ G
Sbjct:    5 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERMGSGIQYG 190          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.528e-56
Identity = 110/186 (59.14%), Postives = 138/186 (74.19%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG 712
            YD+LFK+++IG  G GKSCLL QF + +F+   + TIGVEFG+R+V + G+ +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+PN+ I+L GNK DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF+K A  I   I+ G LD     SGI+ G
Sbjct:    5 YDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARSIPNKIESGELDPERMGSGIQYG 190          
The following BLAST results are available for this feature:
BLAST of DY258646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_HUMAN9.896e-6761.72Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK9.896e-6761.72Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RAB14_DICDI5.082e-6364.80Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
RAB4B_RAT7.108e-5759.14Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE7.108e-5759.14Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB4B_HUMAN7.108e-5759.14Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]
RAB4B_CANFA7.108e-5759.14Ras-related protein Rab-4B OS=Canis familiaris GN=... [more]
RAB4A_HUMAN2.068e-5658.60Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB4A_BOVIN2.068e-5658.60Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RAB4B_DANRE3.528e-5659.14Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258646 ID=DY258646; Name=DY258646; organism=Citrus clementina; type=EST; length=916bp
CGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTCTTCGTCTT
TTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGT
TGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAACAACAACAT
GTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACACTGGAGTAG
GGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTCAGCCCGTT
CATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTCACCATCGA
TGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCAAGAATCTT
TCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGGCACTTCTG
GTTTATGATATTACAAGGAGAGAGACATTTAATCATCTATCAAGCTGGCT
GGAGGATGCGCGGCAGCATGCTAATCCCAACATGTCAATCATGCTCGTTG
GTAACAAGTGTGATCTTGCTCATCGGAGGGCTGTTAGCAAGGAGGAAGGC
GAACAGTTTGCAAAGGAGAATGGGCTTCTGTTTCTGGAAGCATCTGCAAG
AACAGCTCAGAATGTTGAGGAGGCTTTTATAAAGACTGCTGCAAAGATCC
TTCAAAATATTCAGGAAGGAGCACTTGATGCAGTAAATGATCAGTCTGGA
ATTAAGGTTGGGTACGGACGCGGCCAAGGACCATCAGGTGCAAGAGATGG
AACCGTTTCACAGAGAGGTGGATGTTGCAGTTAAATTCATACGAATGTGG
ATTCTGTATTTCATCCCTTTCAGCCATTTATATAGGCCTTACCCCTAACT
TGGATATATCAGTCCAGTATTGTCACGCAAAAACCTGTGAGGGATATGAA
TGTAAAGATCTTATCT
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