DY258646

Overview
NameDY258646
Unique NameDY258646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 3.528e-56
Identity = 109/186 (58.60%), Postives = 141/186 (75.81%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG 712
            YD+LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG++++ + G+ +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF++ A KIL  I+ G LD     SGI+ G
Sbjct:    5 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKILNKIESGELDPERMGSGIQYG 190          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 7.859e-56
Identity = 109/186 (58.60%), Postives = 141/186 (75.81%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG 712
            YD+LFK+++IG+ G GKSCLL QF +KRF+   + TIGVEFG++++++  + +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF++ A KIL  I+ G LD     SGI+ G
Sbjct:    5 YDFLFKFLVIGNAGTGKSCLLHQFIEKRFKDDSNHTIGVEFGSKIISVVNKFVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERMGSGIQYG 190          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.341e-55
Identity = 107/186 (57.53%), Postives = 141/186 (75.81%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG 712
            YD+LFK+++IG+ G GKSCLL QF +K+F+   + TIG+EFG++++ + G+ +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ ++L GNK DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF++ A KIL  I+ G LD     SGI+ G
Sbjct:    5 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKILNKIESGELDPERMGSGIQYG 190          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.795e-53
Identity = 99/170 (58.24%), Postives = 134/170 (78.82%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 664
            Y++LFKYI++GD+ VGKS LLLQF DKRF P  D TIGVEFG+R + I+ + IKLQIWDTAGQE FRSITR+YYRGA  A++VYDITRR++F  L+SWL D R+ ++ +++ +L+GNK DL   R VS  E ++FA++NGL+F E SA+TA NV+EAF K+  +IL+ ++
Sbjct:   21 YEHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLE 190          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 2.003e-51
Identity = 100/209 (47.85%), Postives = 139/209 (66.51%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H +PN+ +MLVGNK DL H  AV  +EG+ FA+   L F+E SA  + NVE AF +   +I + + + +++A +D      G G+G+  +   D +  ++GGCCS
Sbjct:   11 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGS---GPGKGEKINIKDDVSAVKKGGCCS 216          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.417e-51
Identity = 98/209 (46.89%), Postives = 137/209 (65.55%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  +   ++G+ +K QIWDTAGQE +R+IT +YYRGA GALL+YD+TR  TF + + WL + R H +PN+ +ML+GNKCDL H  AV  EE + FA+   L F+E SA  A NVE AF +   +I + + + ++D   + + +    G+G+  +   DG+V +R GCCS
Sbjct:   10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLP---GKGETINVKEDGSVLKRMGCCS 215          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.612e-51
Identity = 104/210 (49.52%), Postives = 139/210 (66.19%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPS-GARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKS +L +FT   F      TIGVEF  R + ++G+ +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R HA+ N+ IM+ GNK DL H RAVS+E+G+  A++ GL FLE SA  A N+E+AF     +I   I + AL A    S +      GQG +    D + +QR  CCS
Sbjct:    9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSNLP-----GQGTTINVADASANQRRSCCS 213          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.612e-51
Identity = 102/210 (48.57%), Postives = 138/210 (65.71%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGY-GRGQGPSGARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  + + +D + +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TRR TF + + WL++ R H +PN+ +ML+GNK DL H  AV  E+G+ FA+   L F+E SA  A NVE AF +   +I + + + A++A    SG   G   +GQ  +   D +V +R GCCS
Sbjct:   10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEA--GDSGSSSGLPSKGQTINVKEDSSVLKRFGCCS 217          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.942e-51
Identity = 98/209 (46.89%), Postives = 137/209 (65.55%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +D + IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++ +WL++ R H +PN+ +MLVGNK DL H  AV  E+ + FA++  L F+E SA  A NVE AF +   +I   + + A++A ++ + +     +G      +D +  ++GGCCS
Sbjct:   10 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVP---SKGDKIDIGKDVSAVKKGGCCS 215          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.934e-50
Identity = 97/179 (54.19%), Postives = 128/179 (71.51%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 691
            YDYLFK ++IGD+GVGKS LL++FT   F      TIGVEF  R + +D + IK QIWDTAGQE +R+IT +YYRGA GAL+VYDIT++ +F+++  WL++ R+HA+ N+ IMLVGNK DL H RAVS EE + FA EN L F+E SA  A NVEEAF     +I + +   +L+A +D
Sbjct:    7 YDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDD 185          
The following BLAST results are available for this feature:
BLAST of DY258646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB4A_RAT3.528e-5658.60Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]
RAB4A_DANRE7.859e-5658.60Ras-related protein Rab-4A OS=Danio rerio GN=rab4a... [more]
RAB4A_MOUSE1.341e-5557.53Ras-related protein Rab-4A OS=Mus musculus GN=Rab4... [more]
RAB2B_DICDI2.795e-5358.24Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RIC2_ORYSJ2.003e-5147.85Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1A_ARATH3.417e-5146.89Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB2BV_BETVU7.612e-5149.52Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11D_LOTJA7.612e-5148.57Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA1C_ARATH9.942e-5146.89Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
YPT3_SCHPO4.934e-5054.19GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2DC01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258646 ID=DY258646; Name=DY258646; organism=Citrus clementina; type=EST; length=916bp
CGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTCTTCGTCTT
TTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGT
TGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAACAACAACAT
GTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACACTGGAGTAG
GGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTCAGCCCGTT
CATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTCACCATCGA
TGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCAAGAATCTT
TCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGGCACTTCTG
GTTTATGATATTACAAGGAGAGAGACATTTAATCATCTATCAAGCTGGCT
GGAGGATGCGCGGCAGCATGCTAATCCCAACATGTCAATCATGCTCGTTG
GTAACAAGTGTGATCTTGCTCATCGGAGGGCTGTTAGCAAGGAGGAAGGC
GAACAGTTTGCAAAGGAGAATGGGCTTCTGTTTCTGGAAGCATCTGCAAG
AACAGCTCAGAATGTTGAGGAGGCTTTTATAAAGACTGCTGCAAAGATCC
TTCAAAATATTCAGGAAGGAGCACTTGATGCAGTAAATGATCAGTCTGGA
ATTAAGGTTGGGTACGGACGCGGCCAAGGACCATCAGGTGCAAGAGATGG
AACCGTTTCACAGAGAGGTGGATGTTGCAGTTAAATTCATACGAATGTGG
ATTCTGTATTTCATCCCTTTCAGCCATTTATATAGGCCTTACCCCTAACT
TGGATATATCAGTCCAGTATTGTCACGCAAAAACCTGTGAGGGATATGAA
TGTAAAGATCTTATCT
back to top