DY258646

Overview
NameDY258646
Unique NameDY258646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 6.444e-50
Identity = 102/209 (48.80%), Postives = 135/209 (64.59%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  + + IDG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF     WL++ R H +PN+ +ML+GNK DL H   VS E+G+ FA++  L F+E SA  A NVE AF +   +I + + + A++A  D+    V   +GQ  +   D +V  R  CCS
Sbjct:   10 YDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEA-GDRPSTSVVPSQGQTINVNEDSSVLNRYRCCS 217          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.436e-49
Identity = 103/210 (49.05%), Postives = 136/210 (64.76%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQ-GPSGARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYDIT+  TF ++  WL++ R HA+ N+ IMLVGNK DL H R V  E  + F +  GL F+E SA  + NVE+AF +   +I   + +  LD+ +++   K+G GR       A D    ++GGCCS
Sbjct:    9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRP--KIGEGRDVIVIDNAHDDGGKKKGGCCS 216          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.449e-49
Identity = 96/208 (46.15%), Postives = 138/208 (66.35%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 778
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCDL  ++ V     ++FA   G+ FLE SA+ A NVE+AF+  AA+I + +  GA    +++S + +                S  GGCC
Sbjct:    5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNI----------QSTPVKSSGGGCC 202          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.177e-49
Identity = 101/210 (48.10%), Postives = 139/210 (66.19%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPS-GARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKS +L +FT   F      TIGVEF  R + ++G+ +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R HA+ N+ IM+ GNK DL H RAVS+++G   +++ GL FLE SA  A N+E+AF     +I   + + AL A    +G  V    GQG +    D + + + GCCS
Sbjct:    9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASV---PGQGTTINVADTSGNTKKGCCS 215          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.177e-49
Identity = 97/209 (46.41%), Postives = 136/209 (65.07%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TRR TF ++  WL++ + H +PN+ +MLVGNK DL H  AV  E+G+ +A++  L F+E SA  A NVE+AF +   +I +   +  ++A  D +       +G+      D +  ++ GCCS
Sbjct:   10 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGN---ASVPKGEKIEVKNDVSALKKLGCCS 215          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 5.455e-49
Identity = 97/208 (46.63%), Postives = 140/208 (67.31%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 778
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCDL  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I + +  GA     ++S +K+     Q     + G     GGCC
Sbjct:    8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI-----QSTPVKQSG-----GGCC 205          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 5.455e-49
Identity = 97/208 (46.63%), Postives = 140/208 (67.31%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 778
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCDL  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I + +  GA     ++S +K+     Q     + G     GGCC
Sbjct:    8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI-----QSTPVKQSG-----GGCC 205          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 5.455e-49
Identity = 97/208 (46.63%), Postives = 140/208 (67.31%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 778
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCDL  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I + +  GA     ++S +K+     Q     + G     GGCC
Sbjct:    8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI-----QSTPVKQSG-----GGCC 205          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 5.455e-49
Identity = 97/208 (46.63%), Postives = 140/208 (67.31%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 778
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCDL  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I + +  GA     ++S +K+     Q     + G     GGCC
Sbjct:    8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI-----QSTPVKQSG-----GGCC 205          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.215e-48
Identity = 97/209 (46.41%), Postives = 137/209 (65.55%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  + + ID + IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  T+ +++ WL++ R H +PN+ +ML+GNK DL H  AVS +E +  A+  GL F+E SA  A NVE AF +   +I + + + A++A  D+        +G+  +   +G+  ++ GCCS
Sbjct:   10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEA-GDEGATSSAPPKGETINIKDEGSSWKKFGCCS 217          
The following BLAST results are available for this feature:
BLAST of DY258646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11E_LOTJA6.444e-5048.80Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
YPTC6_CHLRE1.436e-4949.05Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RAB1_DISOM2.449e-4946.15Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RB11C_LOTJA4.177e-4948.10Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RAA1B_ARATH4.177e-4946.41Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RAB1A_RAT5.455e-4946.63Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE5.455e-4946.63Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN5.455e-4946.63Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA5.455e-4946.63Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
YPT3_NICPL1.215e-4846.41Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258646 ID=DY258646; Name=DY258646; organism=Citrus clementina; type=EST; length=916bp
CGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTCTTCGTCTT
TTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGT
TGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAACAACAACAT
GTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACACTGGAGTAG
GGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTCAGCCCGTT
CATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTCACCATCGA
TGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCAAGAATCTT
TCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGGCACTTCTG
GTTTATGATATTACAAGGAGAGAGACATTTAATCATCTATCAAGCTGGCT
GGAGGATGCGCGGCAGCATGCTAATCCCAACATGTCAATCATGCTCGTTG
GTAACAAGTGTGATCTTGCTCATCGGAGGGCTGTTAGCAAGGAGGAAGGC
GAACAGTTTGCAAAGGAGAATGGGCTTCTGTTTCTGGAAGCATCTGCAAG
AACAGCTCAGAATGTTGAGGAGGCTTTTATAAAGACTGCTGCAAAGATCC
TTCAAAATATTCAGGAAGGAGCACTTGATGCAGTAAATGATCAGTCTGGA
ATTAAGGTTGGGTACGGACGCGGCCAAGGACCATCAGGTGCAAGAGATGG
AACCGTTTCACAGAGAGGTGGATGTTGCAGTTAAATTCATACGAATGTGG
ATTCTGTATTTCATCCCTTTCAGCCATTTATATAGGCCTTACCCCTAACT
TGGATATATCAGTCCAGTATTGTCACGCAAAAACCTGTGAGGGATATGAA
TGTAAAGATCTTATCT
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