DY258646

Overview
NameDY258646
Unique NameDY258646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RABH_DICDI (Ras-related protein RabH OS=Dictyostelium discoideum GN=rabH PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.697e-22
Identity = 63/161 (39.13%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  170 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 652
            K  IIGD  VGKS LL +F +  F     L++G  F  + V I G  I LQI DT+G E FRS+  S+Y    G L+VYDI+ +ETF +   WL +A + A  +   ++V +K DL   + V     + +A    L F E S++ + NVEE FI     IL
Sbjct:    9 KLTIIGDWNVGKSSLLYRFFNDVFYEQTKLSMGEHFFYKTVLIRGESIDLQITDTSGMEKFRSLNNSFYSNLDGILIVYDISDQETFENTKLWLNEANKLAPKDCIKIIVASKFDL-ENKVVDSNIVKSYADNLNLKFFETSSKNSINVEETFITLVEDIL 168          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB28_HUMAN (Ras-related protein Rab-28 OS=Homo sapiens GN=RAB28 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 9.697e-22
Identity = 61/169 (36.09%), Postives = 88/169 (52.07%), Query Frame = 2
Query:  158 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 652
            D   K +++GD   GK+ L   F  + F   +  TIG++F  R +T+ G   + LQIWD  GQ     +   Y  GA G LLVYDIT  ++F +L  W   ++   + +     + LVGNK DL H R +  E+  +F +ENG      SA+T  +V   F K AA+IL
Sbjct:   10 DRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 178          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAS2_NEUCR (Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.266e-21
Identity = 64/189 (33.86%), Postives = 98/189 (51.85%), Query Frame = 2
Query:  164 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ------------------HANPN--MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 670
            L+K +++GD GVGK+ L +Q   + F   +D TI   +  + V IDG+   L++ DTAGQE + ++   + R   G +LVY I+ R +F  +  +    ++                    NP+  + IMLVGNK D    R VS +EG   A+E G  F EASA+T  NVE+AF     ++ +  Q+G
Sbjct:    8 LYKLVVLGDGGVGKTALTIQLCLEHFVETYDPTIEDSY-RKQVVIDGQACMLEVLDTAGQEEYTALRDQWIRDGEGFVLVYSISSRSSFARIKKFHHQIQRVKESTSSPSAYPGSSPLAATNPSAPVPIMLVGNKSDRVTEREVSTQEGHALARELGCEFTEASAKTRTNVEKAFYDVVKQLRKQRQQG 195          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB28_PONAB (Ras-related protein Rab-28 OS=Pongo abelii GN=RAB28 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.266e-21
Identity = 61/169 (36.09%), Postives = 88/169 (52.07%), Query Frame = 2
Query:  158 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 652
            D   K +++GD   GK+ L   F  + F   +  TIG++F  R +T+ G   + LQIWD  GQ     +   Y  GA G LLVYDIT  ++F +L  W   ++   + +     + LVGNK DL H R +  E+  +F +ENG      SA+T  +V   F K AA+IL
Sbjct:   10 DRQLKIVVLGDGASGKTSLATCFAQETFGKRYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETRPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 178          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAPA_DICDI (Ras-related protein rapA OS=Dictyostelium discoideum GN=rapA PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.654e-21
Identity = 63/163 (38.65%), Postives = 89/163 (54.60%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKI 649
            FK +++G  GVGKS L +QF    F   +D TI   +  + V +D     L+I DTAG E F ++   Y +   G +LVY I    TFN L    E   R     ++ ++LVGNKCDL  +R +S E+GE+ A++ G   FLEASA+   NVE+ F     +I
Sbjct:    6 FKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDSNQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSIISNSTFNELPDLREQILRVKDCEDVPMVLVGNKCDLHDQRVISTEQGEELARKFGDCYFLEASAKNKVNVEQIFYNLIRQI 167          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RALB_MACFA (Ras-related protein Ral-B OS=Macaca fascicularis GN=RALB PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.654e-21
Identity = 63/185 (34.05%), Postives = 101/185 (54.59%), Query Frame = 2
Query:  164 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR--QHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG 712
            L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQE + +I  +Y+R   G LLV+ IT  E+F   + + E     +     + +++VGNK DL  RR V  EE    A+E G+ ++E SA+T  NV++ F      +++ I+   +    D++G K G
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFF----DLMREIRTKKMSENKDKNGKKSG 193          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAS3_DROME (Ras-like protein 3 OS=Drosophila melanogaster GN=R PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.160e-21
Identity = 60/162 (37.04%), Postives = 86/162 (53.09%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 649
            +K +++G  GVGKS L +QF    F   +D TI   +  + V +DG+   L+I DTAG E F ++   Y +   G +LVY IT + TFN L    E   R     ++ ++LVGNKCDL   R V KE G+  A +    F+E SA+   NV + F     +I
Sbjct:    4 YKIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKELGKNLATQFNCAFMETSAKAKVNVNDIFYDLVRQI 164          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAS3_RHIRA (Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.821e-21
Identity = 62/171 (36.26%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI--LQNIQEG 670
            +K +I+G  GVGKS L +QF    F   +D TI   +  + V ID     L + DTAGQE + ++   Y R   G +LVY IT R +F  ++++ +  R+  +  +  ++LVGNKCDL   R VS +EG   AK  G  F E SA+    V++ F +   +I  +   QEG
Sbjct:   10 YKIVIVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDDETALLDVLDTAGQEEYSAMREQYMRNGEGFVLVYSITSRLSFEEVNTFYQQIRRVKDRDSFPMVLVGNKCDLEGDRQVSSQEGRDLAKSFGCPFSETSAKQRIRVDDTFYEVVREIRRMNKEQEG 179          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAS2_YEAST (Ras-like protein 2 OS=Saccharomyces cerevisiae GN=RAS2 PE=1 SV=4)

HSP 1 Score: 102.834 bits (255), Expect = 2.821e-21
Identity = 62/165 (37.58%), Postives = 93/165 (56.36%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 658
            +K +++G  GVGKS L +Q T   F   +D TI   +  + V ID     L I DTAGQE + ++   Y R   G LLVY IT + + + L ++ +   R      + I++VGNK DL + + VS ++G   AK+    FLE SA+ A NVEEAF  T A+++++
Sbjct:   11 YKLVVVGGGGVGKSALTIQLTQSHFVDEYDPTIEDSY-RKQVVIDDEVSILDILDTAGQEEYSAMREQYMRNGEGFLLVYSITSKSSLDELMTYYQQILRVKDTDYVPIVVVGNKSDLENEKQVSYQDGLNMAKQMNAPFLETSAKQAINVEEAFY-TLARLVRD 173          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAP1B_RAT (Ras-related protein Rap-1b OS=Rattus norvegicus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.821e-21
Identity = 61/163 (37.42%), Postives = 89/163 (54.60%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 649
            +K +++G  GVGKS L +QF    F   +D TI   +  + V +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL   R V KE+G+  A++ +   FLE+SA++  NV E F     +I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWSNCAFLESSAKSKINVNEIFYDLVRQI 165          
The following BLAST results are available for this feature:
BLAST of DY258646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABH_DICDI9.697e-2239.13Ras-related protein RabH OS=Dictyostelium discoide... [more]
RAB28_HUMAN9.697e-2236.09Ras-related protein Rab-28 OS=Homo sapiens GN=RAB2... [more]
RAS2_NEUCR1.266e-2133.86Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 S... [more]
RAB28_PONAB1.266e-2136.09Ras-related protein Rab-28 OS=Pongo abelii GN=RAB2... [more]
RAPA_DICDI1.654e-2138.65Ras-related protein rapA OS=Dictyostelium discoide... [more]
RALB_MACFA1.654e-2134.05Ras-related protein Ral-B OS=Macaca fascicularis G... [more]
RAS3_DROME2.160e-2137.04Ras-like protein 3 OS=Drosophila melanogaster GN=R... [more]
RAS3_RHIRA2.821e-2136.26Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3... [more]
RAS2_YEAST2.821e-2137.58Ras-like protein 2 OS=Saccharomyces cerevisiae GN=... [more]
RAP1B_RAT2.821e-2137.42Ras-related protein Rap-1b OS=Rattus norvegicus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2DC01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258646 ID=DY258646; Name=DY258646; organism=Citrus clementina; type=EST; length=916bp
CGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTCTTCGTCTT
TTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGT
TGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAACAACAACAT
GTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACACTGGAGTAG
GGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTCAGCCCGTT
CATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTCACCATCGA
TGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCAAGAATCTT
TCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGGCACTTCTG
GTTTATGATATTACAAGGAGAGAGACATTTAATCATCTATCAAGCTGGCT
GGAGGATGCGCGGCAGCATGCTAATCCCAACATGTCAATCATGCTCGTTG
GTAACAAGTGTGATCTTGCTCATCGGAGGGCTGTTAGCAAGGAGGAAGGC
GAACAGTTTGCAAAGGAGAATGGGCTTCTGTTTCTGGAAGCATCTGCAAG
AACAGCTCAGAATGTTGAGGAGGCTTTTATAAAGACTGCTGCAAAGATCC
TTCAAAATATTCAGGAAGGAGCACTTGATGCAGTAAATGATCAGTCTGGA
ATTAAGGTTGGGTACGGACGCGGCCAAGGACCATCAGGTGCAAGAGATGG
AACCGTTTCACAGAGAGGTGGATGTTGCAGTTAAATTCATACGAATGTGG
ATTCTGTATTTCATCCCTTTCAGCCATTTATATAGGCCTTACCCCTAACT
TGGATATATCAGTCCAGTATTGTCACGCAAAAACCTGTGAGGGATATGAA
TGTAAAGATCTTATCT
back to top