DY258646

Overview
NameDY258646
Unique NameDY258646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RALB_RAT (Ras-related protein Ral-B OS=Rattus norvegicus GN=Ralb PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.821e-21
Identity = 63/185 (34.05%), Postives = 101/185 (54.59%), Query Frame = 2
Query:  164 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR--QHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG 712
            L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQE + +I  +Y+R   G LLV+ IT  E+F   + + E     +     + +++VGNK DL  RR V  EE    A+E G+ ++E SA+T  NV++ F      +++ I+   +    D++G K G
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARGKAEEWGVQYVETSAKTRANVDKVFF----DLMREIRAKKMSENKDKNGRKSG 193          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB28_BOVIN (Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.821e-21
Identity = 60/169 (35.50%), Postives = 88/169 (52.07%), Query Frame = 2
Query:  158 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 652
            D   K +++GD   GK+ L   F  + F   +  TIG++F  R +T+ G   + LQ+WD  GQ     +   Y  GA G LLVYD+T  ++F +L  W   ++   + +     + LVGNK DL H R V  E+  +F +ENG      SA+T  +V   F K AA+IL
Sbjct:   10 DRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGSLNVTLQVWDIGGQTIGGKMLDKYIYGAQGVLLVYDVTNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 178          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RRAS_HUMAN (Ras-related protein R-Ras OS=Homo sapiens GN=RRAS PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.685e-21
Identity = 63/184 (34.24%), Postives = 97/184 (52.72%), Query Frame = 2
Query:  170 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYG 718
            K +++G  GVGKS L +QF    F   +D TI   +  ++ ++DG P +L I DTAGQE F ++   Y R   G LLV+ I  R++FN +   + +  R     +  ++LVGNK DL  +R V + E   F   + + + EASA+   NV+EAF +   + ++  QE  L      +  K G G
Sbjct:   31 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF-EQLVRAVRKYQEQELPPSPPSAPRKKGGG 212          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RB32B_DICDI (Ras-related protein Rab-32B OS=Dictyostelium discoideum GN=rab32B PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.812e-21
Identity = 60/171 (35.09%), Postives = 98/171 (57.31%), Query Frame = 2
Query:  161 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH---ANPN-MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 655
            +L+K ++IGD  VGKS ++ ++    F P + LTIGV+F  + +  +  + + LQ+WD AG E F ++TR YYR A  A++V+D++R  TF+ ++ W ED       AN   + ++L+ NK DL+    V  E  ++F KEN  + +   SA    N+ EA      +IL+
Sbjct:   58 HLYKVLLIGDYAVGKSSIIKRYCTGIFSPNYKLTIGVDFSVKDIEWEKNKIVSLQLWDIAGHERFGTMTRVYYRYAIAAIIVFDLSRPSTFDAVTKWREDVNSKVVLANQEPIPVLLLANKSDLS-TSYVDSEMLDRFCKENNFIGWFATSASNDTNINEAMHFLTKEILE 227          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAS_CRYNE (Ras-like protein OS=Cryptococcus neoformans GN=RAS1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.812e-21
Identity = 70/206 (33.98%), Postives = 101/206 (49.03%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE-GALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 778
            +K +++G  GVGKS L +QF    F   +D TI   +  + + ID     L + DTAGQE + ++   Y R   G LLVY IT R +F  +S++ +   R        +++V NKCDL + R V   EG   AK      +E SA+   NV+EAFI     I +  +E G   AVN  +  K       G +  +D  V +  GCC
Sbjct:   10 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCI-IDEEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRSSFEEVSTFHQQILRVKDKDYFPVVVVANKCDLEYERQVQPHEGRDLAKRFNAQCIETSAKQRVNVDEAFIAVVRAIRRYQKESGPPQAVN--APAKSQMSAVGGRAAEKDDHVDK--GCC 210          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RALB_PONAB (Ras-related protein Ral-B OS=Pongo abelii GN=RALB PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.812e-21
Identity = 62/183 (33.88%), Postives = 100/183 (54.64%), Query Frame = 2
Query:  164 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR--QHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIK 706
            L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQE + +I  +Y+R   G LLV+ IT  E+F   + + E     +     + +++VGNK DL  RR V  EE    A+E G+ ++E SA+T  NV++ F      +++ I+   +    D++G K
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFF----DLMREIRTKKMSENKDKNGKK 191          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RALB_HUMAN (Ras-related protein Ral-B OS=Homo sapiens GN=RALB PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.812e-21
Identity = 62/183 (33.88%), Postives = 100/183 (54.64%), Query Frame = 2
Query:  164 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR--QHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIK 706
            L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQE + +I  +Y+R   G LLV+ IT  E+F   + + E     +     + +++VGNK DL  RR V  EE    A+E G+ ++E SA+T  NV++ F      +++ I+   +    D++G K
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFF----DLMREIRTKKMSENKDKNGKK 191          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RALBA_XENLA (Ras-related protein ralB-A OS=Xenopus laevis GN=ralb-A PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.812e-21
Identity = 62/185 (33.51%), Postives = 101/185 (54.59%), Query Frame = 2
Query:  164 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR--QHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG 712
            L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQE + +I  +Y+R   G LLV+ IT  E+F   + + E     +     + +++VGNK DL  RR V  +E    A+E G+ ++E SA+T  NV++ F      +++ I+   +    D++G K G
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLIVGNKSDLEDRRQVPMDEARGKAEEWGVQYVETSAKTRANVDKVFF----DLMREIRTKKMSENKDKNGKKSG 193          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB28_RAT (Ras-related protein Rab-28 OS=Rattus norvegicus GN=Rab28 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.812e-21
Identity = 60/169 (35.50%), Postives = 88/169 (52.07%), Query Frame = 2
Query:  158 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 652
            D   K +++GD   GK+ L   F  + F   +  TIG++F  R +T+ G   + LQ+WD  GQ     +   Y  GA G LLVYDIT  ++F +L  W   ++   + +     + LVGNK DL H R V  ++  +F +ENG      SA+T  +V   F K AA+IL
Sbjct:   10 DRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 178          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB28_MOUSE (Ras-related protein Rab-28 OS=Mus musculus GN=Rab28 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.812e-21
Identity = 60/169 (35.50%), Postives = 88/169 (52.07%), Query Frame = 2
Query:  158 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 652
            D   K +++GD   GK+ L   F  + F   +  TIG++F  R +T+ G   + LQ+WD  GQ     +   Y  GA G LLVYDIT  ++F +L  W   ++   + +     + LVGNK DL H R V  ++  +F +ENG      SA+T  +V   F K AA+IL
Sbjct:   10 DRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKADKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 178          
The following BLAST results are available for this feature:
BLAST of DY258646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RALB_RAT2.821e-2134.05Ras-related protein Ral-B OS=Rattus norvegicus GN=... [more]
RAB28_BOVIN2.821e-2135.50Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 ... [more]
RRAS_HUMAN3.685e-2134.24Ras-related protein R-Ras OS=Homo sapiens GN=RRAS ... [more]
RB32B_DICDI4.812e-2135.09Ras-related protein Rab-32B OS=Dictyostelium disco... [more]
RAS_CRYNE4.812e-2133.98Ras-like protein OS=Cryptococcus neoformans GN=RAS... [more]
RALB_PONAB4.812e-2133.88Ras-related protein Ral-B OS=Pongo abelii GN=RALB ... [more]
RALB_HUMAN4.812e-2133.88Ras-related protein Ral-B OS=Homo sapiens GN=RALB ... [more]
RALBA_XENLA4.812e-2133.51Ras-related protein ralB-A OS=Xenopus laevis GN=ra... [more]
RAB28_RAT4.812e-2135.50Ras-related protein Rab-28 OS=Rattus norvegicus GN... [more]
RAB28_MOUSE4.812e-2135.50Ras-related protein Rab-28 OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258646 ID=DY258646; Name=DY258646; organism=Citrus clementina; type=EST; length=916bp
CGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTCTTCGTCTT
TTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGT
TGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAACAACAACAT
GTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACACTGGAGTAG
GGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTCAGCCCGTT
CATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTCACCATCGA
TGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCAAGAATCTT
TCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGGCACTTCTG
GTTTATGATATTACAAGGAGAGAGACATTTAATCATCTATCAAGCTGGCT
GGAGGATGCGCGGCAGCATGCTAATCCCAACATGTCAATCATGCTCGTTG
GTAACAAGTGTGATCTTGCTCATCGGAGGGCTGTTAGCAAGGAGGAAGGC
GAACAGTTTGCAAAGGAGAATGGGCTTCTGTTTCTGGAAGCATCTGCAAG
AACAGCTCAGAATGTTGAGGAGGCTTTTATAAAGACTGCTGCAAAGATCC
TTCAAAATATTCAGGAAGGAGCACTTGATGCAGTAAATGATCAGTCTGGA
ATTAAGGTTGGGTACGGACGCGGCCAAGGACCATCAGGTGCAAGAGATGG
AACCGTTTCACAGAGAGGTGGATGTTGCAGTTAAATTCATACGAATGTGG
ATTCTGTATTTCATCCCTTTCAGCCATTTATATAGGCCTTACCCCTAACT
TGGATATATCAGTCCAGTATTGTCACGCAAAAACCTGTGAGGGATATGAA
TGTAAAGATCTTATCT
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