DY258646

Overview
NameDY258646
Unique NameDY258646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAP1A_RAT (Ras-related protein Rap-1A OS=Rattus norvegicus GN=Rap1a PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.829e-20
Identity = 61/163 (37.42%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 649
            +K +++G  GVGKS L +QF    F   +D TI   +  + V +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL   R V KE+G+  A++     FLE+SA++  NV E F     +I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAP1A_MOUSE (Ras-related protein Rap-1A OS=Mus musculus GN=Rap1a PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.829e-20
Identity = 61/163 (37.42%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 649
            +K +++G  GVGKS L +QF    F   +D TI   +  + V +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL   R V KE+G+  A++     FLE+SA++  NV E F     +I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAP1A_HUMAN (Ras-related protein Rap-1A OS=Homo sapiens GN=RAP1A PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.829e-20
Identity = 61/163 (37.42%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 649
            +K +++G  GVGKS L +QF    F   +D TI   +  + V +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL   R V KE+G+  A++     FLE+SA++  NV E F     +I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAP1A_BOVIN (Ras-related protein Rap-1A OS=Bos taurus GN=RAP1A PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.829e-20
Identity = 61/163 (37.42%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 649
            +K +++G  GVGKS L +QF    F   +D TI   +  + V +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL   R V KE+G+  A++     FLE+SA++  NV E F     +I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RASH_RAT (GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.388e-20
Identity = 62/182 (34.07%), Postives = 99/182 (54.40%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN--DQSGI 703
            +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  A+  G+ ++E SA+T Q VE+AF      +++ I++  L  +N  D+SG+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY----TLVREIRQHKLRKLNPPDESGL 179          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RASH_MSVNS (GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RAS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.388e-20
Identity = 58/165 (35.15%), Postives = 89/165 (53.94%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 658
            +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct:    4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RALA_SAGOE (Ras-related protein Ral-A OS=Saguinus oedipus GN=RALA PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.388e-20
Identity = 61/182 (33.52%), Postives = 101/182 (55.49%), Query Frame = 2
Query:  164 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIK 706
            L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL  +R VS EE +  A +  + ++E SA+T  NV++ F      +++ I+   ++   +++G K
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFF----DLMREIRARKMEDSKEKNGKK 190          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RALA_RAT (Ras-related protein Ral-A OS=Rattus norvegicus GN=Rala PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.388e-20
Identity = 61/182 (33.52%), Postives = 101/182 (55.49%), Query Frame = 2
Query:  164 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIK 706
            L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL  +R VS EE +  A +  + ++E SA+T  NV++ F      +++ I+   ++   +++G K
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFF----DLMREIRARKMEDSKEKNGKK 190          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RALA_MOUSE (Ras-related protein Ral-A OS=Mus musculus GN=Rala PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.388e-20
Identity = 61/182 (33.52%), Postives = 101/182 (55.49%), Query Frame = 2
Query:  164 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIK 706
            L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL  +R VS EE +  A +  + ++E SA+T  NV++ F      +++ I+   ++   +++G K
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFF----DLMREIRARKMEDSKEKNGKK 190          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB6A_RAT (Ras-related protein Rab-6A (Fragment) OS=Rattus norvegicus GN=Rab6a PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.388e-20
Identity = 50/106 (47.17%), Postives = 70/106 (66.04%), Query Frame = 2
Query:  332 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 649
            TAGQE FRS+  SY R +  A++VYDIT   +F   + W++D R     ++ IMLVGNK DLA +R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct:    1 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 106          
The following BLAST results are available for this feature:
BLAST of DY258646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP1A_RAT1.829e-2037.42Ras-related protein Rap-1A OS=Rattus norvegicus GN... [more]
RAP1A_MOUSE1.829e-2037.42Ras-related protein Rap-1A OS=Mus musculus GN=Rap1... [more]
RAP1A_HUMAN1.829e-2037.42Ras-related protein Rap-1A OS=Homo sapiens GN=RAP1... [more]
RAP1A_BOVIN1.829e-2037.42Ras-related protein Rap-1A OS=Bos taurus GN=RAP1A ... [more]
RASH_RAT2.388e-2034.07GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=... [more]
RASH_MSVNS2.388e-2035.15GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RA... [more]
RALA_SAGOE2.388e-2033.52Ras-related protein Ral-A OS=Saguinus oedipus GN=R... [more]
RALA_RAT2.388e-2033.52Ras-related protein Ral-A OS=Rattus norvegicus GN=... [more]
RALA_MOUSE2.388e-2033.52Ras-related protein Ral-A OS=Mus musculus GN=Rala ... [more]
RAB6A_RAT2.388e-2047.17Ras-related protein Rab-6A (Fragment) OS=Rattus no... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258646 ID=DY258646; Name=DY258646; organism=Citrus clementina; type=EST; length=916bp
CGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTCTTCGTCTT
TTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGT
TGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAACAACAACAT
GTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACACTGGAGTAG
GGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTCAGCCCGTT
CATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTCACCATCGA
TGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCAAGAATCTT
TCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGGCACTTCTG
GTTTATGATATTACAAGGAGAGAGACATTTAATCATCTATCAAGCTGGCT
GGAGGATGCGCGGCAGCATGCTAATCCCAACATGTCAATCATGCTCGTTG
GTAACAAGTGTGATCTTGCTCATCGGAGGGCTGTTAGCAAGGAGGAAGGC
GAACAGTTTGCAAAGGAGAATGGGCTTCTGTTTCTGGAAGCATCTGCAAG
AACAGCTCAGAATGTTGAGGAGGCTTTTATAAAGACTGCTGCAAAGATCC
TTCAAAATATTCAGGAAGGAGCACTTGATGCAGTAAATGATCAGTCTGGA
ATTAAGGTTGGGTACGGACGCGGCCAAGGACCATCAGGTGCAAGAGATGG
AACCGTTTCACAGAGAGGTGGATGTTGCAGTTAAATTCATACGAATGTGG
ATTCTGTATTTCATCCCTTTCAGCCATTTATATAGGCCTTACCCCTAACT
TGGATATATCAGTCCAGTATTGTCACGCAAAAACCTGTGAGGGATATGAA
TGTAAAGATCTTATCT
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