DY258646

Overview
NameDY258646
Unique NameDY258646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258646_ssr59 microsatellite DY258646_ssr59:59..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15188 contig Ccv1_Contig15188:309..1228. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAS1_DROAN (Ras-like protein 1 OS=Drosophila ananassae GN=Ras85D PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.022e-19
Identity = 55/162 (33.95%), Postives = 90/162 (55.56%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 649
            +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R   G LLV+ +   ++F  + ++ E  ++  +   + ++LVGNKCDLA    V+ E+  + AK+ G+ ++E SA+T   V++AF     +I
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREI 163          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAC2_LOTJA (Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.022e-19
Identity = 58/174 (33.33%), Postives = 93/174 (53.45%), Query Frame = 2
Query:  170 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR----------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQ 655
            K + +GD  VGK+C+L+ +T   F   +  T+   F A +V +DG  + L +WDTAGQE +  +    YRGA   LL + +  R ++ ++S  W+ + R +A P + I+LVG K DL   R           ++  +GE+  K  G  ++LE S++T QNV+  F      +LQ
Sbjct:    8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYA-PTVPIVLVGTKLDLREDRQYLIDHPGATPITTAQGEELKKAIGAAVYLECSSKTQQNVKAVFDAAIKVVLQ 179          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RASK_MELGA (GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.641e-19
Identity = 57/172 (33.14%), Postives = 93/172 (54.07%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 679
            +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDL   R V  ++ +  A+  G+ F+E SA+T Q V++AF     +I ++ ++ + D
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKD 173          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAS2_RHIRA (Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.641e-19
Identity = 58/168 (34.52%), Postives = 85/168 (50.60%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 667
            +K +++GD GVGKS + +QF    F   +D TI   +  +   ID     L I DTAGQE + ++   + R   G +L+Y IT   TF  +    E  AR     +  ++LVGNKCDL   R V    G   AK+    F EASA+    +++AF     +I ++ QE
Sbjct:   12 YKIVMVGDGGVGKSAMTIQFIQSTFVDEYDPTIEDSY-RKQCLIDSECAMLDILDTAGQEEYSAMRERFMRNGEGFVLIYSITSYHTFEQVQKLHEQIARVKDLEHFPMVLVGNKCDLEQDRQVPTSAGRDLAKQYNCQFFEASAKQNVRIQDAFHGLVREIRRSQQE 178          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAS1_DROVI (Ras-like protein 1 OS=Drosophila virilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.641e-19
Identity = 55/162 (33.95%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 649
            +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R   G LLV+ +   ++F  + ++ E  ++  +   + ++LVGNKCDLA    V  E+  + AK+ G+ ++E SA+T   V++AF     +I
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VQNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREI 163          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAP2C_MOUSE (Ras-related protein Rap-2c OS=Mus musculus GN=Rap2c PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.641e-19
Identity = 59/177 (33.33%), Postives = 92/177 (51.98%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 694
            +K +++G  GVGKS L +QF    F   +D TI  +F  + + +D  P  L+I DTAG E F S+   Y +   G +LVY +  +++F  +    +   R      + ++LVGNK DL   R V   EG   A+E G  F+E SA++   V+E F    A+I++ +   +L    DQ
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELF----AEIVRQMNYSSLPEKQDQ 175          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAP2C_HUMAN (Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2C PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.641e-19
Identity = 59/177 (33.33%), Postives = 92/177 (51.98%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 694
            +K +++G  GVGKS L +QF    F   +D TI  +F  + + +D  P  L+I DTAG E F S+   Y +   G +LVY +  +++F  +    +   R      + ++LVGNK DL   R V   EG   A+E G  F+E SA++   V+E F    A+I++ +   +L    DQ
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELF----AEIVRQMNYSSLPEKQDQ 175          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAP2C_BOVIN (Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.641e-19
Identity = 59/177 (33.33%), Postives = 92/177 (51.98%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 694
            +K +++G  GVGKS L +QF    F   +D TI  +F  + + +D  P  L+I DTAG E F S+   Y +   G +LVY +  +++F  +    +   R      + ++LVGNK DL   R V   EG   A+E G  F+E SA++   V+E F    A+I++ +   +L    DQ
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELF----AEIVRQMNYSSLPEKQDQ 175          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RALA_DROME (Ras-related protein Ral-a OS=Drosophila melanogaster GN=Rala PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.641e-19
Identity = 57/163 (34.97%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  164 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 649
            L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F     + E   R   + ++  +LVGNKCDL  +R V   E +  A++  + ++E SA+T +NV++ F     +I
Sbjct:   11 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPYVETSAKTRENVDKVFFDLMREI 172          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RASK_CYPCA (GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.449e-19
Identity = 56/162 (34.57%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  167 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 649
            +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDL   R+V  ++ +  A+  G+ F+E SA+T Q V++AF     +I
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRSVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 163          
The following BLAST results are available for this feature:
BLAST of DY258646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS1_DROAN2.022e-1933.95Ras-like protein 1 OS=Drosophila ananassae GN=Ras8... [more]
RAC2_LOTJA2.022e-1933.33Rac-like GTP-binding protein RAC2 OS=Lotus japonic... [more]
RASK_MELGA2.641e-1933.14GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV... [more]
RAS2_RHIRA2.641e-1934.52Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2... [more]
RAS1_DROVI2.641e-1933.95Ras-like protein 1 OS=Drosophila virilis GN=Ras85D... [more]
RAP2C_MOUSE2.641e-1933.33Ras-related protein Rap-2c OS=Mus musculus GN=Rap2... [more]
RAP2C_HUMAN2.641e-1933.33Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2... [more]
RAP2C_BOVIN2.641e-1933.33Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C ... [more]
RALA_DROME2.641e-1934.97Ras-related protein Ral-a OS=Drosophila melanogast... [more]
RASK_CYPCA3.449e-1934.57GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258646 ID=DY258646; Name=DY258646; organism=Citrus clementina; type=EST; length=916bp
CGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTCTTCGTCTT
TTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGT
TGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAACAACAACAT
GTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACACTGGAGTAG
GGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTCAGCCCGTT
CATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTCACCATCGA
TGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCAAGAATCTT
TCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGGCACTTCTG
GTTTATGATATTACAAGGAGAGAGACATTTAATCATCTATCAAGCTGGCT
GGAGGATGCGCGGCAGCATGCTAATCCCAACATGTCAATCATGCTCGTTG
GTAACAAGTGTGATCTTGCTCATCGGAGGGCTGTTAGCAAGGAGGAAGGC
GAACAGTTTGCAAAGGAGAATGGGCTTCTGTTTCTGGAAGCATCTGCAAG
AACAGCTCAGAATGTTGAGGAGGCTTTTATAAAGACTGCTGCAAAGATCC
TTCAAAATATTCAGGAAGGAGCACTTGATGCAGTAAATGATCAGTCTGGA
ATTAAGGTTGGGTACGGACGCGGCCAAGGACCATCAGGTGCAAGAGATGG
AACCGTTTCACAGAGAGGTGGATGTTGCAGTTAAATTCATACGAATGTGG
ATTCTGTATTTCATCCCTTTCAGCCATTTATATAGGCCTTACCCCTAACT
TGGATATATCAGTCCAGTATTGTCACGCAAAAACCTGTGAGGGATATGAA
TGTAAAGATCTTATCT
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