DY258646

Overview
NameDY258646
Unique NameDY258646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 1.215e-48
Identity = 101/209 (48.33%), Postives = 138/209 (66.03%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R V  DG+ IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N++ +LVGNKCDLA  R VS E G+  A E G+ FLE SA+ A NVE+AF+  A +I   +        +  + +++   RGQ         V+Q+  CCS
Sbjct:    5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQM---RGQ--------PVAQQSSCCS 202          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB4_DICDI (Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.073e-48
Identity = 93/188 (49.47%), Postives = 130/188 (69.15%), Query Frame = 2
Query:  161 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRG 724
            YL K+IIIG   VGKSCLL +F D +F+     TIGV+F +R+V I G+ +KLQIWDTAGQE FRS+  SYYRG+AG  LVYD+T RE++NH+++WL D +  A+P+++I+LVGNK DL  +R V+  E  + A+ENGLLF+E SA T + VEE F+K    I+  I  G ++   +  G+++    G
Sbjct:    6 YLVKFIIIGSQSVGKSCLLFRFIDNKFKSQSTHTIGVDFSSRVVDIQGKNVKLQIWDTAGQERFRSVVISYYRGSAGVALVYDVTNRESYNHITNWLSDVKSLASPDVTIILVGNKADLTEQREVTFLEASRIAQENGLLFMETSALTGEGVEEMFLKCTRTIMTKIDSGEVNL--EHLGVQISSDSG 191          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.707e-48
Identity = 91/196 (46.43%), Postives = 136/196 (69.39%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSG--IKVGYGRGQGPS 736
            YDYLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKCD+  +R VSKE GE+ A + G+ FLEASA+++ NVEEAF   A  I+  +     D+ +  +G  +K+   R +  S
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITENRSKKTS 200          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 3.536e-48
Identity = 96/208 (46.15%), Postives = 139/208 (66.83%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 778
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T + +FN++  WL++  ++A+ N++ +LVGNKCDL  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I + +  GA     ++S +K+     Q     + G     GGCC
Sbjct:    8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI-----QSTPVKQSG-----GGCC 205          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.536e-48
Identity = 98/209 (46.89%), Postives = 137/209 (65.55%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++GR +K QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF ++S WL++ R HA+ N+ IML+GNK DL H RAV+ E+ + +A++ GL F+E SA  A NVE+AF    +++ + I + ++   +DQ+        GQ    A     + +  CCS
Sbjct:    9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSIS--SDQTTANANIKEGQTIDVAATSESNAKKPCCS 215          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.029e-47
Identity = 90/196 (45.92%), Postives = 135/196 (68.88%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSG--IKVGYGRGQGPS 736
            YDYLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKCD+  +R VSKE GE+ A + G+ FLE SA+++ NVEEAF   A  I+  +     D+ +  +G  +K+   R +  S
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITESRSKKTS 200          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.029e-47
Identity = 90/196 (45.92%), Postives = 135/196 (68.88%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSG--IKVGYGRGQGPS 736
            YDYLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKCD+  +R VSKE GE+ A + G+ FLE SA+++ NVEEAF   A  I+  +     D+ +  +G  +K+   R +  S
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITESRSKKTS 200          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.755e-47
Identity = 90/196 (45.92%), Postives = 135/196 (68.88%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSG--IKVGYGRGQGPS 736
            YDYLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKCD+  +R VSKE GE+ A + G+ FLE SA+++ NVEEAF   A  I+  +     D+ +  +G  +K+   R +  S
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENRSKKTS 200          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.755e-47
Identity = 90/196 (45.92%), Postives = 135/196 (68.88%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSG--IKVGYGRGQGPS 736
            YDYLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKCD+  +R VSKE GE+ A + G+ FLE SA+++ NVEEAF   A  I+  +     D+ +  +G  +K+   R +  S
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENRSKKTS 200          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.755e-47
Identity = 89/180 (49.44%), Postives = 128/180 (71.11%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 694
            YDYL K ++IGD+GVGKSCLLL+F++  F P    TIG++F  R + ++G+ IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T  ++F ++ +W+ +  QHA  +++ ML+GNKCD+A ++ V    G+  A E G+ FLE SA+ + NVEEAFI  A    ++I++  +D  N+Q
Sbjct:   12 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLA----KDIKKRMIDTPNEQ 187          
The following BLAST results are available for this feature:
BLAST of DY258646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RIC1_ORYSJ1.215e-4848.33Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB4_DICDI2.073e-4849.47Ras-related protein Rab-4 OS=Dictyostelium discoid... [more]
RAB8B_BOVIN2.707e-4846.43Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB1A_PIG3.536e-4846.15Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAA2A_ARATH3.536e-4846.89Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RAB8B_RAT1.029e-4745.92Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_MOUSE1.029e-4745.92Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_PONAB1.755e-4745.92Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_HUMAN1.755e-4745.92Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8A_DICDI1.755e-4749.44Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258646 ID=DY258646; Name=DY258646; organism=Citrus clementina; type=EST; length=916bp
CGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTCTTCGTCTT
TTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGT
TGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAACAACAACAT
GTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACACTGGAGTAG
GGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTCAGCCCGTT
CATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTCACCATCGA
TGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCAAGAATCTT
TCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGGCACTTCTG
GTTTATGATATTACAAGGAGAGAGACATTTAATCATCTATCAAGCTGGCT
GGAGGATGCGCGGCAGCATGCTAATCCCAACATGTCAATCATGCTCGTTG
GTAACAAGTGTGATCTTGCTCATCGGAGGGCTGTTAGCAAGGAGGAAGGC
GAACAGTTTGCAAAGGAGAATGGGCTTCTGTTTCTGGAAGCATCTGCAAG
AACAGCTCAGAATGTTGAGGAGGCTTTTATAAAGACTGCTGCAAAGATCC
TTCAAAATATTCAGGAAGGAGCACTTGATGCAGTAAATGATCAGTCTGGA
ATTAAGGTTGGGTACGGACGCGGCCAAGGACCATCAGGTGCAAGAGATGG
AACCGTTTCACAGAGAGGTGGATGTTGCAGTTAAATTCATACGAATGTGG
ATTCTGTATTTCATCCCTTTCAGCCATTTATATAGGCCTTACCCCTAACT
TGGATATATCAGTCCAGTATTGTCACGCAAAAACCTGTGAGGGATATGAA
TGTAAAGATCTTATCT
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