DY258646

Overview
NameDY258646
Unique NameDY258646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 189.889 bits (481), Expect = 1.755e-47
Identity = 100/209 (47.85%), Postives = 134/209 (64.11%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKS +L +FT   F      TIGVEF  R   ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R HA+ N+ IM+ GNK DL H R+V++E+G+  A++ GL FLE SA  A NVE+AF     +I   I + AL A    +      G+G       D +   +  CCS
Sbjct:    9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGT-TINVDDTSGGAKRACCS 216          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.292e-47
Identity = 91/189 (48.15%), Postives = 131/189 (69.31%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGR 721
            YDYL K ++IGD+GVGKSCLLL+F++  F P    TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G LL+YD+T +++F+++ +W  +  QHA+ N+  +L+GNKCD   +R VS E+G+  A E G+ FLEASA+T  NV+EAF   A +I +   +   +  N  + + +G  R
Sbjct:    6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVDLGNDR 194          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.292e-47
Identity = 97/209 (46.41%), Postives = 132/209 (63.16%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKS LL +F+   F      TIGVEF  R + +D + +K QIWDTAGQE +R+IT +YYRGA GAL+VYDITR  TF ++  WL++ R H + N+ IMLVGNK DL H RAVS E+ + FA+     F+E SA  + NVE AF +   +I + +   AL+  +D + +  G     G     D +  ++ GCCS
Sbjct:   11 YDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAALPKGQTINVGKD---DVSAVKKVGCCS 216          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 3.910e-47
Identity = 99/209 (47.37%), Postives = 136/209 (65.07%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKSCLLL+F+D  +   +  TIGV+F  R V  DG+ IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  E+FN++  WL +  ++A+ N++ +LVGNK DL   RA+  E  + FA E G+ F+E SA+ A NVE+AF+  +A I + +   A     + +       RGQ         V+Q+ GCCS
Sbjct:    5 YDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERM---ASQPAGNNARPPTVQIRGQ--------PVAQKNGCCS 202          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.106e-47
Identity = 97/194 (50.00%), Postives = 138/194 (71.13%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPS 736
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A  N++ +LVGNK DL  +R VS +  ++FA+  G+ FLE SA+ A NVE+AF+  AA+I + +   A   V  ++G+K+  G+ Q PS
Sbjct:    5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRM---ANAPVAPKAGVKLTPGQ-QVPS 194          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.106e-47
Identity = 86/171 (50.29%), Postives = 125/171 (73.10%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 667
            YDYLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R V +DG+ IKLQIWDTAGQE FR+IT +YYRGA G + VYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKCD+  +R VSKE GE+ A + G+ FLE SA+++ NVEEAFI  A  I+  + +
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNK 175          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.138e-46
Identity = 98/210 (46.67%), Postives = 134/210 (63.81%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPS-GARDGTVSQRGGCCS 781
            YDYLFK ++IGD+GVGKS +L +FT   F      TIGVEF  R + ++G+ +K QIWDTAGQE +R+IT +YYRGA GALL YDIT+R+TF+++  WL + R H + N+ I+L GNK DL H RAVS+++ +   K+ GL FLE SA  A NV++AF      I   I + AL A    +   +    GQG +    D + + + GCCS
Sbjct:    9 YDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTAL---PGQGTTINVSDNSANVKRGCCS 215          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.138e-46
Identity = 94/209 (44.98%), Postives = 140/209 (66.99%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND-QSGIKVGYGRGQGPSGARDGTVSQRGGCC 778
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNK DL  ++ V     +++A + G+ FLE SA+ A NVE+AF+  AA+I   +  G + A +D +  +K+          +     + +GGCC
Sbjct:    8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRM--GPITAASDSKPSVKI---------NSSTPVSANKGGCC 205          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.940e-46
Identity = 93/196 (47.45%), Postives = 128/196 (65.31%), Query Frame = 2
Query:  158 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGAR 745
            DY+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + ID + +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R+TF+H+  WLE+ R HA+ N+ I+L+GNKCDL ++R V  E+ ++FA++ GL FLE SA  A NVE AF     +I   + + +L A   Q     G G     SG +
Sbjct:   15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADESQ-----GNGNSASLSGQK 205          
BLAST of DY258646 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.940e-46
Identity = 88/179 (49.16%), Postives = 126/179 (70.39%), Query Frame = 2
Query:  155 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 691
            YD+L K ++IGD+GVGKSCLLL+F+D  F P    TIG++F  R + ++G+ IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T  ++F  + +W+ +  QHA+ +++ ML+GNKCD+  ++ V    G+  A E G+ FLE SA+ + NVEEAFI  A    ++I++  +D  ND
Sbjct:   12 YDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLA----KDIKKRMIDTPND 186          
The following BLAST results are available for this feature:
BLAST of DY258646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAA2C_ARATH1.755e-4747.85Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
YPT2_SCHPO2.292e-4748.15GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RB11B_TOBAC2.292e-4746.41Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RBD2A_ARATH3.910e-4747.37Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
YPT1_PHYIN5.106e-4750.00Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB8_DISOM5.106e-4750.29Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RB11A_TOBAC1.138e-4646.67Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAB1A_LYMST1.138e-4644.98Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RB11A_LOTJA1.940e-4647.45Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RAB8B_DICDI1.940e-4649.16Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258646 ID=DY258646; Name=DY258646; organism=Citrus clementina; type=EST; length=916bp
CGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTCTTCGTCTT
TTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGT
TGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAACAACAACAT
GTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACACTGGAGTAG
GGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTCAGCCCGTT
CATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTCACCATCGA
TGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCAAGAATCTT
TCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGGCACTTCTG
GTTTATGATATTACAAGGAGAGAGACATTTAATCATCTATCAAGCTGGCT
GGAGGATGCGCGGCAGCATGCTAATCCCAACATGTCAATCATGCTCGTTG
GTAACAAGTGTGATCTTGCTCATCGGAGGGCTGTTAGCAAGGAGGAAGGC
GAACAGTTTGCAAAGGAGAATGGGCTTCTGTTTCTGGAAGCATCTGCAAG
AACAGCTCAGAATGTTGAGGAGGCTTTTATAAAGACTGCTGCAAAGATCC
TTCAAAATATTCAGGAAGGAGCACTTGATGCAGTAAATGATCAGTCTGGA
ATTAAGGTTGGGTACGGACGCGGCCAAGGACCATCAGGTGCAAGAGATGG
AACCGTTTCACAGAGAGGTGGATGTTGCAGTTAAATTCATACGAATGTGG
ATTCTGTATTTCATCCCTTTCAGCCATTTATATAGGCCTTACCCCTAACT
TGGATATATCAGTCCAGTATTGTCACGCAAAAACCTGTGAGGGATATGAA
TGTAAAGATCTTATCT
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