DY258647

Overview
NameDY258647
Unique NameDY258647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1267
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_THICR (Triosephosphate isomerase OS=Thiomicrospira crunogena (strain XCL-2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 4.850e-44
Identity = 106/250 (42.40%), Postives = 144/250 (57.60%), Query Frame = 3
Query:   66 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRK-GGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 803
            R+ FV GNWK +G    +K +V+ LN                          L+  +  +  QN  +    GA+TGE SA ML ++   +VILGHSERRA+  E++  +  KV  AL  GL  I CVGETLE+RESG   +V+++Q  A+  +  I  + +VV+AYEPVWAIGTGK A+  QAQ+VHA +R  L   ++  VA    I YGGSV   N  EL +QPD+DG L+GGASL   +FI I ++A
Sbjct:    2 RQLFVAGNWKMHGDKASIKTLVTGLNAKADSVGDVLVAVCPPAIYLDYTKNCLMAGEIALGGQNMAIEPVQGAYTGETSASMLKDVGCQYVILGHSERRAIYGETDQDIAAKVKTALDSGLTPILCVGETLEERESGQLESVISQQLDAVISEVGIDQFADVVIAYEPVWAIGTGKTASAQQAQDVHAFIRGQLA-KLNPSVAEKVIIQYGGSVKPNNASELFSQPDIDGGLIGGASLNADDFIAICQAA 250          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_PSYIN (Triosephosphate isomerase OS=Psychromonas ingrahamii (strain 37) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 4.850e-44
Identity = 103/245 (42.04%), Postives = 137/245 (55.92%), Query Frame = 3
Query:   78 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE--KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGAS-LKPEFIDIIKSA 803
            V GNWK NGT E V  ++  +  A                        +  +   + AQ+      GAFTGE S  M+      + ++GHSERR   NE++  V  K     + GL  + C+GETLE+RE+  T  VV  Q KA+ +   I   +N V+AYEPVWAIGTGKVA+  QAQ+VHA +R WL +  S  VAA  +I+YGGSV  ++ KEL AQPD+DG LVGGA+ L  EF+ II+ A
Sbjct:    6 VMGNWKLNGTKESVSALIKGIEAAADAAKNVEVAVCPPTIFIEQVANLVANNSIELGAQDVSTNISGAFTGETSPVMVKEFGAKYSLVGHSERRQYHNETDAVVAAKFVAIQANGLVPVLCIGETLEERETDKTFNVVETQLKAVIDVSGIDALENAVIAYEPVWAIGTGKVASSEQAQDVHAHIRTWLAEQ-SKVVAAKVQILYGGSVKASSAKELFAQPDIDGGLVGGAALLVEEFVGIIEGA 249          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 4.850e-44
Identity = 106/250 (42.40%), Postives = 145/250 (58.00%), Query Frame = 3
Query:   66 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKG-GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 803
            R+  V GNWK NGT   V +++ +    +                       +      V AQ+C ++ G GA TGEVSA+ LV+L   WV++GHSERR +L E+++ V  K A A + GLK + C+GETLE+RE+G T+ VVA Q   + +   +  + + V+AYEPVWAIG+G  ATP QAQEVHA +R  L  +    +A   R++YGGSV   N  EL A  D+DG LVGGASLK  EF  I ++A
Sbjct:    2 RRPMVAGNWKMNGTRASVAELIESFRR-QALPAAVEIAVFPSFVHVSQVLDVVDGVQVSVGAQDCALQSGFGALTGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIRDQLARS-DRRIAEGVRLLYGGSVKADNAAELFAMADIDGGLVGGASLKADEFGAICRAA 249          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_YERE8 (Triosephosphate isomerase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 6.334e-44
Identity = 104/248 (41.94%), Postives = 142/248 (57.26%), Query Frame = 3
Query:   78 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 803
            V GNWK NG++  V ++++ L +                         L  S   + AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES++F+  K       GL  + C+GET  + E+G T AV A+Q  A+   +    ++  V+AYEP+WAIGTGK ATPAQAQ VH    K+++D+++   A +AA   I YGGSVN  N  EL  QPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSTHMVNELIANLRKELSTVEGCGVAIAPPAIYLNQAKHELSGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDEFIAKKFGVLKEVGLTPVLCIGETEAENEAGQTEAVCAKQLDAVLNTLGAKAFEGAVIAYEPIWAIGTGKSATPAQAQAVH----KFIRDHIAKQDAAIAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAA 249          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_THIDA (Triosephosphate isomerase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 8.272e-44
Identity = 115/249 (46.18%), Postives = 142/249 (57.03%), Query Frame = 3
Query:   66 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGAS-LKPEFIDIIKSA 803
            RK  V GNWK +G+  E   +++ L  A                       +L  S     AQN      GAFTGEVSA ML++    +VI+GHSERR+L  ES+  V  K   A + GL  I CVGE+L +RESG T  VVA Q  A+  A  I++    V+AYEPVWAIGTGK A+P QAQ VHA +R  L D + A VAA   I YGGSV  AN  EL AQPD+DG L+GGAS L  EF+ I ++A
Sbjct:    2 RKKLVAGNWKMHGSLAENAALLAALKPA---LQGIEAAVCVPFPYLAQVQTALAGSSLAWGAQNVSEHGKGAFTGEVSASMLLDFGCKYVIVGHSERRSLYGESDALVAAKYMAAQAAGLTPILCVGESLAERESGVTEQVVARQLDAVVAAAGIASLARAVVAYEPVWAIGTGKTASPEQAQAVHAFIRGKLAD-LDAAVAAGLIIQYGGSVKAANAAELMAQPDIDGGLIGGASLLADEFVAICRAA 246          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_SALTY (Triosephosphate isomerase OS=Salmonella typhimurium GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.080e-43
Identity = 103/248 (41.53%), Postives = 144/248 (58.06%), Query Frame = 3
Query:   78 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 803
            V GNWK NG+   V ++V+ L +                       ++   S   + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    +GL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA 249          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_SALSV (Triosephosphate isomerase OS=Salmonella schwarzengrund (strain CVM19633) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.080e-43
Identity = 103/248 (41.53%), Postives = 144/248 (58.06%), Query Frame = 3
Query:   78 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 803
            V GNWK NG+   V ++V+ L +                       ++   S   + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    +GL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA 249          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_SALPK (Triosephosphate isomerase OS=Salmonella paratyphi A (strain AKU_12601) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.080e-43
Identity = 103/248 (41.53%), Postives = 144/248 (58.06%), Query Frame = 3
Query:   78 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 803
            V GNWK NG+   V ++V+ L +                       ++   S   + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    +GL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA 249          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_SALPB (Triosephosphate isomerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.080e-43
Identity = 103/248 (41.53%), Postives = 144/248 (58.06%), Query Frame = 3
Query:   78 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 803
            V GNWK NG+   V ++V+ L +                       ++   S   + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    +GL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA 249          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_SALPA (Triosephosphate isomerase OS=Salmonella paratyphi A GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.080e-43
Identity = 103/248 (41.53%), Postives = 144/248 (58.06%), Query Frame = 3
Query:   78 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 803
            V GNWK NG+   V ++V+ L +                       ++   S   + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    +GL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA 249          
The following BLAST results are available for this feature:
BLAST of DY258647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_THICR4.850e-4442.40Triosephosphate isomerase OS=Thiomicrospira crunog... [more]
TPIS_PSYIN4.850e-4442.04Triosephosphate isomerase OS=Psychromonas ingraham... [more]
TPIS_PSEU54.850e-4442.40Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_YERE86.334e-4441.94Triosephosphate isomerase OS=Yersinia enterocoliti... [more]
TPIS_THIDA8.272e-4446.18Triosephosphate isomerase OS=Thiobacillus denitrif... [more]
TPIS_SALTY1.080e-4341.53Triosephosphate isomerase OS=Salmonella typhimuriu... [more]
TPIS_SALSV1.080e-4341.53Triosephosphate isomerase OS=Salmonella schwarzeng... [more]
TPIS_SALPK1.080e-4341.53Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALPB1.080e-4341.53Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALPA1.080e-4341.53Triosephosphate isomerase OS=Salmonella paratyphi ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258647 ID=DY258647; Name=DY258647; organism=Citrus clementina; type=EST; length=1267bp
GATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATTCA
ATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAA
TGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATGAAGCTG
AAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTG
TTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCATGTTGCCGC
TCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTG
CTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCT
GAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGT
TGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGA
CTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAA
ACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGC
TTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTC
AGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTC
AGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAA
TGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTAGATGGATTTT
TGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCT
GCCACAGTGAAAAAGAATTGAAGTAAAAACAACCTACTCGGCTTGCTGAT
GCCTGCAGTTTTCTCTTGTATGCTTTCTGGAACTAGCGTTTGAATTTTTG
GGGTCTGTTAGTTGTACCACGCCCTTTCGAGAAAAAAAGTTAAATTTTCA
AAAATTGTAAAAAACCCTTTCCAATTCCAGGGGAATTTAAAACTAACCAT
TGGGGAATTAAAAAAAGTTTGTTTTTTTCCTTCTTGCAAAAAAAAAAAAA
AAAAAAAAACCAAACTTTTTTTGTAAAAAGTTGGGATAAAAAAAAAAACA
TTGTTTATATAATTTGTGTTCCACCAAAAAGGCCCCACTAACAATAAAAA
AAAAAAATATTTTTTTTGCCCCCTCCCCCGGAGAAATCCCCCCCAATAAA
AGAGAAAGACTTAATAAAATAATGGTGGGCCTAAAATAATGTTGTTTTTT
TCTCGCCGGCGCCCCCC
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