DY258647

Overview
NameDY258647
Unique NameDY258647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1267
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGA (Triosephosphate isomerase OS=Mycoplasma gallisepticum GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.974e-37
Identity = 95/247 (38.46%), Postives = 139/247 (56.28%), Query Frame = 3
Query:   69 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKS 800
            K ++ GNWK   T++EVK+  S LN+ +                       L R++  V AQ+       A TG VS E L ++ + +VI+GHSERR L +ES++ +  KV   L   ++ I C+GETLE+ E+  T AV+ +Q +   + I +    ++++AYEPVWAIGTGK A+   AQ+  A +R  L    S  +A    I+YGGSV   N  EL AQ D++G LVGGASL P +FI +I++
Sbjct:    5 KRYIFGNWKTYKTTQEVKEFFSVLNQTKLTKNPDVVFGVAPVFVHLGLANQLERNECLVLAQDANYVMNKANTGTVSYEQLKDIGVNYVIIGHSERRKLFHESDELINQKVKTLLENKMRPILCIGETLEEYEANKTKAVLKDQLEKDLKGIDSSLLKDLIIAYEPVWAIGTGKTASSQTAQDAIAYIRTVLGLLSSKTIANELPILYGGSVTPDNVSELLAQKDINGALVGGASLDPHKFIQLIEA 251          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_ACIBY (Triosephosphate isomerase OS=Acinetobacter baumannii (strain AYE) GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.974e-37
Identity = 101/253 (39.92%), Postives = 141/253 (55.73%), Query Frame = 3
Query:   75 FVGGNWKCNGTS-------EEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDN-VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 800
            +V GNWK N          EE K+++     A+                     +   R+   VA     V   GA+TGEVSAE+L +  I +V++GHSERR +  ++ + +  K+  AL+ G+ VI CVGE+LEQRE G    VV +Q   IA  ++   W N VV+AYEP+WAIGTGK A+P  AQ +HA++R+ L     A   ++  I+YGGSV   N  ELAA PD++G LVGGASLK   F  I+++
Sbjct:    9 WVVGNWKMNPMRANANQLIEEFKQLLQQNQIADENCHVGVAPVSIALTTVQAQLQDAARTVHTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLTPA--GSNIAILYGGSVKAENAVELAACPDINGALVGGASLKAASFYQIVQA 259          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_ACIB5 (Triosephosphate isomerase OS=Acinetobacter baumannii (strain AB0057) GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.974e-37
Identity = 101/253 (39.92%), Postives = 141/253 (55.73%), Query Frame = 3
Query:   75 FVGGNWKCNGTS-------EEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDN-VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 800
            +V GNWK N          EE K+++     A+                     +   R+   VA     V   GA+TGEVSAE+L +  I +V++GHSERR +  ++ + +  K+  AL+ G+ VI CVGE+LEQRE G    VV +Q   IA  ++   W N VV+AYEP+WAIGTGK A+P  AQ +HA++R+ L     A   ++  I+YGGSV   N  ELAA PD++G LVGGASLK   F  I+++
Sbjct:    9 WVVGNWKMNPMRANANQLIEEFKQLLQQNQIADENCHVGVAPVSIALTTVQAQLQDAARTVHTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLTPA--GSNIAILYGGSVKAENAVELAACPDINGALVGGASLKAASFYQIVQA 259          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_VIBPA (Triosephosphate isomerase OS=Vibrio parahaemolyticus GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.578e-37
Identity = 97/252 (38.49%), Postives = 136/252 (53.97%), Query Frame = 3
Query:   66 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFH---VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 803
            R+  V GNWK NG+   V ++++ LN AE                     + L+    +   + AQN  +   GAFTG++S EML +     +I+GHSERR   NES++F+  K  +    GL  + C+GE+  Q E+G T AV A Q  A+ +   +   +  ++AYEP+WAIGTGK AT   AQ +HA +R  +     A VAA   I YGGSV   N +   +QPD+DG LVGGASL  + F  I K+A
Sbjct:    2 RRPVVMGNWKLNGSKAMVTELLTGLN-AELEGVEGVDVAVAPPALYIDLAERLIAEGGNKIILGAQNTDLNNSGAFTGDMSPEMLKDFGATHIIIGHSERREYHNESDEFIAKKFNFLKENGLTPVFCIGESEAQNEAGETEAVCARQINAVIDTYGVEALNGAIIAYEPIWAIGTGKAATAEDAQRIHASIRALIAAKDEA-VAAQVIIQYGGSVKPENAEAYFSQPDIDGALVGGASLDAKSFAAIAKAA 251          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_THET2 (Triosephosphate isomerase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.578e-37
Identity = 96/249 (38.55%), Postives = 130/249 (52.21%), Query Frame = 3
Query:   66 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 803
            R+  V GNWK + T  E +   + L                         + L  +     AQ+    K GA+TGEVSA ML +L   + I+GHSERR    E++  V +K    L  G+  I CVGE LE RE G  V     Q +   E +     + +V+AYEPVWAIGTGK ATP  A+ +H E+RK L +      A+  RI+YGGSVN  N  +L + P+VDG LVGGASL+ E F+ +++ A
Sbjct:    2 RRVLVAGNWKMHKTPSEARVWFAELKRL-LPPLQSEAAVLPAFPILPVAKEVLAETQVGYGAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATPEDAEAMHQEIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLELESFLALLRIA 249          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPA (Triosephosphate isomerase OS=Mycobacterium paratuberculosis GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.578e-37
Identity = 100/246 (40.65%), Postives = 130/246 (52.85%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEEVKKIVSTLNEA-EXXXXXXXXXXXXXXXXXXXXXKSLLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            M+RK  + GNWK N    E   +V  +  A                       ++L+  D       AQ+      GA+TG++S   L  L   +V++GHSERR   NE +  V  K A AL   L  I C+GE LE RE+G+ V    EQ +     +S      VV+AYEPVWAIGTG+VA+ + AQEV A +RK L    SA++A S R++YGGSVN  N  EL AQ D+DG LVGGASL  E
Sbjct:    1 MSRKPLIAGNWKMNLNHFEAIALVQKIAFALPDKYYDKVDVTVLPPFTDLRSVQTLVDGDKLRLSYGAQDLSQHDSGAYTGDISGAFLAKLGCTFVVVGHSERRTYHNEDDALVAAKAATALKHELTPIICIGEHLEVREAGNHVIHCEEQLRGSLAGLSAEQIGKVVIAYEPVWAIGTGRVASASDAQEVCAAIRKELASLASAQIADSVRVLYGGSVNAKNVGELIAQDDIDGGLVGGASLDGE 246          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCA1 (Triosephosphate isomerase OS=Mycobacterium avium (strain 104) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.578e-37
Identity = 100/246 (40.65%), Postives = 130/246 (52.85%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEEVKKIVSTLNEA-EXXXXXXXXXXXXXXXXXXXXXKSLLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            M+RK  + GNWK N    E   +V  +  A                       ++L+  D       AQ+      GA+TG++S   L  L   +V++GHSERR   NE +  V  K A AL   L  I C+GE LE RE+G+ V    EQ +     +S      VV+AYEPVWAIGTG+VA+ + AQEV A +RK L    SA++A S R++YGGSVN  N  EL AQ D+DG LVGGASL  E
Sbjct:    1 MSRKPLIAGNWKMNLNHFEAIALVQKIAFALPDKYYDKVDVTVLPPFTDLRSVQTLVDGDKLRLSYGAQDLSQHDSGAYTGDISGAFLAKLGCTFVVVGHSERRTYHNEDDALVAAKAAAALKHELTPIICIGEHLEVREAGNHVIHCEEQLRGSLAGLSAEQIGKVVIAYEPVWAIGTGRVASASDAQEVCAAIRKELASLASAQIADSVRVLYGGSVNAKNVGELIAQDDIDGGLVGGASLDGE 246          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_BIFLO (Triosephosphate isomerase OS=Bifidobacterium longum GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.578e-37
Identity = 95/242 (39.26%), Postives = 130/242 (53.72%), Query Frame = 3
Query:   78 VGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVA--AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            V GNWK N    E    V+K+V  L +A                        +     HVA  AQ+  V   GAFTG+VSA+M+ +L   +VI+GHSERR    E +  + D+V   L+ G++ I CVGE+ E+R  G  +     Q + +   ++      +++AYEPVWAIGTG VATP  AQ+    +R  LK     +V+ S RI+YGGSV   N  EL +QPDVDGFL+GGA+L  E
Sbjct:    9 VAGNWKMNFDHLEATYFVQKLVWLLRDAHFDFKRCEVALFPSFTSLRSVQVLVEADKLHVAYGAQSVSVTTQGAFTGDVSADMIAHLGCSYVIVGHSERRKYHPEDDANIVDQVRAVLAAGMQPILCVGESFEERRQGIELDFAVGQVRDVTRDLNEEQAAKLIVAYEPVWAIGTGMVATPQSAQDAANAIRNDLKTTFGTKVSDSVRILYGGSVTSKNAAELISQPDVDGFLIGGAALDVE 250          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_BIFLD (Triosephosphate isomerase OS=Bifidobacterium longum (strain DJO10A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.578e-37
Identity = 95/242 (39.26%), Postives = 130/242 (53.72%), Query Frame = 3
Query:   78 VGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVA--AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            V GNWK N    E    V+K+V  L +A                        +     HVA  AQ+  V   GAFTG+VSA+M+ +L   +VI+GHSERR    E +  + D+V   L+ G++ I CVGE+ E+R  G  +     Q + +   ++      +++AYEPVWAIGTG VATP  AQ+    +R  LK     +V+ S RI+YGGSV   N  EL +QPDVDGFL+GGA+L  E
Sbjct:    9 VAGNWKMNFDHLEATYFVQKLVWLLRDAHFDFKRCEVALFPSFTSLRSVQVLVEADKLHVAYGAQSVSVTTQGAFTGDVSADMIAHLGCSYVIVGHSERRKYHPEDDANIVDQVRAVLAAGMQPILCVGESFEERRQGIELDFAVGQVRDVTRDLNEEQAAKLIVAYEPVWAIGTGMVATPQSAQDAANAIRNDLKTTFGTKVSDSVRILYGGSVTSKNAAELISQPDVDGFLIGGAALDVE 250          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_BDEBA (Triosephosphate isomerase OS=Bdellovibrio bacteriovorus GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.578e-37
Identity = 89/195 (45.64%), Postives = 116/195 (59.49%), Query Frame = 3
Query:  216 KSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 800
            +SL  +     AQNC+ +  GAFTGE SA+++ +L   +V++GHSERRA+  E +  V DKVA+    GL  + C+GETL++RES  T  V+  Q      K      VV+AYEPVWAIGTGKVATP Q  E H ++   LK    A    +  I+YGGSV   N   L  QP V+GFLVGGASL+ +    I S
Sbjct:   50 ESLKGTSIKFGAQNCYFQAQGAFTGENSAQVVKDLGGSYVLIGHSERRAIFGEGDALVADKVAFVQGLGLTPMLCIGETLQERESAKTFRVLETQLNLGLAKADKTKPVVVAYEPVWAIGTGKVATPEQVAETHTDVFNILK----ALGFETAPILYGGSVKPDNAAGLIKQPHVNGFLVGGASLEAKSFSEIAS 240          
The following BLAST results are available for this feature:
BLAST of DY258647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYCGA1.974e-3738.46Triosephosphate isomerase OS=Mycoplasma gallisepti... [more]
TPIS_ACIBY1.974e-3739.92Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_ACIB51.974e-3739.92Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_VIBPA2.578e-3738.49Triosephosphate isomerase OS=Vibrio parahaemolytic... [more]
TPIS_THET22.578e-3738.55Triosephosphate isomerase OS=Thermus thermophilus ... [more]
TPIS_MYCPA2.578e-3740.65Triosephosphate isomerase OS=Mycobacterium paratub... [more]
TPIS_MYCA12.578e-3740.65Triosephosphate isomerase OS=Mycobacterium avium (... [more]
TPIS_BIFLO2.578e-3739.26Triosephosphate isomerase OS=Bifidobacterium longu... [more]
TPIS_BIFLD2.578e-3739.26Triosephosphate isomerase OS=Bifidobacterium longu... [more]
TPIS_BDEBA2.578e-3745.64Triosephosphate isomerase OS=Bdellovibrio bacterio... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258647 ID=DY258647; Name=DY258647; organism=Citrus clementina; type=EST; length=1267bp
GATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATTCA
ATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAA
TGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATGAAGCTG
AAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTG
TTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCATGTTGCCGC
TCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTG
CTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCT
GAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGT
TGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGA
CTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAA
ACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGC
TTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTC
AGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTC
AGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAA
TGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTAGATGGATTTT
TGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCT
GCCACAGTGAAAAAGAATTGAAGTAAAAACAACCTACTCGGCTTGCTGAT
GCCTGCAGTTTTCTCTTGTATGCTTTCTGGAACTAGCGTTTGAATTTTTG
GGGTCTGTTAGTTGTACCACGCCCTTTCGAGAAAAAAAGTTAAATTTTCA
AAAATTGTAAAAAACCCTTTCCAATTCCAGGGGAATTTAAAACTAACCAT
TGGGGAATTAAAAAAAGTTTGTTTTTTTCCTTCTTGCAAAAAAAAAAAAA
AAAAAAAAACCAAACTTTTTTTGTAAAAAGTTGGGATAAAAAAAAAAACA
TTGTTTATATAATTTGTGTTCCACCAAAAAGGCCCCACTAACAATAAAAA
AAAAAAATATTTTTTTTGCCCCCTCCCCCGGAGAAATCCCCCCCAATAAA
AGAGAAAGACTTAATAAAATAATGGTGGGCCTAAAATAATGTTGTTTTTT
TCTCGCCGGCGCCCCCC
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