DY258647

Overview
NameDY258647
Unique NameDY258647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1267
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_PARUW (Triosephosphate isomerase OS=Protochlamydia amoebophila (strain UWE25) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.397e-37
Identity = 85/187 (45.45%), Postives = 115/187 (61.50%), Query Frame = 3
Query:  243 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 794
            + AQN      GAFTGE++ +M+      +V+LGHSERR L  E N F+  KV  AL  GL  + CVGET E+R+SG T  ++  Q +     ++  D   +++AYEPVWAIG G+ A P  AQE+H   RK +K+  S E+A    I YGGSVN +N   L  QPD+DG L+GGASL  E F++I+
Sbjct:   64 IGAQNMNDASEGAFTGEIAGKMVKEAGASFVLLGHSERRHLYKEDNAFINRKVKKALEIGLTPVLCVGETFEERKSGETQQIIRTQIQECLAGLTAEDLKTLIIAYEPVWAIGNGQNAKPEGAQEIHQFCRKIIKEIFSEELAEQIVIQYGGSVNPSNAISLLKQPDIDGLLIGGASLSLETFVEIV 250          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_XANP2 (Triosephosphate isomerase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 5.742e-37
Identity = 97/248 (39.11%), Postives = 127/248 (51.21%), Query Frame = 3
Query:   63 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXX-KSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 800
            +R+  + GNWK NG    + +I +     +                      + L  S   +  QNC     GA TG +SAEML +  +  VI+GHSERR  L+ES+  V  KV  A   GL  I CVGET E+R++G  V VV  Q      +     N+V+AYEPVWAIGTG+  TP     +H  +R  L+    AE A   RI+YGGSV   N   L A  DVDG LVGGASLK  +F+ I ++
Sbjct:    4 SRRVLIAGNWKMNGLKSSLAEIEALAAGYDGDLKAKLDLLVCPPATLLISAAERLAGSGVQLGGQNCHPAPAGAHTGGISAEMLKDAGVTSVIVGHSERRTNLSESDAVVMAKVKAAWCFGLLPIVCVGETAEERDAGEAVGVVTRQVHQSLPEGCTASNLVIAYEPVWAIGTGRTPTPEDVANIHGTIRSVLRSQFGAE-ADGIRILYGGSVKPDNAATLMAVADVDGALVGGASLKAADFLAIARA 250          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCA9 (Triosephosphate isomerase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 5.742e-37
Identity = 99/246 (40.24%), Postives = 126/246 (51.22%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            M+RK  + GNWK N    E    V+KI  +L +                           +      AQ+  V   GA+TGEVS   L  L + +V++GHSERR    E +  V  K A AL  GL  I C+GE L+ RE+G  V       +     +S      VV+AYEPVWAIGTG+VA+ A AQEV A +R  L    +A+VA S R++YGGS N  N  E+ AQ DVDG LVGGASL  E
Sbjct:    1 MSRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDIRSVQTLVDGDKLRLTYGAQDLSVYDSGAYTGEVSGAFLAKLGVTYVVVGHSERRQYHGEDDALVAAKAAAALKHGLTPIVCIGEALDIREAGDHVQYNVNSLRGSLAGLSAEQVGKVVIAYEPVWAIGTGRVASAADAQEVCAAIRAELAQIANADVAGSVRVLYGGSANAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_LACSS (Triosephosphate isomerase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 5.742e-37
Identity = 88/246 (35.77%), Postives = 132/246 (53.66%), Query Frame = 3
Query:   66 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 794
            RK  + GNWK N    +  + V+ +                         ++   +D  VAA+NC+  + GAFTGE S + L  + + +VI+GHSERR   +E+++ +  K        +  I C GE+LE RE+G     V+ Q     + +S     ++V+AYEP+WAIGTGK A+  QAQE+ A +R+ +       VA   RI YGGSV  AN KE+  + D+DG LVGGAS++P  F+D++
Sbjct:    2 RKPIIAGNWKMNMNPTQTTEFVNAIKANLPKFDQTESVIGAPAVDLPALLEAAKGTDLKVAAENCYFEEAGAFTGETSPKTLNEMGVDYVIIGHSERRDYFHETDEDINKKAHAIFKNNMTPIFCCGESLETREAGKAEEWVSNQVTEGLKGLSADQVSSMVIAYEPIWAIGTGKTASADQAQEICAVVRQTVAKLYDQTVADKVRIQYGGSVKPANVKEIMGKEDIDGGLVGGASMEPASFLDLV 247          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBL (Triosephosphate isomerase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 5.742e-37
Identity = 93/240 (38.75%), Postives = 126/240 (52.50%), Query Frame = 3
Query:   66 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNW--DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            R   + GNWK N T +E  ++V  L                         + +  S+  V AQN    + GA+TGE++ +ML  L + +VI+GHSERR   NE+++ V  KV  A    L  I C GE+LE+RE   T  V+  Q K   +++S    + +V+AYEP+WAIGTGK AT  QA E    +R  +KD     VA   RI YGGSV     K   A+ ++DG LVGGASLK E
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKPL-VKDAKCDVVVCPTYVCLPAVLEEVKGSNIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGENVADKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_STRGC (Triosephosphate isomerase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.499e-37
Identity = 93/255 (36.47%), Postives = 130/255 (50.98%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI-----AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 797
            M+RK F+ GNWK N   EE K  V  +                          +   S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE++++    V+AYEP+WAIGTGK A+   AQ++   +R  +  +   EVA   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPAVDLTAVLAAAKGSNLKVAAQNCYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAS---TVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_STRA5 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype V GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.499e-37
Identity = 92/252 (36.51%), Postives = 127/252 (50.40%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 797
            M+RK F+ GNWK N   EE K  +  +                         ++   S+  +AAQN +    GAFTGE S ++L  +   +V++GHSERR   +E++  +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +    VA   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFIEAVASKLPSSELVEAGIAAPALTLSTVLEAAKGSELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_STRA3 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype III GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.499e-37
Identity = 92/252 (36.51%), Postives = 127/252 (50.40%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 797
            M+RK F+ GNWK N   EE K  +  +                         ++   S+  +AAQN +    GAFTGE S ++L  +   +V++GHSERR   +E++  +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +    VA   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFIEAVASKLPSSELVEAGIAAPALTLSTVLEAAKGSELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_STRA1 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype Ia GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.499e-37
Identity = 92/252 (36.51%), Postives = 127/252 (50.40%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 797
            M+RK F+ GNWK N   EE K  +  +                         ++   S+  +AAQN +    GAFTGE S ++L  +   +V++GHSERR   +E++  +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +    VA   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFIEAVASKLPSSELVEAGIAAPALTLSTVLEAAKGSELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_FRAP2 (Triosephosphate isomerase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.499e-37
Identity = 91/243 (37.45%), Postives = 133/243 (54.73%), Query Frame = 3
Query:   84 GNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 803
            GNWK NG+S  +K++   ++E                         L + +  V  QN      GA+TGE+SAEML ++   ++++GHSERR+L  E++  V  K+   +   +  + C+GE+LE R+ G    V+  Q   I E +S      V++AYEPVWAIGTG VA+  Q QE H  +R  L   V   +A + +I+YGGS+   N K++ + PDVDG L+GGASLK  EF +II  A
Sbjct:    7 GNWKMNGSSASIKELCKGISEVNYNSEKVAVAVFPSSVYVKEVLAQLPK-EIGVGLQNITFYDNGAYTGELSAEMLHDVGCNYLLIGHSERRSLFGETDQDVFKKLNKIIDTSVVPVVCIGESLEDRQGGRLEKVLTTQLSLILENLSIEQLARVIIAYEPVWAIGTGVVASLEQVQETHQFIRS-LVAKVDENLAKNMKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKASEFNEIINQA 247          
The following BLAST results are available for this feature:
BLAST of DY258647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PARUW4.397e-3745.45Triosephosphate isomerase OS=Protochlamydia amoebo... [more]
TPIS_XANP25.742e-3739.11Triosephosphate isomerase OS=Xanthobacter autotrop... [more]
TPIS_MYCA95.742e-3740.24Triosephosphate isomerase OS=Mycobacterium abscess... [more]
TPIS_LACSS5.742e-3735.77Triosephosphate isomerase OS=Lactobacillus sakei s... [more]
TPIS_CLOBL5.742e-3738.75Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_STRGC7.499e-3736.47Triosephosphate isomerase OS=Streptococcus gordoni... [more]
TPIS_STRA57.499e-3736.51Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA37.499e-3736.51Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA17.499e-3736.51Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_FRAP27.499e-3737.45Triosephosphate isomerase OS=Francisella philomira... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258647 ID=DY258647; Name=DY258647; organism=Citrus clementina; type=EST; length=1267bp
GATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATTCA
ATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAA
TGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATGAAGCTG
AAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTG
TTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCATGTTGCCGC
TCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTG
CTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCT
GAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGT
TGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGA
CTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAA
ACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGC
TTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTC
AGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTC
AGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAA
TGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTAGATGGATTTT
TGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCT
GCCACAGTGAAAAAGAATTGAAGTAAAAACAACCTACTCGGCTTGCTGAT
GCCTGCAGTTTTCTCTTGTATGCTTTCTGGAACTAGCGTTTGAATTTTTG
GGGTCTGTTAGTTGTACCACGCCCTTTCGAGAAAAAAAGTTAAATTTTCA
AAAATTGTAAAAAACCCTTTCCAATTCCAGGGGAATTTAAAACTAACCAT
TGGGGAATTAAAAAAAGTTTGTTTTTTTCCTTCTTGCAAAAAAAAAAAAA
AAAAAAAAACCAAACTTTTTTTGTAAAAAGTTGGGATAAAAAAAAAAACA
TTGTTTATATAATTTGTGTTCCACCAAAAAGGCCCCACTAACAATAAAAA
AAAAAAATATTTTTTTTGCCCCCTCCCCCGGAGAAATCCCCCCCAATAAA
AGAGAAAGACTTAATAAAATAATGGTGGGCCTAAAATAATGTTGTTTTTT
TCTCGCCGGCGCCCCCC
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