DY258647

Overview
NameDY258647
Unique NameDY258647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1267
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBK (Triosephosphate isomerase OS=Clostridium botulinum (strain Okra / Type B1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.671e-36
Identity = 92/238 (38.66%), Postives = 125/238 (52.52%), Query Frame = 3
Query:   66 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNW--DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 773
            R   + GNWK N T +E  ++V  L                         + +  S+  V AQN    + GA+TGE++ +ML  L + +VI+GHSERR   NE+++ V  KV  A    L  I C GE+LE+RE   T  V+  Q K   +++S    + +V+AYEP+WAIGTGK AT  QA E    +R  +KD     VA   RI YGGSV     K   A+ ++DG LVGGASLK
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKPL-VKDAKCDVVVCPTYVCLPAVLEEVKGSNIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGESVADKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLK 238          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_ACIAD (Triosephosphate isomerase OS=Acinetobacter sp. (strain ADP1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.671e-36
Identity = 82/171 (47.95%), Postives = 116/171 (67.84%), Query Frame = 3
Query:  276 GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDN-VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            GA+TGE+SAE+L +  I +V++GHSERR LL +  + +  K+++AL+ G+ VI CVGE+LEQRE G    +V +Q   IA  +S   W + +V+AYEP+WAIGTG+ A+P  AQ +HA++R+ L     A   +   ++YGGSV   N  ELAA PD++G LVGGASL  E
Sbjct:   83 GAYTGEISAELLTDSQIRYVLIGHSERRDLLGDHVEILKAKLSHALNAGMTVIYCVGESLEQREQGLAEQIVLQQICDIAPVVSAEQWQHQIVIAYEPIWAIGTGRTASPEDAQAIHAKIREGLCQITPA--GSQIALLYGGSVKPENAVELAACPDINGALVGGASLNAE 251          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_SACEN (Triosephosphate isomerase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.182e-36
Identity = 104/246 (42.28%), Postives = 128/246 (52.03%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE--KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 770
            MAR+  + GNWK N    E    V+KI  +L E                       ++L+  D       AQ+    + GA+TGEVS  ML  L   +V++GHSERR    E+++ V  KV   L  G+  I CVGE LE RE+G  V     Q     +  K      VV+AYEPVWAIGTGKVAT A AQEV A LR  L D    E+A   R++YGGSV  +N  EL  Q DVDG LVGGASL
Sbjct:    1 MARQPLIAGNWKMNLNHLEAIALVQKIAFSLPEK---YFAKVEVAVIPPFTDIRSVQTLIDGDKLLLKHGAQDVSEHESGAYTGEVSGPMLAKLGCSYVVVGHSERREHHAETDEVVNRKVRAVLKHGMSPILCVGEPLEVREAGGHVEHSTTQLINALKGLKTEQIRQVVVAYEPVWAIGTGKVATAADAQEVCAALRTALADKYGKEIADEVRVLYGGSVKSSNIGELIGQNDVDGALVGGASL 243          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_RALSO (Triosephosphate isomerase OS=Ralstonia solanacearum GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.182e-36
Identity = 101/241 (41.91%), Postives = 125/241 (51.87%), Query Frame = 3
Query:   63 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            AR   V GNWK +G+     +++  +  A                        L  S     AQ+      GAFTGEV+A ML      + I+GHSERR    E++  V  K   AL  G+  I CVGETL QRE+G T  VVA Q +A+ E +S     ++V+AYEPVWAIGTGK AT  QAQ VHA LR  +     A VA    I+YGGSV   N  EL    D+DG L+GGASLK E
Sbjct:    3 ARPKLVVGNWKLHGSLNGNAELLEKIKAA--GQTRAALAVCAPFPYLAQCQSVLAGSSVAWGAQDVSAETRGAFTGEVAASMLSEFGCGYAIVGHSERRTYHGETDAQVAIKALRALEHGITPIVCVGETLAQREAGETELVVARQLEAVLESLSVEQLGHIVVAYEPVWAIGTGKTATSEQAQAVHAFLRGRVA-ACDAGVAQRMPILYGGSVKPDNAAELFTMADIDGGLIGGASLKAE 240          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCS5 (Triosephosphate isomerase OS=Mycoplasma synoviae (strain 53) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.850e-36
Identity = 98/246 (39.84%), Postives = 138/246 (56.10%), Query Frame = 3
Query:   69 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 794
            K  + GNWK N T    K+ +                             + L+ +     +AAQN    + GA+TGEVSA+ML++L++ +VILGHSE+R    E+++ V  K   AL + L  I CVGETLE+  +G T  VV  Q  A  + + +   V++AYEP+WAIGTGKVAT   AQ+V     K++K+  S +    T + YGGSVN  N  EL++Q D+DGFLVGGASLK  +F D++
Sbjct:    3 KKLIVGNWKMNSTFSTTKEFLKEFQSLYSLNSKTYNQKATFAVATPFTNLAALKDNDLNLKLAAQNMSFYEKGAYTGEVSADMLLDLNVSYVILGHSEQRQYHAETDENVNKKARLALEKNLTPIVCVGETLEEYLAGKTKEVVKAQLAASLKDL-DVTKVIVAYEPIWAIGTGKVATAQIAQDV----CKYIKELTSKQ----TVVQYGGSVNAKNIFELSSQEDIDGFLVGGASLKATDFSDLM 239          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_LEIXX (Triosephosphate isomerase OS=Leifsonia xyli subsp. xyli GN=tpiA PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 3.722e-36
Identity = 98/253 (38.74%), Postives = 131/253 (51.78%), Query Frame = 3
Query:   60 MARKFFVGGNWKCN----GTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVA--AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 797
            M R   + GNWK N     +   V+K+  TL +A                        +      +A   Q+      GA+TGE++A  L  L   +VI+GHSERR L NE+++ V  K A A+  G+  I CVGET E  E     AV   Q +A    I +  + V+AYEPVWAIG+G+ ATP QA++V A LR  + + +  EVAA TRI+YGGSV   N      + +VDG LVGGASL   EF  II+
Sbjct:    1 MRRVPLIAGNWKMNLDHLQSIAVVQKLAWTLKDAGHDFGAVEVAVFPPFTDLRSVQTLVAADKLPIAFGGQDVSEHDSGAYTGEIAASFLAALEARYVIIGHSERRTLHNETDEQVAAKTAQAVKNGISPIVCVGETAEDLEKHGASAVPVAQLRAALAGIDSAADFVVAYEPVWAIGSGQAATPEQAEQVAAALRAVIAEALGDEVAAKTRILYGGSVKSGNIAGFMRETNVDGALVGGASLDVAEFAAIIR 253          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_LAWIP (Triosephosphate isomerase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.722e-36
Identity = 91/246 (36.99%), Postives = 129/246 (52.44%), Query Frame = 3
Query:   69 KFFVGGNWKCNGTSEEVKKIVSTL-NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 794
            K  +  NWK N    E K ++  L +  E                     + L  S   + AQN +    GAFTGE+S EML ++   WV++GHSERR ++ E    +  K   ALS G  +I C+GET ++RE+G   +V+ +Q +     I +     +V+AYEPVWAIGTGKVA+       H  +RK L  N+    + + RI+YGGSVN  N   +    +V+G LVGGASL+ E F+ II
Sbjct:    2 KILIAANWKMNKNRLEAKDMIEKLMSMPEGIPPQRDIVLFPPFLAIDTIKEKLKNSTIVIGAQNFYPAPSGAFTGEISLEMLKDVGCSWVLIGHSERRHIIGELPTLIEQKTKLALSYGFSIILCIGETAQEREAGLVNSVLEQQLRTSLTDIPSKAISQLVIAYEPVWAIGTGKVASQQDIITAHTLIRKIL-HNMIGNTSQNIRILYGGSVNSENASSILELDNVNGLLVGGASLQAESFMKII 246          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_BORDL (Triosephosphate isomerase OS=Borrelia duttonii (strain Ly) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.722e-36
Identity = 98/251 (39.04%), Postives = 133/251 (52.99%), Query Frame = 3
Query:   66 RKFFVGGNWKCNGTSEEV----KKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLK-VIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 794
            RK F+ GNWK + TS E     K+IV  +                         K    ++  + AQN      GA T E++  ML+   + +VILGHSE R  L E+++ +  KV   L    K +I CVGETLE+RE G T+ VV  Q +     +  S+   ++LAYEPVWAIGTGK AT  +AQEVH  +R  ++   S   A +  I YGGSVN  N + L  + D+DG L+GGASLK + F+ II
Sbjct:    2 RKVFLAGNWKMHYTSVEAADVAKQIVDGVYNINNNVVVMVTPTFTSLCKVCRVTKG---TNVLLGAQNMSYENSGARTSEIAPSMLLEFGVDYVILGHSECRTYLGENDEIINKKVLTGLKHPFKYLILCVGETLEEREKGKTLDVVLNQVRNGLASVYESDLQRIILAYEPVWAIGTGKTATKEEAQEVHKAIRLEIQSLYSKSAADNIIIQYGGSVNVDNVEGLMGENDIDGALIGGASLKADSFLKII 249          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCUA (Triosephosphate isomerase OS=Mycobacterium ulcerans (strain Agy99) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.861e-36
Identity = 101/249 (40.56%), Postives = 129/249 (51.81%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI-----AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            M+RK  + GNWK N    E    V+KI  +L +                           +       Q+      GA+TG++S   L  L   +V++GHSERR   NE +  V  K A AL   L  I C+GE L+ RE+G+ VA   EQ +       AE+IS    VV+AYEPVWAIGTG+VA  A AQEV A +R  L    S ++A + R++YGGSVN  N  EL AQ DVDG LVGGASL  E
Sbjct:    1 MSRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYYDKVDVTVIPPFTDLRSVQTLVDGDKLRLTYGGQDLSQHDSGAYTGDISGAFLAKLGCSFVVVGHSERRTYHNEDDALVAAKAAAALKHDLTPIVCIGEHLDVREAGNHVAHNVEQLRGSLSGLSAEQISK---VVIAYEPVWAIGTGRVAGAADAQEVCAAIRSELGSLASPQIADAVRVLYGGSVNAKNIGELIAQADVDGGLVGGASLDGE 246          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCMM (Triosephosphate isomerase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.861e-36
Identity = 101/249 (40.56%), Postives = 129/249 (51.81%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI-----AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            M+RK  + GNWK N    E    V+KI  +L +                           +       Q+      GA+TG++S   L  L   +V++GHSERR   NE +  V  K A AL   L  I C+GE L+ RE+G+ VA   EQ +       AE+IS    VV+AYEPVWAIGTG+VA  A AQEV A +R  L    S ++A + R++YGGSVN  N  EL AQ DVDG LVGGASL  E
Sbjct:    1 MSRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYYDKVDVTVIPPFTDLRSVQTLVDGDKLRLTYGGQDLSQHDSGAYTGDISGAFLAKLGCSFVVVGHSERRTYHNEDDALVAAKAAAALKHDLTPIVCIGEHLDVREAGNHVAHNVEQLRGSLSGLSAEQISK---VVIAYEPVWAIGTGRVAGAADAQEVCAAIRSELGSLASPQIADAVRVLYGGSVNAKNIGELIAQADVDGGLVGGASLDGE 246          
The following BLAST results are available for this feature:
BLAST of DY258647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CLOBK1.671e-3638.66Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_ACIAD1.671e-3647.95Triosephosphate isomerase OS=Acinetobacter sp. (st... [more]
TPIS_SACEN2.182e-3642.28Triosephosphate isomerase OS=Saccharopolyspora ery... [more]
TPIS_RALSO2.182e-3641.91Triosephosphate isomerase OS=Ralstonia solanacearu... [more]
TPIS_MYCS52.850e-3639.84Triosephosphate isomerase OS=Mycoplasma synoviae (... [more]
TPIS_LEIXX3.722e-3638.74Triosephosphate isomerase OS=Leifsonia xyli subsp.... [more]
TPIS_LAWIP3.722e-3636.99Triosephosphate isomerase OS=Lawsonia intracellula... [more]
TPIS_BORDL3.722e-3639.04Triosephosphate isomerase OS=Borrelia duttonii (st... [more]
TPIS_MYCUA4.861e-3640.56Triosephosphate isomerase OS=Mycobacterium ulceran... [more]
TPIS_MYCMM4.861e-3640.56Triosephosphate isomerase OS=Mycobacterium marinum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258647 ID=DY258647; Name=DY258647; organism=Citrus clementina; type=EST; length=1267bp
GATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATTCA
ATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAA
TGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATGAAGCTG
AAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTG
TTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCATGTTGCCGC
TCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTG
CTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCT
GAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGT
TGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGA
CTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAA
ACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGC
TTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTC
AGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTC
AGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAA
TGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTAGATGGATTTT
TGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCT
GCCACAGTGAAAAAGAATTGAAGTAAAAACAACCTACTCGGCTTGCTGAT
GCCTGCAGTTTTCTCTTGTATGCTTTCTGGAACTAGCGTTTGAATTTTTG
GGGTCTGTTAGTTGTACCACGCCCTTTCGAGAAAAAAAGTTAAATTTTCA
AAAATTGTAAAAAACCCTTTCCAATTCCAGGGGAATTTAAAACTAACCAT
TGGGGAATTAAAAAAAGTTTGTTTTTTTCCTTCTTGCAAAAAAAAAAAAA
AAAAAAAAACCAAACTTTTTTTGTAAAAAGTTGGGATAAAAAAAAAAACA
TTGTTTATATAATTTGTGTTCCACCAAAAAGGCCCCACTAACAATAAAAA
AAAAAAATATTTTTTTTGCCCCCTCCCCCGGAGAAATCCCCCCCAATAAA
AGAGAAAGACTTAATAAAATAATGGTGGGCCTAAAATAATGTTGTTTTTT
TCTCGCCGGCGCCCCCC
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