DY258647

Overview
NameDY258647
Unique NameDY258647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1267
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_SILPO (Triosephosphate isomerase OS=Silicibacter pomeroyi GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.083e-35
Identity = 99/248 (39.92%), Postives = 125/248 (50.40%), Query Frame = 3
Query:   66 RKFFVGGNWKCNGTSEEVKKI--VSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 803
            R+    GNWK NGT   +  +  ++  + A                       S +R    +  Q+C     GA TG++SA ML +     VILGHSERRA   E++  V DK   AL  GL  I C+GETL QRE+G T+ VV  Q         +   VV+AYEPVWAIGTG V T  Q  EVH  LR+ L     +E A + R++YGGSV   N  E+ A  +VDG LVGGASL       I SA
Sbjct:    2 RRKLAAGNWKMNGTGAALDALEAIAGAHSAAAVDLLICPPATLLYRAAQVAEGSRVR----IGGQDCHAVTAGAHTGDISAMMLADAGASAVILGHSERRADHGETDAQVCDKARAALEAGLIAIICIGETLAQREAGQTLDVVCAQLAGSVPDGIDGTRVVVAYEPVWAIGTGLVPTLEQIAEVHDTLRQQLIGRFGSETAEAIRLLYGGSVKPGNAAEIFAVSNVDGALVGGASLTAADFSPIVSA 245          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_RHOP5 (Triosephosphate isomerase OS=Rhodopseudomonas palustris (strain BisA53) GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.083e-35
Identity = 93/239 (38.91%), Postives = 123/239 (51.46%), Query Frame = 3
Query:   63 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRS--DFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 773
            A +  + GNWK NG   ++ +  + L  A                      + L      F V AQ+C     GA TG++SAEMLV+     +I+GHSERRA   E++  V  K   A   G   I CVGET  +R++G T+ VV  Q        +  +N V+AYEPVWAIGTG   T    ++VH  +R  L      E  A+ RI+YGGSV  +N KEL A P+V+G LVGGASLK
Sbjct:    4 AIRALIAGNWKMNGLKAQLAEFEAMLAGAPALADKADLLVCPPATLLHAFGQKLGNGARSFAVGAQDCHANVSGAHTGDLSAEMLVDAGASAIIVGHSERRADHGETDSVVRAKAEAAWRAGAVAIVCVGETQAERDAGQTLDVVGRQLAGSLPDGATAENTVVAYEPVWAIGTGLTPTANDVEQVHKFIRDCLTKRFGGE-GAAVRILYGGSVKPSNAKELMAVPEVNGALVGGASLK 241          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_RALEH (Triosephosphate isomerase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.083e-35
Identity = 89/177 (50.28%), Postives = 107/177 (60.45%), Query Frame = 3
Query:  249 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 773
            AQ+      GAFTGEVSA M+      +V++GHSERR    E++  V  K   AL  G+  + CVGETL QRE+G T AVV  Q +A+  A  +     VVLAYEPVWAIGTGK AT  QAQ VHA LR  +     A VA    I+YGGSV   N  EL +  D+DG L+GGASLK
Sbjct:   60 AQDVSAEARGAFTGEVSASMVGEFGCTYVLVGHSERRTYHGETDQTVAAKALRALEFGIVPVVCVGETLAQREAGETEAVVGRQLQAVLDALTVEQLSRVVLAYEPVWAIGTGKTATSEQAQAVHAFLRGQVAAR-DAGVAERMAILYGGSVKPDNAAELFSMTDIDGGLIGGASLK 235          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_BORHD (Triosephosphate isomerase OS=Borrelia hermsii (strain DAH) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.847e-35
Identity = 95/251 (37.85%), Postives = 131/251 (52.19%), Query Frame = 3
Query:   66 RKFFVGGNWKCNGTSEEV----KKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLK-VIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 794
            RK F+ GNWK + TS E     K+IV  +                         K    S+  + AQN      GA T E+S  ML+   + +VILGHSE R  L ++++ +  K+   L    K +I C+GETL +RE+  T+ VV  Q +     +S  D   ++LAYEPVWAIGTGK AT  +AQEVH  +R  ++   S   A    I YGGSVN  N   L  + D+DG L+GGASLK + F++I+
Sbjct:    2 RKMFLAGNWKMHYTSVEAAGVAKQIVDGVQNINDDVVIMITPAFTSLCKVCEVTKG---SNVLLGAQNMSYENSGARTSEISPSMLLEFGVDYVILGHSECRTYLGDTDEVINKKILAGLKHPFKYLILCIGETLSERENNKTLDVVLNQIRRGLMSVSESDLKRIILAYEPVWAIGTGKTATKEEAQEVHRAIRLEIESLYSTSAADDIIIQYGGSVNVDNVGGLMGENDIDGALIGGASLKADSFLNIV 249          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_GRABC (Triosephosphate isomerase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.412e-35
Identity = 93/236 (39.41%), Postives = 122/236 (51.69%), Query Frame = 3
Query:   78 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTK-AIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            + GNWK NG     + ++  L +A                       S+L  S   V AQ+C + + GA TG++SAEMLV     WVILGHSERR    E ++ V +KV  A   GL  I CVGET ++R SG    +V  Q K ++ +  +   N V+AYEPVWAIGTG+ AT      +HA +R+ L      E     RI+YGGSV   N   L   P+V G LVGGASL  +
Sbjct:    5 IAGNWKMNGLRSTSESLLQALRDAAPHALRNCDMLICPPATLIAQAASVLAGSGIEVGAQDCHMARSGAHTGDLSAEMLVEAGAHWVILGHSERRRDHGELSETVREKVIAARQFGLTPIVCVGETEDERASGRETEIVGWQIKGSLPDGFAADSNGVIAYEPVWAIGTGRTATVEDVAMMHAFIREELVRQF-GEAGRGVRILYGGSVKPENAASLLRVPEVGGALVGGASLSAQ 239          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_BUCAP (Triosephosphate isomerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.412e-35
Identity = 89/250 (35.60%), Postives = 133/250 (53.20%), Query Frame = 3
Query:   66 RKFFVGGNWKCNGTSEEVKKIVSTL-NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK--DNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 797
            +K  +  NWK NG+ + +   ++ L ++                       K +   + H+AAQN  V   GAFTGE SA M+ ++ + ++I+GHSERR L NE+N+ +  K     +  L  I C+GET  +++S  T  ++ EQ  +I        + N V+AYEP+W+IGTG  A P   Q +H  ++ ++K  D VSAE   +  + YGGSV   N      QPD+DG L+G ASLK  EF+ IIK
Sbjct:    2 KKKIIAANWKLNGSIKTISYFLTFLKSQISSFLKNNIIIIAPPTVFLERVYKDINSINIHLAAQNIDVNLTGAFTGENSALMMKDIGVKYIIIGHSERRLLHNENNEIIAKKFCLVKNLNLVPILCIGETEAEKKSNKTEKILKEQLNSIFNSFGEKAFRNAVIAYEPIWSIGTGVSADPKNVQLIHKFIKNYIKKYDIVSAE---NLIVQYGGSVTSLNAGNFLKQPDIDGLLIGSASLKHEEFLKIIK 248          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_RALEJ (Triosephosphate isomerase OS=Ralstonia eutropha (strain JMP134) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.151e-35
Identity = 88/179 (49.16%), Postives = 108/179 (60.34%), Query Frame = 3
Query:  249 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            AQ+      GAFTGEV+A ML      + ++GHSERR    ES+  V  K   AL  G+  + CVGETL QRE+G T  VV  Q +A  + +S      VVLAYEPVWAIGTGK A+  QAQ VHA LR  +++   A VA    I+YGGSV   N  EL +  D+DG L+GGASLK E
Sbjct:   60 AQDVSAEARGAFTGEVAASMLGEFGCTYALVGHSERRTYHGESDAVVAAKALRALEFGIIPVICVGETLAQREAGETEVVVGRQLQAALDALSVEQLGRVVLAYEPVWAIGTGKTASSEQAQAVHAFLRAEVRER-DAGVADRMAILYGGSVKPDNAAELFSMSDIDGGLIGGASLKSE 237          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_HYPNA (Triosephosphate isomerase OS=Hyphomonas neptunium (strain ATCC 15444) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.151e-35
Identity = 87/243 (35.80%), Postives = 127/243 (52.26%), Query Frame = 3
Query:   78 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 803
            + GNWK NG    + ++     E                            S   +  + C   + GA TG+++AEML +    +VI+GHSERRA   E++  V  + + AL  G+  I CVGETL+QR++G  + V+  Q      + +    +V+AYEPVWAIGTG+VAT  Q  EVH  +R  L      +   +TRI+YGGS+N  N  E+ A  +V+G L+GGASLK  +F+ I + A
Sbjct:    6 IAGNWKMNGLMANLAEVERVAAEVPASSEGAETLLCLPATLIHAGSAKSEGSGLKIGGETCHANEKGAHTGDLAAEMLKDAGASYVIVGHSERRADHGETDAVVAAQASAALRAGITPIICVGETLDQRDAGEVLTVITTQMAESIPEGAEAAAIVIAYEPVWAIGTGRVATSEQIAEVHTSIRNLLVRRF-GDAGRTTRILYGGSMNPGNAAEILAVAEVNGGLIGGASLKAADFLAIYRLA 247          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_STRCO (Triosephosphate isomerase OS=Streptomyces coelicolor GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 4.115e-35
Identity = 89/188 (47.34%), Postives = 116/188 (61.70%), Query Frame = 3
Query:  249 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGS----TVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIK 797
            AQ+     GGA+TGE+S  ML  L   +V +GHSERR    E+++ V  KV  A   GL  I CVGE L+ RE+G+    T+A V    K +A + +  ++VV+AYEPVWAIGTGKV     AQEV A +R  L +  S E+A   RI YGGSV   N  E+ A+PD+DG LVGGASL   EF+ I++
Sbjct:   69 AQDISAHDGGAYTGEISGPMLAKLKCTYVAVGHSERRQYHAETDEIVNAKVKAAYKHGLTPILCVGEELDVREAGNHVEHTLAQVEGGLKDLAAEQA--ESVVIAYEPVWAIGTGKVCGADDAQEVCAAIRGKLAELYSQELADKVRIQYGGSVKSGNVAEIMAKPDIDGALVGGASLDSDEFVKIVR 254          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGI (Triosephosphate isomerase OS=Mycobacterium gilvum (strain PYR-GCK) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 4.115e-35
Identity = 97/249 (38.96%), Postives = 126/249 (50.60%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI-----AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            M RK  + GNWK N    E    V+KI  +L +                           +      AQ+      GA+TGE+S   L  L   + ++GHSERR    E+++ V  K   AL  GL  I C+GE LE RE+G+ V       +       AE+I+     V+AYEPVWAIGTG+VA+ A AQEV   +R  L +  SA+VAA  R++YGGSVN  N  E+  Q DVDG LVGGASL  E
Sbjct:    1 MTRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDRVDVTVIPPFTDLRSVQTLVDGDKLRLTYGAQDVSQHDSGAYTGEISGAFLAKLGCTFAVVGHSERRTYHGETDELVAAKATAALKHGLTPIVCIGEQLEVREAGNHVEFNVNSLRGSLAGLSAEQIAQ---TVIAYEPVWAIGTGRVASAADAQEVCKAIRDELGNLASADVAAGVRVLYGGSVNAKNVGEIVGQGDVDGALVGGASLDGE 246          
The following BLAST results are available for this feature:
BLAST of DY258647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SILPO1.083e-3539.92Triosephosphate isomerase OS=Silicibacter pomeroyi... [more]
TPIS_RHOP51.083e-3538.91Triosephosphate isomerase OS=Rhodopseudomonas palu... [more]
TPIS_RALEH1.083e-3550.28Triosephosphate isomerase OS=Ralstonia eutropha (s... [more]
TPIS_BORHD1.847e-3537.85Triosephosphate isomerase OS=Borrelia hermsii (str... [more]
TPIS_GRABC2.412e-3539.41Triosephosphate isomerase OS=Granulibacter bethesd... [more]
TPIS_BUCAP2.412e-3535.60Triosephosphate isomerase OS=Buchnera aphidicola s... [more]
TPIS_RALEJ3.151e-3549.16Triosephosphate isomerase OS=Ralstonia eutropha (s... [more]
TPIS_HYPNA3.151e-3535.80Triosephosphate isomerase OS=Hyphomonas neptunium ... [more]
TPIS_STRCO4.115e-3547.34Triosephosphate isomerase OS=Streptomyces coelicol... [more]
TPIS_MYCGI4.115e-3538.96Triosephosphate isomerase OS=Mycobacterium gilvum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258647 ID=DY258647; Name=DY258647; organism=Citrus clementina; type=EST; length=1267bp
GATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATTCA
ATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAA
TGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATGAAGCTG
AAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTG
TTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCATGTTGCCGC
TCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTG
CTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCT
GAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGT
TGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGA
CTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAA
ACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGC
TTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTC
AGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTC
AGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAA
TGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTAGATGGATTTT
TGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCT
GCCACAGTGAAAAAGAATTGAAGTAAAAACAACCTACTCGGCTTGCTGAT
GCCTGCAGTTTTCTCTTGTATGCTTTCTGGAACTAGCGTTTGAATTTTTG
GGGTCTGTTAGTTGTACCACGCCCTTTCGAGAAAAAAAGTTAAATTTTCA
AAAATTGTAAAAAACCCTTTCCAATTCCAGGGGAATTTAAAACTAACCAT
TGGGGAATTAAAAAAAGTTTGTTTTTTTCCTTCTTGCAAAAAAAAAAAAA
AAAAAAAAACCAAACTTTTTTTGTAAAAAGTTGGGATAAAAAAAAAAACA
TTGTTTATATAATTTGTGTTCCACCAAAAAGGCCCCACTAACAATAAAAA
AAAAAAATATTTTTTTTGCCCCCTCCCCCGGAGAAATCCCCCCCAATAAA
AGAGAAAGACTTAATAAAATAATGGTGGGCCTAAAATAATGTTGTTTTTT
TCTCGCCGGCGCCCCCC
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