DY258647

Overview
NameDY258647
Unique NameDY258647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1267
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_RUBXD (Triosephosphate isomerase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.564e-34
Identity = 81/188 (43.09%), Postives = 117/188 (62.23%), Query Frame = 3
Query:  249 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 803
            AQN +    GA+TGEVSA ML+++     I+GHSERR L  E+++ V  K   A+  GL  + CVGET E+R++G     V+ Q +A+ E +  ++   VV AYEP+WAIGTGK A+P  AQ+    +R  L++      A   R++YGGS+   N  E+ AQ DVDG LVGGASL+   F+ ++++A
Sbjct:   67 AQNFFYEDSGAYTGEVSAPMLLDVGARASIVGHSERRELFCETDESVARKARRAVEAGLLPVVCVGETEEERDAGRMWEKVSGQVRAVVEGLGDASGGRVVFAYEPIWAIGTGKTASPEDAQDAIGRIRGLLRELRGEGFAEEARLLYGGSIKPENISEIMAQKDVDGGLVGGASLEVGSFLQLVEAA 254          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_PROAC (Triosephosphate isomerase OS=Propionibacterium acnes GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.564e-34
Identity = 94/246 (38.21%), Postives = 123/246 (50.00%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLL------RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 773
            M+R   + GNWK N        +V  L EA                      + +       +      AQ+      GA+TGEVS  ML  L   +V++GHSERR   NES++ V  K    +  G+  I C GE LE R++G  V     Q KA  + I       +V+AYEP+WAIGTG+ AT   AQEV   +R+ +K+   A  A + RI YGGSV  AN  E+ A+PDVDG LVGGASLK
Sbjct:    1 MSRTPIMAGNWKMNLDHVAATSLVQDLGEALKAAGYDSSKSEAVVIPPFTDIRPVAIIIDGDKLPIAYGAQDISAHDDGAYTGEVSGAMLSKLGCRYVVVGHSERREYHNESDELVNAKAKKVIENGMTPIICCGEALEVRKAGKHVEHTVGQIKADLDGIPAEQVAKLVIAYEPIWAIGTGETATADDAQEVCQAIREAVKELYDAPTAEAVRIQYGGSVKPANVAEIMAKPDVDGALVGGASLK 246          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH7 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 7448) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.042e-34
Identity = 91/241 (37.76%), Postives = 126/241 (52.28%), Query Frame = 3
Query:   69 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSL----LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            K  + GNWK N T  E +  +   +                         SL    L     +AAQN      GAFTGE+S +ML +L   +VI+GHSERR +  E ++ + +K+  A    L  + CVGE+L + E+G T  V+  Q  AI + + N+   ++AYEP+WAIGTGK AT A A++V       +K+N   +    T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAI-KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCG----MIKENFGKD----TTVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_ENTFA (Triosephosphate isomerase OS=Enterococcus faecalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.042e-34
Identity = 87/240 (36.25%), Postives = 123/240 (51.25%), Query Frame = 3
Query:   66 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            RK  + GNWK N T  E +     +  A                       +L  S+  +AAQNC+    GAFTGE S   + +L + +VI+GHSERR   +E+++ +  K     + G+  I C GETLE  E+G T   +  Q       +SN    ++V+AYEP+WAIGTGK A    A E+   +R  ++     EV+ + RI YGGSV   N  E  A+ +VDG LVGGASL+ +
Sbjct:    2 RKPIIAGNWKMNKTLSEAQSFAEAVKNAVPSNDVVDAVIGSPALFLAPLAWNLKDSEVKLAAQNCYWENAGAFTGENSPAAIADLGVDYVIIGHSERREYFHETDEDINKKAKAIFANGMTPIFCCGETLETYEAGKTAEWIEGQITKGLVGLSNEQVASMVIAYEPIWAIGTGKSADANIADEICGVVRSTVEKLYGKEVSEAVRIQYGGSVKPENIAEYMAKENVDGALVGGASLEAD 241          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS1_RHIME (Triosephosphate isomerase 1 OS=Rhizobium meliloti GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.667e-34
Identity = 90/235 (38.30%), Postives = 121/235 (51.49%), Query Frame = 3
Query:   78 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            V GNWK NGT   + +I +     +                      +L   S   + AQ+C  ++ GA TGEVSAEM+ +     VI+GHSERR    E +  V  K   A    L  I CVGET E+R++G T+ ++  Q        +  +N V+AYEPVWAIGTG   T +  +E HA +R+ L     AE     RI+YGGSV  +N KEL    +VDG L+GGASLK +
Sbjct:    9 VAGNWKMNGTRASLDQIKAMAEGVKGDLSARVDALICPPATLLYVATALCDDSPLMIGAQDCHQKQSGAHTGEVSAEMVADCFGTHVIVGHSERRTDHGEGDALVRAKTEAAHGADLVAIVCVGETEEERKAGRTLDILKRQLSESLPDQATAENTVIAYEPVWAIGTGLTPTVSDVEEAHAFMRRELVSRFGAE-GGKMRILYGGSVKPSNAKELMGVANVDGALIGGASLKAD 242          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHY (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.484e-34
Identity = 89/241 (36.93%), Postives = 125/241 (51.87%), Query Frame = 3
Query:   69 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSL----LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            K  + GNWK N T  E +  +   +                         SL    L     +AAQN      GAFTGE+S +ML +L   +VI+GHSERR +  E ++ + +K+  A    L  + CVGE+L + E+G T  V+  Q  AI + + N+   ++AYEP+WAIGTGK AT A A++V   +++            +T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAI-KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKE--------NFGKNTMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHR (Triosephosphate isomerase OS=Mycoplasma hyorhinis GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.484e-34
Identity = 89/246 (36.18%), Postives = 133/246 (54.07%), Query Frame = 3
Query:   69 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 794
            K  + GNWK N T  + K+  S  N+                        +    +     +A QN    + GA+TGE+SA+ML++L++ + I+GHSERR    E++  V  K   A+   +  + CVGETLE+ E+  T  V+  Q K   + + +   V++AYEP+WAIGTGK ATP QAQ+V   +RK    N++        I+YGGSV+  N ++L  Q D++G LVGGASLK + FI ++
Sbjct:    3 KTIIIGNWKMNKTFTQTKEFFSAFNQLYIENKNKINQNLDFAVALPAINVAAFSKNTTKLELAVQNMSQFEKGAYTGEISAQMLLDLNVKYAIIGHSERRQYFKETDLDVNAKTQQAIKNNIIPVVCVGETLEEYEAQKTSQVIEYQLKNSLKDV-DLSKVIVAYEPIWAIGTGKTATPEQAQQVCKFIRKQTNKNLT--------ILYGGSVSQENIEQLLNQADINGALVGGASLKVDSFIKLL 239          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHJ (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.484e-34
Identity = 89/241 (36.93%), Postives = 125/241 (51.87%), Query Frame = 3
Query:   69 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSL----LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            K  + GNWK N T  E +  +   +                         SL    L     +AAQN      GAFTGE+S +ML +L   +VI+GHSERR +  E ++ + +K+  A    L  + CVGE+L + E+G T  V+  Q  AI + + N+   ++AYEP+WAIGTGK AT A A++V   +++            +T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAI-KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKE--------NFGKNTMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH2 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 232) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.484e-34
Identity = 89/241 (36.93%), Postives = 125/241 (51.87%), Query Frame = 3
Query:   69 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSL----LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            K  + GNWK N T  E +  +   +                         SL    L     +AAQN      GAFTGE+S +ML +L   +VI+GHSERR +  E ++ + +K+  A    L  + CVGE+L + E+G T  V+  Q  AI + + N+   ++AYEP+WAIGTGK AT A A++V   +++            +T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAI-KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKE--------NFGKNTMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_STRMU (Triosephosphate isomerase OS=Streptococcus mutans GN=tpiA PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 4.550e-34
Identity = 88/252 (34.92%), Postives = 128/252 (50.79%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 797
            M+RK  + GNWK N T+ E ++ +  +                         K +  ++  VAAQNC+    GAFTGE S   L  L + +VI+GHSERR   +E++  +  K        +  I C GE+LE  E+G T   +  Q  A  + +S     ++V+AYEP+WAIGTGK A    A ++   +R  ++     EVA + RI YGGSV   N  E  A+ +VDG LVGGASL+ +     +D +K
Sbjct:    1 MSRKPIIAGNWKMNKTAAEAREFIDAVKNNIPSNNLVDTVIGSPALFLEGMKKGVKGTELQVAAQNCYWEDFGAFTGETSPAALAALGVDYVIIGHSERRDYFHETDQEINKKAHAIFKHKMTPILCCGESLETYEAGKTAEWIEGQITADLKGLSAEQVSSMVIAYEPIWAIGTGKSADANIADDICGVVRATVEKLYGKEVAQAVRIQYGGSVKPENVAEYMAKENVDGALVGGASLQADSFLALLDFVK 252          
The following BLAST results are available for this feature:
BLAST of DY258647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_RUBXD1.564e-3443.09Triosephosphate isomerase OS=Rubrobacter xylanophi... [more]
TPIS_PROAC1.564e-3438.21Triosephosphate isomerase OS=Propionibacterium acn... [more]
TPIS_MYCH72.042e-3437.76Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_ENTFA2.042e-3436.25Triosephosphate isomerase OS=Enterococcus faecalis... [more]
TPIS1_RHIME2.667e-3438.30Triosephosphate isomerase 1 OS=Rhizobium meliloti ... [more]
TPIS_MYCHY3.484e-3436.93Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCHR3.484e-3436.18Triosephosphate isomerase OS=Mycoplasma hyorhinis ... [more]
TPIS_MYCHJ3.484e-3436.93Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCH23.484e-3436.93Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_STRMU4.550e-3434.92Triosephosphate isomerase OS=Streptococcus mutans ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258647 ID=DY258647; Name=DY258647; organism=Citrus clementina; type=EST; length=1267bp
GATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATTCA
ATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAA
TGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATGAAGCTG
AAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTG
TTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCATGTTGCCGC
TCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTG
CTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCT
GAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGT
TGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGA
CTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAA
ACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGC
TTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTC
AGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTC
AGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAA
TGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTAGATGGATTTT
TGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCT
GCCACAGTGAAAAAGAATTGAAGTAAAAACAACCTACTCGGCTTGCTGAT
GCCTGCAGTTTTCTCTTGTATGCTTTCTGGAACTAGCGTTTGAATTTTTG
GGGTCTGTTAGTTGTACCACGCCCTTTCGAGAAAAAAAGTTAAATTTTCA
AAAATTGTAAAAAACCCTTTCCAATTCCAGGGGAATTTAAAACTAACCAT
TGGGGAATTAAAAAAAGTTTGTTTTTTTCCTTCTTGCAAAAAAAAAAAAA
AAAAAAAAACCAAACTTTTTTTGTAAAAAGTTGGGATAAAAAAAAAAACA
TTGTTTATATAATTTGTGTTCCACCAAAAAGGCCCCACTAACAATAAAAA
AAAAAAATATTTTTTTTGCCCCCTCCCCCGGAGAAATCCCCCCCAATAAA
AGAGAAAGACTTAATAAAATAATGGTGGGCCTAAAATAATGTTGTTTTTT
TCTCGCCGGCGCCCCCC
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