DY258647

Overview
NameDY258647
Unique NameDY258647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1267
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJA (Triosephosphate isomerase OS=Synechococcus sp. (strain JA-3-3Ab) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.942e-34
Identity = 94/249 (37.75%), Postives = 126/249 (50.60%), Query Frame = 3
Query:   66 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLL-----RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 794
            R   + GNWK + T  E ++ +     A                       +++      S   V AQN      GAFTGE+S  ML  L + +VI+GHSERR    E+++ V  ++A A   GL  I CVGE+L+QRE G T + +  Q       I +  N+V+AYEP+WAIGTGK    A+A  V   +R+ L        A    I+YGGSV  +N  EL AQP +DG LVGGASL P EF  I+
Sbjct:    2 RPILIAGNWKMHKTQAEARQFLREFRPALQASSAGVRPQRQIILCVPFTDLAVVVEETRGSGMAVGAQNLHWEDQGAFTGEISGPMLAELGVRYVIVGHSERRQYFGETDETVNRRLAAAQRHGLTPILCVGESLQQREQGLTESWIVGQLDRALPGI-DLRNLVIAYEPIWAIGTGKTCAAAEANRVIGLIRQHLG-------ADHLPILYGGSVKASNIDELMAQPQIDGVLVGGASLDPQEFARIV 242          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_STRAW (Triosephosphate isomerase OS=Streptomyces avermitilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.942e-34
Identity = 84/186 (45.16%), Postives = 110/186 (59.14%), Query Frame = 3
Query:  249 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIK 797
            AQ+      GA+TGE+S  ML  L   +V +GHSERR   +E+++ V  KV  +   GL  I CVGE LE RE+G+ V     Q +   + +     + +V+AYEPVWAIGTGKV     AQEV A +R  L +  S E+A   RI YGGSV   N  E+ A+PD+DG LVGGASL   EF+ I +
Sbjct:   69 AQDVSAHDSGAYTGEISGSMLAKLKCTYVAVGHSERRQYHHETDEIVNAKVKASFRHGLIPILCVGEELEVREAGNHVTHTLTQVEGGLKDVPAEQAETIVIAYEPVWAIGTGKVCGADDAQEVCAAIRAKLAELYSQELADQVRIQYGGSVKSGNVAEIMAKPDIDGALVGGASLDADEFVKIAR 254          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_LACLM (Triosephosphate isomerase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.942e-34
Identity = 89/245 (36.33%), Postives = 127/245 (51.84%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            M+RK  + GNWK N T  E +  V  +                              S+  +AA+N +    GAFTGE S   +V+L I ++I+GHSERR   +E+++ +  K     + G   I C GETLE  E+G T   V+ Q +A      AE++SN   +V+AYEP+WAIGTGK AT   A E    +R  ++     EV+ + RI YGGSV     + L A+ ++DG LVGGASL+ +
Sbjct:    1 MSRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQGSELKLAAENSYFENAGAFTGENSPAAIVDLGIEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLTAEQVSN---LVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKLYGKEVSEAVRIQYGGSVKPETIEGLMAKENIDGALVGGASLEAD 242          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_BRASB (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.942e-34
Identity = 92/242 (38.02%), Postives = 125/242 (51.65%), Query Frame = 3
Query:   78 VGGNWKCNGTSEEVKKIVSTL-NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 797
            + GNWK NG      +  + L   AE                     K+       V AQ+C  +  GA TG++SAEML +     +I+GHSERRA   ES+  V  K       GL  I CVGET +QR++G T+ ++  Q      + S   N+ +AYEPVWAIGTG   T    +++HA +R  L +  + E  A  RI+YGGSV  +N  EL A  +V+G LVGGASLK  +F+ I K
Sbjct:    9 IAGNWKMNGLKASTAEFEAMLAGAAEVTGKADLLVCPPATLLAGFADKARGTRAVAVGAQDCHAKASGAHTGDLSAEMLADAGASAIIVGHSERRADHGESDVVVHQKTEAVWRAGLVAIVCVGETQQQRDAGQTLDILRGQLNLSLPQGSTAANLTVAYEPVWAIGTGLTPTAKDVEQIHAFIRTLLIERFNGE-GARMRILYGGSVKPSNAAELMAVANVNGALVGGASLKAADFLAIAK 249          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_AMOA5 (Triosephosphate isomerase OS=Amoebophilus asiaticus (strain 5a2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.942e-34
Identity = 88/254 (34.65%), Postives = 132/254 (51.97%), Query Frame = 3
Query:   66 RKFFVGGNWKCNGTSEE---VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI-----SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 800
            ++  +  NWK N   +E   + K ++   +AE                             H+ AQNC  +  GAFTGEVSA ML ++ + +V++GHSERR    E ND +  K+   LS  L+ + C GE L  RES    A + +Q   IAE +          V++AYEP+WAIGTG + + A+ +E+   +R  LK   +  +A +  I+YGGS N +N  +L + P ++G L+GGASL   EFI I++S
Sbjct:    2 QRTIIAANWKMNKNFQEGLQLAKEITQFIQAEPLAGAQIILFPSFIHLEGISKLLTPEVKLHLGAQNCHDQIAGAFTGEVSAAMLASIDVRYVLVGHSERRQNFAEDNDLIAKKIDAILSCKLQPVFCCGEPLSVRESNQHYAFIEQQ---IAESLFHLTPDELQQVIIAYEPIWAIGTGLIPSLAEIEEMQQTIRNILKKQYNTVLADNMAILYGGSCNASNITKLISLPGINGVLIGGASLHFKEFIHILRS 252          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_SYNR3 (Triosephosphate isomerase OS=Synechococcus sp. (strain RCC307) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.761e-34
Identity = 87/240 (36.25%), Postives = 125/240 (52.08%), Query Frame = 3
Query:   63 ARKFFVGGNWKCNGTSEEVKKIVST-LNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            +R   + GNWK + T  + K+  +  L +                       ++L  SD  +A+QN   +  GAFTGE+SAEML+ L + + I+GHSE R   +ES++ +  +   + + GL  I CVGE+ EQR S  T  V+  Q +   E I     +V+AYEP+WAIGTGK     +A  V   +R W+          +  I YGGSV   N  EL A+ D+DG LVGGASL+P+
Sbjct:    5 SRPVVIAGNWKMHMTCAQAKQYAAAFLPQVANAPKDRSIVLAPPFTAISTLQEALAGSDVQIASQNVHWKDSGAFTGEISAEMLLELGVGYTIVGHSEPRKYFSESDEQINQRARASQAAGLIPILCVGESDEQRSSNETERVIRRQVEQGLEGIDP-SKLVVAYEPIWAIGTGKTCESEEANRVCGLIRNWVG-------YPNLTIQYGGSVKPGNIDELMAKSDIDGVLVGGASLEPD 236          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_PEDPA (Triosephosphate isomerase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.761e-34
Identity = 90/245 (36.73%), Postives = 127/245 (51.84%), Query Frame = 3
Query:   78 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQ-TKAI----AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 794
            + GNWK N   +E ++ +  +                                   AA+N +    GAFTGE S + L  + + +V++GHSERR    E+++ +  K     +  +  I C GETLEQRE+G T   VA Q T A+    AE+++     V+AYEP+WAIGTGK A+  QAQEV   +R+ +       VA   RI YGGSV  AN  EL  + D+DG LVGGASL PE F++++
Sbjct:    6 IAGNWKMNKNPQETQEFLDAIKGKLPDASVVESVIAAPAIDLSTLVAFSKDEQLKTAAENSYFEDEGAFTGETSPKALNEMGVNYVVIGHSERRQYFGETDEDINKKAKAIFNNNMTPIICCGETLEQREAGETNEWVAGQITNALKDLTAEQVAA---SVIAYEPIWAIGTGKTASSDQAQEVCHVIRETVAKLYDQTVADKVRIQYGGSVKPANIAELMGKEDIDGGLVGGASLDPESFLELV 247          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSS (Triosephosphate isomerase OS=Mycobacterium sp. (strain MCS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.761e-34
Identity = 94/246 (38.21%), Postives = 124/246 (50.41%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            MARK  + GNWK N    E    V+KI  +L +                           +      AQ+      GA+TGE+S   L  L   + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ RE+G+ V    EQ +     +++      V+AYEPVWAIGTG+VA  A AQEV   +R  L    S ++AA  R++YGGSVN  N  E+ AQ DVDG LVGGASL  E
Sbjct:    1 MARKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSK (Triosephosphate isomerase OS=Mycobacterium sp. (strain KMS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.761e-34
Identity = 94/246 (38.21%), Postives = 124/246 (50.41%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            MARK  + GNWK N    E    V+KI  +L +                           +      AQ+      GA+TGE+S   L  L   + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ RE+G+ V    EQ +     +++      V+AYEPVWAIGTG+VA  A AQEV   +R  L    S ++AA  R++YGGSVN  N  E+ AQ DVDG LVGGASL  E
Sbjct:    1 MARKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of DY258647 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSJ (Triosephosphate isomerase OS=Mycobacterium sp. (strain JLS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.761e-34
Identity = 94/246 (38.21%), Postives = 124/246 (50.41%), Query Frame = 3
Query:   60 MARKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 779
            MARK  + GNWK N    E    V+KI  +L +                           +      AQ+      GA+TGE+S   L  L   + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ RE+G+ V    EQ +     +++      V+AYEPVWAIGTG+VA  A AQEV   +R  L    S ++AA  R++YGGSVN  N  E+ AQ DVDG LVGGASL  E
Sbjct:    1 MARKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246          
The following BLAST results are available for this feature:
BLAST of DY258647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SYNJA5.942e-3437.75Triosephosphate isomerase OS=Synechococcus sp. (st... [more]
TPIS_STRAW5.942e-3445.16Triosephosphate isomerase OS=Streptomyces avermiti... [more]
TPIS_LACLM5.942e-3436.33Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_BRASB5.942e-3438.02Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_AMOA55.942e-3434.65Triosephosphate isomerase OS=Amoebophilus asiaticu... [more]
TPIS_SYNR37.761e-3436.25Triosephosphate isomerase OS=Synechococcus sp. (st... [more]
TPIS_PEDPA7.761e-3436.73Triosephosphate isomerase OS=Pediococcus pentosace... [more]
TPIS_MYCSS7.761e-3438.21Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCSK7.761e-3438.21Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCSJ7.761e-3438.21Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258647 ID=DY258647; Name=DY258647; organism=Citrus clementina; type=EST; length=1267bp
GATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATTCA
ATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAA
TGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATGAAGCTG
AAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTG
TTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCATGTTGCCGC
TCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTG
CTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCT
GAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGT
TGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGA
CTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAA
ACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGC
TTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTC
AGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTC
AGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAA
TGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTAGATGGATTTT
TGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCT
GCCACAGTGAAAAAGAATTGAAGTAAAAACAACCTACTCGGCTTGCTGAT
GCCTGCAGTTTTCTCTTGTATGCTTTCTGGAACTAGCGTTTGAATTTTTG
GGGTCTGTTAGTTGTACCACGCCCTTTCGAGAAAAAAAGTTAAATTTTCA
AAAATTGTAAAAAACCCTTTCCAATTCCAGGGGAATTTAAAACTAACCAT
TGGGGAATTAAAAAAAGTTTGTTTTTTTCCTTCTTGCAAAAAAAAAAAAA
AAAAAAAAACCAAACTTTTTTTGTAAAAAGTTGGGATAAAAAAAAAAACA
TTGTTTATATAATTTGTGTTCCACCAAAAAGGCCCCACTAACAATAAAAA
AAAAAAATATTTTTTTTGCCCCCTCCCCCGGAGAAATCCCCCCCAATAAA
AGAGAAAGACTTAATAAAATAATGGTGGGCCTAAAATAATGTTGTTTTTT
TCTCGCCGGCGCCCCCC
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