DY258653

Overview
NameDY258653
Unique NameDY258653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1218
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258653_ssr1054 microsatellite DY258653_ssr1054:1054..1065. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1195 contig Ccv1_Contig1195:1..1218. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: AATM_RAT (Aspartate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Got2 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 2.155e-33
Identity = 67/143 (46.85%), Postives = 95/143 (66.43%), Query Frame = 2
Query:  476 REYLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQ-IYIPVPTWSNHHNIWRDAHVTXRTFHYYHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKEK 901
            +EYLP+GG     + + +LA G+NSE +K  R   VQ++SGTGA R+ A F +RF   S+ +++P P+W NH  I+RDA +  + + YY P T G DF+  ++DI   P  S  LLHACAHNPTGVDP  +QWKE++  +K+K
Sbjct:   94 KEYLPIGGLADFCKASAELALGENSEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEMAAVVKKK 236          
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: AAT1_MEDSA (Aspartate aminotransferase 1 OS=Medicago sativa GN=AAT-1 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 2.155e-33
Identity = 64/146 (43.84%), Postives = 96/146 (65.75%), Query Frame = 2
Query:  476 REYLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQIYIPVPTWSNHHNIWRDAHVTXRTFHYYHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKEKGTSP 913
            +EY+P+ G     + + KL +G +S  I++ R+  VQ LSGTG+ R+  +F  + +    IY+P PTW NH  ++  A +T +T+ YY P T+GLDF  L++D+ +AP+GS  LLHACAHNPTGVDP+ +QW++I   I+ K   P
Sbjct:   80 KEYIPIVGLADFNKLSAKLIFGADSPAIQENRVTTVQGLSGTGSLRVGGEFLAKHYHQRIIYLPTPTWGNHTKVFNLAGLTVKTYRYYAPATRGLDFQGLLEDLGSAPSGSVVLLHACAHNPTGVDPTLEQWEQIRQLIRSKSLLP 225          
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: AATM_XENTR (Aspartate aminotransferase, mitochondrial OS=Xenopus tropicalis GN=got2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.814e-33
Identity = 66/147 (44.90%), Postives = 95/147 (64.63%), Query Frame = 2
Query:  476 REYLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQ-IYIPVPTWSNHHNIWRDAHVTXRTFHYYHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKEKGTSP 913
            +EYLP+GG  +    + +LA G+N + I+  R   VQ++SGTG+ R+ A+F +RF+  S+ +Y+P P+W NH  I+RDA +  + + YY P T G DF   +DDI   P  S  L HACAHNPTGVDP ++QWKE++  IK +   P
Sbjct:   91 KEYLPIGGLAEFARASAQLALGENCDAIQSGRFITVQTISGTGSLRVGANFLQRFYKYSRDVYLPKPSWGNHTPIFRDAGLEVKGYRYYDPKTCGFDFTGALDDISKIPEQSIILFHACAHNPTGVDPKQEQWKELAALIKSRRLFP 237          
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: AATM_HORSE (Aspartate aminotransferase, mitochondrial OS=Equus caballus GN=GOT2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.800e-33
Identity = 67/142 (47.18%), Postives = 93/142 (65.49%), Query Frame = 2
Query:  476 REYLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQ-IYIPVPTWSNHHNIWRDAHVTXRTFHYYHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKE 898
            +EYLP+GG  +  + + +LA G+NSE +K  R   VQS+SGTGA R+ A+F +RF   S+ +++P P+W NH  I+RDA +    + YY P T G D    ++DI   P  S  LLHACAHNPTGVDP  +QWKEI+  +K+
Sbjct:   65 KEYLPIGGLAEFCKASAELALGENSEALKSGRYVTVQSISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGLQLHAYRYYDPKTCGFDVTGALEDISKIPQQSIILLHACAHNPTGVDPRPEQWKEIATLVKK 206          
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: AATC_DAUCA (Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 6.269e-33
Identity = 64/146 (43.84%), Postives = 98/146 (67.12%), Query Frame = 2
Query:  476 REYLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQIYIPVPTWSNHHNIWRDAHVTXRTFHYYHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKEKGTSP 913
            +EYLP+ G     + + KL +G +S  I++ R+A VQ LSGTG+ R+  +F  R + +  +YIP PTW NH  I+  A ++ +T+ YY+P T+GLDF  +++D+ +AP G+  LLHACAHNPTGVDP+ +QW++I   ++ K   P
Sbjct:   67 KEYLPIVGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHYHEHTVYIPQPTWGNHPKIFTLAGLSVKTYRYYNPETRGLDFEGMLEDLGSAPLGAIVLLHACAHNPTGVDPTIEQWEQIRQLMRSKSLLP 212          
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: AATM_PIG (Aspartate aminotransferase, mitochondrial OS=Sus scrofa GN=GOT2 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.069e-32
Identity = 65/142 (45.77%), Postives = 95/142 (66.90%), Query Frame = 2
Query:  476 REYLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQ-IYIPVPTWSNHHNIWRDAHVTXRTFHYYHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKE 898
            +EYLP+GG  +  + + +LA G+N+E +K  R   VQ++SGTGA R+ A+F +RF   S+ +++P P+W NH  I+RDA +   ++ YY P T G DF   ++DI   P  S  LLHACAHNPTGVDP  +QWKE++  +K+
Sbjct:   94 KEYLPIGGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLHSYRYYDPKTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATLVKK 235          
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: AATM_CHICK (Aspartate aminotransferase, mitochondrial OS=Gallus gallus GN=GOT2 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.069e-32
Identity = 66/143 (46.15%), Postives = 92/143 (64.34%), Query Frame = 2
Query:  476 REYLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQ-IYIPVPTWSNHHNIWRDAHVTXRTFHYYHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKEK 901
            +EYLP+ G       + +LA G+NSE  K  R   VQ +SGTG+ R+ A+F +RF   S+ +Y+P P+W NH  I+RDA +  + + YY P T  LDF   M+DI   P  S  LLHACAHNPTGVDP ++QWKE++  +K++
Sbjct:   87 KEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR 229          
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: AATC_DICDI (Aspartate aminotransferase, cytoplasmic OS=Dictyostelium discoideum GN=aatB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.824e-32
Identity = 71/171 (41.52%), Postives = 109/171 (63.74%), Query Frame = 2
Query:  413 NFYPPLINIIISVSKL*IFWFREYLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHP-DSQIYIPVPTWSNHHNIWRDAHVTXRTFHYYHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKEKGTSPSLE 922
            N  P ++  +    K  +   +EYLP+ G  +  + + KL YGD +   K+KR+  VQ+LSGTGA R+   F +++ P  + +YI  P+W+NHHNI +++ V    + YY P TKGLDF  +++D++ APNGS F+LH CAHNPTGVDP+ +QW  I+  ++EK   P ++
Sbjct:   79 NGKPYVLKCVFEAEKRLLGAPKEYLPIDGIPEFNKLSAKLLYGD-AMVGKEKRMVTVQALSGTGALRIGIIFIRKYLPAGTVVYISRPSWTNHHNICKESGVQSAEYAYYDPKTKGLDFTGMINDMRAAPNGSVFVLHLCAHNPTGVDPTHEQWNIIADVMREKNHIPFMD 248          
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: AATM_BOVIN (Aspartate aminotransferase, mitochondrial OS=Bos taurus GN=GOT2 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 2.382e-32
Identity = 65/142 (45.77%), Postives = 94/142 (66.20%), Query Frame = 2
Query:  476 REYLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQ-IYIPVPTWSNHHNIWRDAHVTXRTFHYYHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKE 898
            +EYLP+ G  +  + + +LA G+N+E +K  R   VQ++SGTGA R+ A F +RF   S+ +++P PTW NH  I+RDA +  +++ YY P T G DF   ++DI   P  S  LLHACAHNPTGVDP  +QWKE++  +K+
Sbjct:   94 KEYLPIAGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQSYRYYDPKTCGFDFTGAIEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATVVKK 235          
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: AAT2_ARATH (Aspartate aminotransferase, cytoplasmic isozyme 1 OS=Arabidopsis thaliana GN=ASP2 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 4.064e-32
Identity = 65/146 (44.52%), Postives = 93/146 (63.70%), Query Frame = 2
Query:  476 REYLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQIYIPVPTWSNHHNIWRDAHVTXRTFHYYHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKEKGTSP 913
            +EY+P+ G     + + KL  G +S  I + R+  VQ LSGTG+ R+ A+F K  +  S IYIP PTW NH  ++  A ++   F YY P T+GLDF  L++D+  AP+G+  LLHACAHNPTGVDP+ +QW++I   ++ K   P
Sbjct:   67 KEYIPIVGISDFNKLSAKLILGADSPAITESRVTTVQCLSGTGSLRVGAEFLKTHYHQSVIYIPKPTWGNHPKVFNLAGLSVEYFRYYDPATRGLDFKGLLEDLGAAPSGAIVLLHACAHNPTGVDPTSEQWEQIRQLMRSKSLLP 212          
The following BLAST results are available for this feature:
BLAST of DY258653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
AATM_RAT2.155e-3346.85Aspartate aminotransferase, mitochondrial OS=Rattu... [more]
AAT1_MEDSA2.155e-3343.84Aspartate aminotransferase 1 OS=Medicago sativa GN... [more]
AATM_XENTR2.814e-3344.90Aspartate aminotransferase, mitochondrial OS=Xenop... [more]
AATM_HORSE4.800e-3347.18Aspartate aminotransferase, mitochondrial OS=Equus... [more]
AATC_DAUCA6.269e-3343.84Aspartate aminotransferase, cytoplasmic OS=Daucus ... [more]
AATM_PIG1.069e-3245.77Aspartate aminotransferase, mitochondrial OS=Sus s... [more]
AATM_CHICK1.069e-3246.15Aspartate aminotransferase, mitochondrial OS=Gallu... [more]
AATC_DICDI1.824e-3241.52Aspartate aminotransferase, cytoplasmic OS=Dictyos... [more]
AATM_BOVIN2.382e-3245.77Aspartate aminotransferase, mitochondrial OS=Bos t... [more]
AAT2_ARATH4.064e-3244.52Aspartate aminotransferase, cytoplasmic isozyme 1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DE02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258653 ID=DY258653; Name=DY258653; organism=Citrus clementina; type=EST; length=1218bp
CTACTTTGTTAAGTAATTTGTTCTTTACTCCATGTGAATGTCTCAGCTTC
TCCAAAATACAGTTGCCAAGTTCCAGGAATGTAAAATATATCCCTACCAT
ATGCCCCTAGAAGCTGTGATATGTCAAAGGGCAATGAGTACATTTTTGGA
AATTTAATTCTAGGAGATTAAGAACACCTTCAACGAGGGAAATACATTTG
TACACATTTCTCTTCTTTTTGGGCAAACTACACTAGGTGCAAATTACCAC
TGCCCTAATCTCTCCTAGCTTCCTTATAAGTGTGAGTTTGTGTGAGCATA
GAACATCTGTTACTTCTATTCATTACCCCTCCCTTCCTTTTTCTGCCTTT
TCCTGCCCTTCTTGAAGGACGGTTGAGCTGGTTGTATAAGTAATTGGATA
GGGTTGCTTTGAAATTTTTATCCTCCTCTTATTAATATTATAATTTCGGT
TTCCAAATTATGAATATTTTGGTTCAGGGAGTATCTTCCTATGGGAGGGA
GTGTGAAAATGGTGGAGGAAACTCTGAAGCTCGCCTATGGAGATAATTCT
GAGTTCATCAAGGATAAAAGGATAGCAGCTGTACAATCTCTCTCAGGGAC
TGGTGCATGCCGACTTTTTGCAGACTTTCAGAAGCGTTTTCATCCTGATT
CTCAAATCTACATACCTGTCCCAACATGGTCCAACCACCATAACATCTGG
AGAGATGCCCATGTCACTCANAGGACTTTTCATTACTATCACCCTGGGAC
TAAGGGTTTAGATTTTGCAGCACTGATGGATGACATTAAGAATGCACCCA
ATGGTTCATTCTTTCTACTTCATGCTTGTGCTCACAATCCCACTGGAGTG
GATCCTTCAAAGGACCAATGGAAAGAGATCTCATACCAAATAAAGGAAAA
AGGCACTTCCCCATCCTTGGAATGGCGTAACAGGTTTTTGCCCGTGGTGA
TCCGGAAAAAAATGCCCAGGCCATCCCAATTTTTTCCCAAGGAGGGCCCC
TAATTTGGATTAACCCAGTCCAAATGCAAAAAAAATAGGAATCCTATGGC
CCAAAAGAAAGAAAGCCTTTATGGTCATTGTAAAAAAAAAAAAAACAAAG
CAGGGGGTTGTTAAAAAATCCAATTTTGCACCCACCTTTGCCCGGGCCCC
CGGTAACACAAAATCCCCCCCTGGTTTCTGGGGGGCCCCTCCATAAACTC
CCCCCCCCCCCCTCTTGG
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