DY258653

Overview
NameDY258653
Unique NameDY258653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1218
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: TYRB_SALTY (Aromatic-amino-acid aminotransferase OS=Salmonella typhimurium GN=tyrB PE=3 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 6.503e-22
Identity = 51/147 (34.69%), Postives = 78/147 (53.06%), Query Frame = 2
Query:  482 YLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQIYIPVPTWSNHHNIWRDAHVTXRTFHYYHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKEKGTSPSLE 922
            YLPM G          L +G +   ++ +R+A +Q+L G+GA ++ ADF KR+ PD+ +++  PTW NH  I+  A     T+ +Y   T G+ F  L+  +   P  S  LLH C HNPTG D +  QW  +   +K +   P L+
Sbjct:   66 YLPMEGLNTYRHTIAPLLFGADHPVLQQQRVATIQTLGGSGALKVGADFLKRYFPDAGVWVSDPTWENHIAIFAGAGFEVSTYPWYDDATNGIRFNDLLATLNTLPARSIVLLHPCCHNPTGADLTPSQWDAVIEIVKARDLIPFLD 212          
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: TYRB_KLEPN (Tyrosine aminotransferase OS=Klebsiella pneumoniae GN=tyrB PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.215e-21
Identity = 50/147 (34.01%), Postives = 78/147 (53.06%), Query Frame = 2
Query:  482 YLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQIYIPVPTWSNHHNIWRDAHVTXRTFHYYHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKEKGTSPSLE 922
            YLPM G     +    L +G     +K  RIA++Q++ G+GA ++ ADF KR+ P+S +++  PTW NH  I+  A     T+ ++   T G+ F  L+  ++  P     LLH C HNPTG D +  QW  +   +K +   P L+
Sbjct:   66 YLPMEGFSGYRQAIAPLLFGAEHTALKQNRIASIQTVGGSGALKVGADFLKRYFPESHVWVSDPTWENHIAIFEGAGFEVSTYPWFDKATNGVRFENLLAMLQTLPARDIVLLHPCCHNPTGADLTPAQWDRVVEVLKARQLIPFLD 212          
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: AATC_CAEEL (Probable aspartate aminotransferase, cytoplasmic OS=Caenorhabditis elegans GN=T01C8.5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.092e-20
Identity = 52/142 (36.62%), Postives = 78/142 (54.93%), Query Frame = 2
Query:  479 EYLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQIYIPVPTWSNHHNIWRDA-HVTXRTFHYYHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKEK 901
            EYLP+ G     +   +L  G  S  IK++R   VQ LSGTGA R  A+F         +Y+  PTW NH  +++ A   T   + ++    K +     + D+++AP  S  +LH CAHNPTG+DP+++QWK ++  IK K
Sbjct:   67 EYLPVLGHEGFRKAATELVLGAESPAIKEERSFGVQCLSGTGALRAGAEFLASVCNMKTVYVSNPTWGNHKLVFKKAGFTTVADYTFWDYDNKRVHIEKFLSDLESAPEKSVIILHGCAHNPTGMDPTQEQWKLVAEVIKRK 208          
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: TYRB_PARDE (Aromatic-amino-acid aminotransferase OS=Paracoccus denitrificans GN=tyrB PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.148e-18
Identity = 45/149 (30.20%), Postives = 79/149 (53.02%), Query Frame = 2
Query:  476 REYLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQIYIPVPTWSNHHNIWRDAHVTXRTFHYYHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKEKGTSPSLE 922
            + Y  + G  +  +   +L  GD    +K +  A + ++ GTGA R   +  +  +PD ++++  PTW NH +I     +  +T+ Y+   T+G+DF  +  D+  A  G   LLH C HNPTG + + DQW EI+  +++ G  P ++
Sbjct:   63 KTYAGLSGEPEFQKAMGELILGDG---LKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLID 208          
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: AATM_YEAST (Aspartate aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=AAT1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 4.083e-16
Identity = 54/160 (33.75%), Postives = 83/160 (51.88%), Query Frame = 2
Query:  482 YLPMGGSVKMVEETLKLAYGDNSE-----FIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQIYIPVPTWSNHHNIWRD-AHVTXRTFHYYHPGTKGLD-------FAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKEKGTSPSLE 922
            YLP+ GS +  E  +K  + ++       ++   RI+ VQ+LSGTGA  + A F   F     I+IP P+W+NH NI+++        + YY  G   +D         A  +  +N  N    +LHAC HNPTG+DP+K+QW++I   I E    P ++
Sbjct:   86 YLPITGSKEFQENVMKFLFKESCPQFGPFYLAHDRISFVQTLSGTGALAVAAKFLALFI-SRDIWIPDPSWANHKNIFQNNGFENIYRYSYYKDGQIDIDGWIEQLKTFAYNNQQENNKNPPCIILHACCHNPTGLDPTKEQWEKIIDTIYELKMVPIVD 244          
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: PHHC_PSEAE (Aromatic-amino-acid aminotransferase OS=Pseudomonas aeruginosa GN=phhC PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 2.646e-15
Identity = 47/151 (31.13%), Postives = 72/151 (47.68%), Query Frame = 2
Query:  476 REYLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQIYIPVPTWSNHHNIWRDAHVTXRTFHY-YHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKEKGTSPSLEW 925
            + Y+   G         +LA G  S  + ++R  A Q+  GTGA RL  DF     P   I++  PTW  H  ++  A +  +  HY Y      LD  A++  ++  P G   LLHAC HNPTG D S D W+ +   ++ +   P +++
Sbjct:   65 KSYVGGHGDALFAARLAELALGAASPLLLEQRADATQTPGGTGALRLAGDFIAHCLPGRGIWLSDPTWPIHETLFAAAGL--KVSHYPYVSADNRLDVEAMLAGLERIPQGDVVLLHACCHNPTGFDLSHDDWRRVLDVVRRRELLPLIDF 213          
BLAST of DY258653 vs. ExPASy Swiss-Prot
Match: ATTY_RHIME (Tyrosine aminotransferase OS=Rhizobium meliloti GN=tatA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.452e-13
Identity = 46/149 (30.87%), Postives = 79/149 (53.02%), Query Frame = 2
Query:  476 REYLPMGGSVKMVEETLKLAYGDNSEFIKDKRIAAVQSLSGTGACRLFADFQKRFHPDSQIYIPVPTWSNHHNIWRDAHVTXRTFHYYHPGTKGLDFAALMDDIKNAPNGSFFLLHACAHNPTGVDPSKDQWKEISYQIKEKGTSPSLE 922
            + Y+   G +  ++   +L  GD    I+   +A VQ+  G+GA RL AD   R      I++ +P+W NH  I++ A +   T+ ++   ++ + F  L+  ++ A +G   LLHA  HNPTG   S+ QW EI+  + E+G  P ++
Sbjct:   63 KAYIGPEGDLVFLDRLWELVGGDT---IERSHVAGVQTPGGSGALRLAADLIARMGGRG-IWLGLPSWPNHAPIFKAAGLDIATYDFFDIPSQSVIFDNLVSALEGAASGDAVLLHASCHNPTGGVLSEAQWMEIAALVAERGLLPLVD 207          
The following BLAST results are available for this feature:
BLAST of DY258653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
TYRB_SALTY6.503e-2234.69Aromatic-amino-acid aminotransferase OS=Salmonella... [more]
TYRB_KLEPN4.215e-2134.01Tyrosine aminotransferase OS=Klebsiella pneumoniae... [more]
AATC_CAEEL2.092e-2036.62Probable aspartate aminotransferase, cytoplasmic O... [more]
TYRB_PARDE1.148e-1830.20Aromatic-amino-acid aminotransferase OS=Paracoccus... [more]
AATM_YEAST4.083e-1633.75Aspartate aminotransferase, mitochondrial OS=Sacch... [more]
PHHC_PSEAE2.646e-1531.13Aromatic-amino-acid aminotransferase OS=Pseudomona... [more]
ATTY_RHIME1.452e-1330.87Tyrosine aminotransferase OS=Rhizobium meliloti GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DE02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258653 ID=DY258653; Name=DY258653; organism=Citrus clementina; type=EST; length=1218bp
CTACTTTGTTAAGTAATTTGTTCTTTACTCCATGTGAATGTCTCAGCTTC
TCCAAAATACAGTTGCCAAGTTCCAGGAATGTAAAATATATCCCTACCAT
ATGCCCCTAGAAGCTGTGATATGTCAAAGGGCAATGAGTACATTTTTGGA
AATTTAATTCTAGGAGATTAAGAACACCTTCAACGAGGGAAATACATTTG
TACACATTTCTCTTCTTTTTGGGCAAACTACACTAGGTGCAAATTACCAC
TGCCCTAATCTCTCCTAGCTTCCTTATAAGTGTGAGTTTGTGTGAGCATA
GAACATCTGTTACTTCTATTCATTACCCCTCCCTTCCTTTTTCTGCCTTT
TCCTGCCCTTCTTGAAGGACGGTTGAGCTGGTTGTATAAGTAATTGGATA
GGGTTGCTTTGAAATTTTTATCCTCCTCTTATTAATATTATAATTTCGGT
TTCCAAATTATGAATATTTTGGTTCAGGGAGTATCTTCCTATGGGAGGGA
GTGTGAAAATGGTGGAGGAAACTCTGAAGCTCGCCTATGGAGATAATTCT
GAGTTCATCAAGGATAAAAGGATAGCAGCTGTACAATCTCTCTCAGGGAC
TGGTGCATGCCGACTTTTTGCAGACTTTCAGAAGCGTTTTCATCCTGATT
CTCAAATCTACATACCTGTCCCAACATGGTCCAACCACCATAACATCTGG
AGAGATGCCCATGTCACTCANAGGACTTTTCATTACTATCACCCTGGGAC
TAAGGGTTTAGATTTTGCAGCACTGATGGATGACATTAAGAATGCACCCA
ATGGTTCATTCTTTCTACTTCATGCTTGTGCTCACAATCCCACTGGAGTG
GATCCTTCAAAGGACCAATGGAAAGAGATCTCATACCAAATAAAGGAAAA
AGGCACTTCCCCATCCTTGGAATGGCGTAACAGGTTTTTGCCCGTGGTGA
TCCGGAAAAAAATGCCCAGGCCATCCCAATTTTTTCCCAAGGAGGGCCCC
TAATTTGGATTAACCCAGTCCAAATGCAAAAAAAATAGGAATCCTATGGC
CCAAAAGAAAGAAAGCCTTTATGGTCATTGTAAAAAAAAAAAAAACAAAG
CAGGGGGTTGTTAAAAAATCCAATTTTGCACCCACCTTTGCCCGGGCCCC
CGGTAACACAAAATCCCCCCCTGGTTTCTGGGGGGCCCCTCCATAAACTC
CCCCCCCCCCCCTCTTGG
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