DY258669

Overview
NameDY258669
Unique NameDY258669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1234
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14555 contig Ccv1_Contig14555:9..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_ALKMQ (6,7-dimethyl-8-ribityllumazine synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=ribH PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 8.601e-38
Identity = 71/142 (50.00%), Postives = 106/142 (74.65%), Query Frame = 3
Query:  228 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            ++G +F ++V RFNE +   LL GA++  K++ V EENI++ WVPG+FE+ ++A+++ KS KY+ V+C+GAV+RG T H+D V++    GV S  + + VP IFGVLT D ++QA+ RAG K+GNKG EAA+TAIEMA+L +
Sbjct:   10 SKGQKFGIIVGRFNEFIGGKLLSGAIDALKRHGVDEENIEIAWVPGAFEMPLIAKKMAKSQKYDGVICLGAVIRGATPHFDYVSSEVTKGVASVSLETEVPVIFGVLTTDTIEQAIERAGTKAGNKGFEAAVTAIEMANLLK 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_BACC1 (6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus cereus (strain ATCC 10987) GN=ribH PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.123e-37
Identity = 77/148 (52.03%), Postives = 105/148 (70.95%), Query Frame = 3
Query:  204 HLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            HL G      GL+  +VV RFNE +T  LL GAL+  K++ V+E +IDV WVPG+FEI ++A+++  SGKY+AV+ +G V+RG TTHYD V N  A GV S  + + +P IFGVLT + ++QA+ RAG K+GNKG E+A+ AIEMA L
Sbjct:    6 HLVG-----TGLKVGVVVGRFNEFITSKLLGGALDGLKRHGVEEADIDVAWVPGAFEIPLIAKKMANSGKYDAVITLGTVIRGATTHYDYVCNEVAKGVASLSLQTDIPVIFGVLTTETIEQAIERAGTKAGNKGYESAVAAIEMAHL 148          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_EUBR3 (6,7-dimethyl-8-ribityllumazine synthase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=ribH PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.467e-37
Identity = 71/139 (51.08%), Postives = 104/139 (74.82%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            +G++  +VVARFNE +T  LL GA +   ++ V EENIDV WVPG+FEI ++A+++ KS KY+A++C+GAV+RG T+HYD V N  + G+ S  + S +P +FGV+T +N++QA+ RAG K+GNKG + AL AIEM +L
Sbjct:   11 DGIKVGIVVARFNEFITSKLLGGAKDGLVRHDVPEENIDVAWVPGAFEIPLIAKKMAKSRKYDAIICLGAVIRGATSHYDYVCNEVSKGIASVSLESEIPVMFGVVTTENIEQAIERAGTKAGNKGYDCALGAIEMINL 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOCE (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=ribH PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.467e-37
Identity = 73/138 (52.90%), Postives = 101/138 (73.19%), Query Frame = 3
Query:  234 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            GL+F +VV RFNE ++  LL GA++   ++   E +I V WVPG+FEI + AQ++  SGKY AV+C+GAV+RG T H+D VA   + GV    +++GVP IFGVLT D ++QA+ RAG K+GNKG +AA+TAIEMA+L
Sbjct:   14 GLKFGIVVGRFNEFISSKLLSGAIDGLVRHGADESDITVSWVPGAFEIPIAAQKMANSGKYAAVICVGAVIRGSTPHFDYVAGEVSKGVARISLDTGVPVIFGVLTTDTIEQAIERAGTKAGNKGYDAAVTAIEMANL 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_BACCR (6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ribH PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.467e-37
Identity = 77/148 (52.03%), Postives = 104/148 (70.27%), Query Frame = 3
Query:  204 HLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            HL G      GL+  +VV RFNE +T  LL GAL+  K++ V+E +IDV WVPG+FEI ++A+++  SGKY+AV+ +G V+RG TTHYD V N  A GV S  +   +P IFGVLT + ++QA+ RAG K+GNKG E+A+ AIEMA L
Sbjct:    6 HLVG-----TGLKVGVVVGRFNEFITSKLLGGALDGLKRHGVEENDIDVAWVPGAFEIPLIAKKMASSGKYDAVITLGTVIRGATTHYDYVCNEVAKGVASLSLQMDIPVIFGVLTTETIEQAIERAGTKAGNKGYESAVAAIEMAHL 148          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_BACC4 (6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus cereus (strain B4264) GN=ribH PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.467e-37
Identity = 77/148 (52.03%), Postives = 104/148 (70.27%), Query Frame = 3
Query:  204 HLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            HL G      GL+  +VV RFNE +T  LL GAL+  K++ V+E +IDV WVPG+FEI ++A+++  SGKY+AV+ +G V+RG TTHYD V N  A GV S  +   +P IFGVLT + ++QA+ RAG K+GNKG E+A+ AIEMA L
Sbjct:    6 HLVG-----TGLKVGVVVGRFNEFITSKLLGGALDGLKRHGVEESDIDVAWVPGAFEIPLIAKKMASSGKYDAVITLGTVIRGATTHYDYVCNEVAKGVASLSLQMDIPVIFGVLTTETIEQAIERAGTKAGNKGYESAVAAIEMAHL 148          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_BACC2 (6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus cereus (strain G9842) GN=ribH PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.467e-37
Identity = 77/148 (52.03%), Postives = 104/148 (70.27%), Query Frame = 3
Query:  204 HLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            HL G      GL+  +VV RFNE +T  LL GAL+  K++ V+E +IDV WVPG+FEI ++A+++  SGKY+AV+ +G V+RG TTHYD V N  A GV S  +   +P IFGVLT + ++QA+ RAG K+GNKG E+A+ AIEMA L
Sbjct:    6 HLVG-----TGLKVGVVVGRFNEFITSKLLGGALDGLKRHGVEENDIDVAWVPGAFEIPLIAKKMASSGKYDAVITLGTVIRGATTHYDYVCNEVAKGVASLSLQMDIPVIFGVLTTETIEQAIERAGTKAGNKGYESAVAAIEMAHL 148          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_KOSOT (6,7-dimethyl-8-ribityllumazine synthase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=ribH PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.916e-37
Identity = 71/139 (51.08%), Postives = 104/139 (74.82%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            EGL+ A+V++RFN  VTK LL+GAL+  K++ VK+ENIDV+WVPG+ EI  + + +    K++A++ +GAV+RG+T H+D VAN  + G+ +  +   VP  FG++T D ++QALNRAG KSGNKG EAA+ A+EMA+L
Sbjct:   11 EGLKIAIVISRFNSAVTKELLDGALDALKRHEVKDENIDVIWVPGAMEIPHITRSIALKKKHDAIIALGAVIRGETYHFDVVANEVSKGIAAINLEVDVPVSFGIITSDTVEQALNRAGIKSGNKGFEAAMVALEMANL 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOB6 (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=ribH PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.916e-37
Identity = 69/141 (48.94%), Postives = 107/141 (75.89%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            EGL+  ++V+RFNE +T  LL G+++  K++  KE+NI+V WVPG+FEI V+A+++   GKY+AV+C+GAV+RG T H+D V++  + GV    ++  VP IFGVLT + ++QA+ RAG K+GNKG +AA++AIEM++L +
Sbjct:   11 EGLKVGIIVSRFNEFITSKLLAGSIDCLKRHGAKEDNIEVCWVPGAFEIPVIAKKMASKGKYDAVICLGAVIRGATPHFDYVSSEVSKGVAHVSLDKEVPVIFGVLTTNTIEQAIERAGTKAGNKGYDAAMSAIEMSNLMK 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_STRZT (6,7-dimethyl-8-ribityllumazine synthase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=ribH PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 5.575e-37
Identity = 69/137 (50.36%), Postives = 103/137 (75.18%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            ++  +VVARFNE +T  LL GAL+  K+ +V E++I+V WVPG+FEI ++A ++ KS KY+A++C+GAV+RG+T+HYD V +  + G+    +NS +P +FGVLT D ++QA+ RAG K+GNKG+E A  AIEM +L
Sbjct:   13 IKIGIVVARFNEFITSKLLSGALDNLKRENVNEKDIEVAWVPGAFEIPLIASKMAKSKKYDAIICLGAVIRGNTSHYDYVCSEVSKGIAQISLNSEIPVMFGVLTTDTIEQAIERAGTKAGNKGSECAQGAIEMVNL 149          
The following BLAST results are available for this feature:
BLAST of DY258669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RISB_ALKMQ8.601e-3850.006,7-dimethyl-8-ribityllumazine synthase OS=Alkalip... [more]
RISB_BACC11.123e-3752.036,7-dimethyl-8-ribityllumazine synthase OS=Bacillu... [more]
RISB_EUBR31.467e-3751.086,7-dimethyl-8-ribityllumazine synthase OS=Eubacte... [more]
RISB_CLOCE1.467e-3752.906,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_BACCR1.467e-3752.036,7-dimethyl-8-ribityllumazine synthase OS=Bacillu... [more]
RISB_BACC41.467e-3752.036,7-dimethyl-8-ribityllumazine synthase OS=Bacillu... [more]
RISB_BACC21.467e-3752.036,7-dimethyl-8-ribityllumazine synthase OS=Bacillu... [more]
RISB_KOSOT1.916e-3751.086,7-dimethyl-8-ribityllumazine synthase OS=Kosmoto... [more]
RISB_CLOB61.916e-3748.946,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_STRZT5.575e-3750.366,7-dimethyl-8-ribityllumazine synthase OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258669 ID=DY258669; Name=DY258669; organism=Citrus clementina; type=EST; length=1234bp
TCAGAACAAAAATGGCTTTAAACCTCAAAACAACAATTCATCACTCTCCT
CTCGCATCATCATCTCGTCAATTCATTAATGGGTTTTCTCCAAAACCAAC
TTCTATGTCCTTTTCACATTCTTCTTCACTCAAAGGATTTGGAACCCAGA
TTGCGATTGAGAGGAAGGAACGTTTATCGTTTGTACAAACGGAAGCTGTG
AGGCATTTGACTGGATTCCTTACAAAAAATGAGGGGCTCCGTTTTGCTTT
GGTTGTTGCACGGTTTAATGAGCTTGTGACAAAACTACTGTTAGAGGGAG
CTTTGGAGACCTTCAAGAAGTATTCAGTTAAAGAAGAAAACATTGATGTT
GTGTGGGTTCCTGGTAGTTTTGAAATTGGTGTTGTTGCACAACAGCTAGG
GAAGTCTGGGAAGTATAATGCAGTTTTGTGTATTGGTGCCGTGGTTAGAG
GTGATACTACTCACTATGATGCTGTAGCTAATTCTGCTGCATCCGGAGTT
CTTTCAGCTGGCATGAATTCAGGTGTTCCATGCATATTTGGTGTCCTGAC
TTGCGATAACATGGACCAGGCTTTGAATCGAGCTGGTGGTAAATCTGGGA
ATAAGGGTGCTGAGGCAGCTTTGACTGCTATTGAAATGGCATCTTTATTT
GAGCACCACCTGAAGTAGTGGTTTCACCAAGAAGAGTTGGACAGAGTCCT
TTTTCCGCTCATATTTTCTTTTTGAGAAAGTGGCCTTTTGTTGTAGTTTC
ATGATACCTGAAGCCTTTGTATGGACAGTTTTGGGATCTGCAAAAGGTTA
GCCTTAGCATTCCAAAATAAGATNAGCAAATTGTTCACTGCCTTCATACT
GGGAAACTTTTTCCTGCGCGTCACCCAGATACTGAAAAAACATTCCGTAA
TGTTCTGAATCAAAAACAATCTGGAATTCTGTATGCCTTCCCAAATGTTT
TTTCTAAATGAAAATAATCAAAAAAAAAGGCATTTGCATCCATGAATTGA
GGGCAAAATTGGAGGGAATATATGGGTGGTTTTTTGAAAAAACGAAAAAG
GGGGGACCTTTGCAACCAACCCTAATTTCCCTGGGTTTTGGGGAAAAAAA
ATTTGGATTTCAGGGGGGAAAAAAAAAAAAAAAGAAAAAGGGGGTATGGG
GTAAAGGTCTTTTGTCTTTGGAAATTTGTCCTAAATTTTTGCCTTATTTT
AGGTAAAATATTTTTCTTTTTTTTTTTTTTTTTA
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