DY258673

Overview
NameDY258673
Unique NameDY258673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1160
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_RICBR (ATP synthase subunit beta OS=Rickettsia bellii (strain RML369-C) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.266e-19
Identity = 73/239 (30.54%), Postives = 113/239 (47.28%), Query Frame = 1
Query:   49 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM--GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            L+TG +V+D L P   GG   + G  G GKTV+   L      ++    V+ G GER   GN++   ++D   + +      EE    +  LV    N P  AR     TG+T+AE FRDM  G +V    D+  R+ +A  E+S  L  +P+  GY   LA  +    ER    K        GS+T V A+  P  D +DP  + + + +     L +++A+   +P+V+ L S S+
Sbjct:  130 LVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREGNDLYHEMIDSGVINL------EEPEKSKVALVYGQMNEPPGARARVALTGLTVAESFRDMNEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGELQERITSTK-------HGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRQIAELGIYPAVDPLDSTSQ 355          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_NITOC (ATP synthase subunit beta OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.266e-19
Identity = 74/246 (30.08%), Postives = 115/246 (46.75%), Query Frame = 1
Query:   16 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            P   +L+  T LL TG +V+D + P   GG   + G  G GKTV    L +     +S   V+ G GER  E  +   +           ++  V+ + +LV    N P   R     TG+T+AE+FR+ G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T + AV  P  D +DP  + T + +     L +++A+   +P+V+ L S S+
Sbjct:  113 PAYEELSPATELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIATEHSGYSVFAGVGERTREGNDFYHEM----------KDSQVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEFFREEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAELGIYPAVDPLDSTSR 341          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_LEPTE (ATP synthase subunit beta, chloroplastic OS=Leptosira terrestris GN=atpB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.266e-19
Identity = 77/263 (29.28%), Postives = 119/263 (45.25%), Query Frame = 1
Query:   13 RPVSSKLAADTPLL---TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVN-----------WLISYSKYQ 747
            RP  + +  DT L    TG +V+D L P   GG   + G  G GKTV+   L      ++    V+ G GER  E  ++ M+  +  +   +   ES   +  LV    N P  AR     T +T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA+ +    ER    K        GS+T + AV  P  D +DP  + T + +     L + LA +  +P+V+           W++S   Y+
Sbjct:  124 RPAPAFVDLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESKVINAENLSES---KVALVYGQMNEPPGARMRVALTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLASEMGGLQERITSTK-------DGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPWIVSKEHYE 376          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_HELMI (ATP synthase subunit beta OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.266e-19
Identity = 73/247 (29.55%), Postives = 112/247 (45.34%), Query Frame = 1
Query:   16 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            P    L   T +L TG +V+D L P   GG   + G  G GKTV+ Q L        S   V+ G GER  E  ++  +F          +E  ++K   +V    N P  AR     +G+ +AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   L+  +    ER    K        GS+T V A+  P  D +DP  +   + +     L + +A+   +P+V+ L S S+
Sbjct:  124 PTFENLEPSTEVLETGIKVIDLLAPYAKGGKVGLFGGAGVGKTVLIQELINNIAMEYSGYSVFAGVGERTREGNDLYNEF----------KESGILKNVAMVFGQMNEPPGARMRVALSGLVMAEYFRDVQNQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGQLQERITSTK-------NGSITSVQAIYVPADDLTDPAPATAFAHLDATTVLSRAIAELGIYPAVDPLDSTSR 353          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_DICDI (ATP synthase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=atp5b PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.266e-19
Identity = 75/249 (30.12%), Postives = 115/249 (46.18%), Query Frame = 1
Query:    4 RTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYS 738
            R P P +    + + L TG +V+D L P   GG   + G  G GKTV+ Q L      ++    V+ G GER  E  ++  +  +  +     ++E    +  LV    N P  AR     TG+T+AEYFRD  G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  +    ER    K        GS+T V AV  P  D +DP  + T + +     L + +++   +P V+ L S S
Sbjct:  218 RAPPPFADLAPSASILETGIKVIDLLAPYSRGGKIGLFGGAGVGKTVLIQELINNIAKAHGGFSVFTGVGERTREGNDLYHEMVEAGVI----KKEGPGSKVALVFGQMNEPPGARARVTLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQAGSEMSALLGRIPSAVGYQPTLATDMGCMQERIATTK-------KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRAISELGIYPCVDPLDSTS 455          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_CLOPH (ATP synthase subunit beta OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.266e-19
Identity = 77/250 (30.80%), Postives = 116/250 (46.40%), Query Frame = 1
Query:   16 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            P   + +  T +L TG +V+D L P   GG   + G  G GKTV+ Q L       +    V+ G GER   GN++   ++D               V+ +TT+V    N P  AR     TG+T+AEYFRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   L   + +  ER    K        GS+T V AV  P  D +DP  + T + +     L + + +   +P+V+ L S S+
Sbjct:  125 PAFEEQSTQTEILETGIKVVDLLCPYQKGGKIGLFGGAGVGKTVLIQELITNIATEHGGYSVFTGVGERTREGNDLYYEMID-------------SGVINKTTMVFGQMNEPPGARMRVGLTGLTMAEYFRDKSGKDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLQTEMGALQERITSTK-------NGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIVELGIYPAVDPLESTSR 354          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_ANAMM (ATP synthase subunit beta OS=Anaplasma marginale (strain St. Maries) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.266e-19
Identity = 73/250 (29.20%), Postives = 121/250 (48.40%), Query Frame = 1
Query:    4 RTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            + P     ++AA+  L+TG +V+D L P + GG   + G  G GKTV+   L      ++    V+ G GER  E  ++  +  +  +     R+E    +  LV    N P  AR     T +T+AEYFRD  G +V    D+  R+ ++  E+S  L  +P+  GY   LAA + +  ER            TGS+T V A+  P  D +DP  +A+ + +     L +++++   +P+V+ L S S+
Sbjct:  130 KAPSLSEQRVAAEV-LVTGIKVVDLLAPYLKGGKVGLFGGAGVGKTVLIMELISNVARAHKGFSVFAGVGERTREGNDLYREMVESGVI---SRDEPSKSQAVLVYGQMNEPPGARMRVALTALTMAEYFRDSEGQDVLFFVDNVFRFTQSGSEVSALLGRIPSAVGYQPTLAAEMGAMQERITST-------NTGSITSVQAIYVPADDLTDPAPAASFAHLDSTTVLSRQISELGIYPAVDPLESTSQ 368          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_ALKOO (ATP synthase subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.266e-19
Identity = 77/255 (30.20%), Postives = 118/255 (46.27%), Query Frame = 1
Query:    1 VRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            +  P P     A  T +L TG +V+D + P + GG   + G  G GKTV+   L       +    V+ G GER   GN++   ++             E  V+ +T LV    N P  AR     TG+T+AE+FRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  + +  ER           R GS+T V AV  P  D +DP  + T + +     L +++ +   +P+V+ L S S+
Sbjct:  113 IHRPAPSFEDQATSTEILETGIKVVDLIAPYLKGGKIGLFGGAGVGKTVLIMELINNIAKEHGGLSVFSGVGERTREGNDLYNEMI-------------ESGVIDKTALVYGQMNEPPGARMRVGLTGLTMAEHFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITST-------RKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIVELGIYPAVDPLDSNSR 347          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_ALKMQ (ATP synthase subunit beta OS=Alkaliphilus metalliredigens (strain QYMF) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.266e-19
Identity = 73/236 (30.93%), Postives = 112/236 (47.46%), Query Frame = 1
Query:   55 TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            TG +V+D + P   GG   + G  G GKTV+   L       +    V+ G GER   GN++   ++             E  V+ +T+LV    N P  AR     TG+T+AEYFRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T V AV  P  D +DP  + T + +     L +++++   +P+V+ L S S+
Sbjct:  132 TGIKVVDLIAPYARGGKVGLFGGAGVGKTVLIMELINNIAKEHGGLSVFAGVGERTREGNDLYHEMI-------------ESGVIDKTSLVYGQMNEPPGARMRVGLTGLTMAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTK-------KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSNSR 347          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_SOLUE (ATP synthase subunit beta OS=Solibacter usitatus (strain Ellin6076) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.653e-19
Identity = 70/233 (30.04%), Postives = 110/233 (47.21%), Query Frame = 1
Query:   55 TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY-NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            TG +V+D + P + GG   + G  G GKTVI Q L       +    V+ G GER  E  ++ ++F +  +  P    +S   +  L+      P  AR     TG+T+AEYFRD  + +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GS+T V A+  P  D++DP  +   + +     L + +A    +P+V+ L S S+
Sbjct:  140 TGIKVIDLIEPYLRGGKIGLFGGAGVGKTVIIQELINNLAMKHGGVSVFAGVGERTREGNDLWLEFQESGVIDPHDYTKS---KCALIYGQMTEPPGARLRVGLTGLTVAEYFRDEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPNLATEMGELQERITSTK-------NGSITSVQAIYVPADDYTDPAPATAFAHLDATTNLSRDIAALGIYPAVDPLASTSR 362          
The following BLAST results are available for this feature:
BLAST of DY258673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RICBR1.266e-1930.54ATP synthase subunit beta OS=Rickettsia bellii (st... [more]
ATPB_NITOC1.266e-1930.08ATP synthase subunit beta OS=Nitrosococcus oceani ... [more]
ATPB_LEPTE1.266e-1929.28ATP synthase subunit beta, chloroplastic OS=Leptos... [more]
ATPB_HELMI1.266e-1929.55ATP synthase subunit beta OS=Heliobacterium modest... [more]
ATPB_DICDI1.266e-1930.12ATP synthase subunit beta, mitochondrial OS=Dictyo... [more]
ATPB_CLOPH1.266e-1930.80ATP synthase subunit beta OS=Clostridium phytoferm... [more]
ATPB_ANAMM1.266e-1929.20ATP synthase subunit beta OS=Anaplasma marginale (... [more]
ATPB_ALKOO1.266e-1930.20ATP synthase subunit beta OS=Alkaliphilus oremland... [more]
ATPB_ALKMQ1.266e-1930.93ATP synthase subunit beta OS=Alkaliphilus metallir... [more]
ATPB_SOLUE1.653e-1930.04ATP synthase subunit beta OS=Solibacter usitatus (... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DH11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258673 ID=DY258673; Name=DY258673; organism=Citrus clementina; type=EST; length=1160bp
GTACGTACCCCAAGGCCTGTTTCATCAAAGCTTGCTGCTGATACTCCACT
GCTTACAGGACAGCGTGTTCTTGATGCCCTTTTCCCTTCAGTTCTTGGTG
GGACTTGTGCTATTCCTGGAGCATTTGGTTGTGGCAAAACTGTTATTAGT
CAAGCTCTCTCTAAGTACTCCAATTCTGATACTGTTGTTTATGTTGGTTG
TGGGGAGCGAGGAAATGAAATGGCAGAGGTGCTTATGGATTTTCCTCAAT
TGACAATGACATTGCCTGATGGCCGTGAAGAATCTGTCATGAAGCGTACA
ACACTTGTGGCCAACACTTCTAACATGCCTGTGGCTGCTCGTGAGGCTTC
GATTTATACAGGAATCACCATAGCTGAATATTTCAGAGATATGGGGTACA
ATGTTAGCATGATGGCAGATTCAACTTCTCGTTGGGCAGAAGCGTTGCGT
GAAATTTCAGGACGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTGC
TTACCTGGCTGCACGTTTGGCCTCATTTTATGAACGTGCTGGGAAAGTTA
AATGTCTTGGTGGACCAGAACGTACTGGTAGTGTCACAATTGTTGGTGCA
GTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTGTAACATCTGCCACCCT
CAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAGAAACTTGCGCAGAGAA
AGCATTTTCCTTCTGTAAACTGGCTTATTTCTTACTCGAAGTATCAACAG
CATTAGAGTCTTTCTATGAGCAATTTGATCCGGATTTTATTAACATCAAG
ACAAAGGCTAGAGAGGTGCTGCAGAAAGAAGATGAACTGAATGAAAATGT
GCCACTTGTCCGAAAGGATGCTTTGGCTGAAGGAAAATAAAATACGCTAG
AGACTGCTAAGCTTTTGAGGGAGGACTATCTTGCTCAGAACGCTTTACTC
CATATGACAGTTCTGCCCTTTCCTACAGTCTGTTTGGATAAAGCCTAACA
TTATCCCTTTCTATAACTTGGCCCAATAGGCCGAAAAAAAAGGGAACTGG
GTAAGGAAGGGGCAAAAAAAAAACTAAACCCCCCTTTCAACCACCTCCGC
GGGGGGAAAATTATATTTTTAACAAAAAAAAAATTCCCAAAAAAATTTTA
GAAAAACCCA
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