DY258677

Overview
NameDY258677
Unique NameDY258677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:517..1398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 3.170e-83
Identity = 148/237 (62.45%), Postives = 187/237 (78.90%), Query Frame = 2
Query:    2 KIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 712
            +IKKY SVVRVLAHTQIRK   L QKKAHLMEIQVNGG++A+KV++A   FEK + + + F+++EMID+IGVT+GKG EG   RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y++G  G ++    T+FD TEK ITPMGGF  YG+V++D++M+ G   GP KRV+TLR+SLL  TSR ALE + +K+IDT+SKFGHGRFQT  E +++ G +K
Sbjct:  150 RIKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 3.170e-83
Identity = 148/237 (62.45%), Postives = 187/237 (78.90%), Query Frame = 2
Query:    2 KIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 712
            +IKKY SVVRVLAHTQIRK   L QKKAHLMEIQVNGG++A+KV++A   FEK + + + F+++EMID+IGVT+GKG EG   RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y++G  G ++    T+FD TEK ITPMGGF  YG+V++D++M+ G   GP KRV+TLR+SLL  TSR ALE + +K+IDT+SKFGHGRFQT  E +++ G +K
Sbjct:  150 RIKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 307.76 bits (787), Expect = 5.408e-83
Identity = 144/242 (59.50%), Postives = 188/242 (77.69%), Query Frame = 2
Query:    5 IKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 712
            +KKY  V+RV+ HTQ+ K+   +QKKAH+ME+Q+NGGT+AEKV +A    EKQ+PV +VF ++E+ID+I VTKG+G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK+Y++G+      G    +   T +D T+K ITP+GGFPHYG V +D++M+KGC  G KKRV+TLR+SLL   SR ALE I++KFIDT+SKFGHGRFQT QEK+ + G  K
Sbjct:  153 MKKYCKVIRVIVHTQM-KLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRGIKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 304.679 bits (779), Expect = 4.578e-82
Identity = 143/242 (59.09%), Postives = 186/242 (76.86%), Query Frame = 2
Query:    5 IKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQ------ESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 712
            +KKY  V+RV+ HTQ+ K+   +QKKAH+MEIQ+NGGT+AEKV +A    EKQ+PV +VF + E+ID+I VTKG+G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK++++G+G          +   T +D T K ITP+GGFPHYG V +D++M+KGC  G KKRV+TLR+SLL   SR A+E I++KFIDT+SKFGHGRFQT QEK+ + G  K
Sbjct:  153 MKKYCKVIRVIVHTQM-KLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 8.363e-76
Identity = 142/237 (59.92%), Postives = 180/237 (75.95%), Query Frame = 2
Query:    5 IKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMKA 715
            IK+ A  VRVL  TQ   +KGL  KKAH+ EIQVNGG+I+EKV++A G  EK+I +  VF  +E ID IGVTKGKG++G V R+GV + PRK+ +G+RKVACIGAWHP+RV +++ARAGQ G+H RTE NK+VY +G G        TEFD TEK I+PMGGFPHYG V++D++M+KG  VG +KRVVTLR+SLL+Q    A EE+ IKF+DTSSK GHGRFQT+ EK+ +YG  KA
Sbjct:  146 IKERAHCVRVLVQTQPTLIKGLGLKKAHIAEIQVNGGSISEKVEWALGRLEKEIAIGEVFGVNENIDTIGVTKGKGFQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMIGNGSSNIK---TEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR---AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARKA 376          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_PIG (60S ribosomal protein L3 (Fragment) OS=Sus scrofa GN=RPL3 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.715e-42
Identity = 78/130 (60.00%), Postives = 102/130 (78.46%), Query Frame = 2
Query:  161 QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMI 532
            ++PV+ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPAR +F+VARAGQ GYHHRTE+NKK+YK+G+      G    +   T++D ++K I P+G F HYG V +D++M+
Sbjct:    1 RVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNXXTDYDLSDKSINPLGRFVHYGEVTNDFVML 130          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_THESM (50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.299e-41
Identity = 90/214 (42.06%), Postives = 126/214 (58.88%), Query Frame = 2
Query:   11 KYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 652
            K   VV + A    +      +KK  +ME  V G +I EK +Y      K+I V  + Q+ E++DI+ VTKGKG +G V RWGV     K  +G RKVA IG WHPARV +TV RAGQ G+HHRTE NK++ ++G+ G+ +  G       + +ITP GGFPHYG+VK+D++MI G   G  KR++ +R ++     R   E  +I +I   SK
Sbjct:  151 KTGEVVELRALVATQPWLARIKKKPEVMEYAVGGTSIEEKFNYIKEKLGKEIRVGEILQEGELLDIVAVTKGKGTQGPVKRWGVKLTSHKDSKGRRKVATIGPWHPARVMWTVPRAGQMGFHHRTEFNKRLLRIGENGKLTLNG------EKIEITPNGGFPHYGVVKNDFIMIAGTIPGAIKRIIRMRPAVRPPAKRPPAEAPQITYISRESK 358          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_PYRHO (50S ribosomal protein L3P OS=Pyrococcus horikoshii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.647e-39
Identity = 85/209 (40.67%), Postives = 124/209 (59.33%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 652
            VR L  TQ   +K   +KK  +ME  + G ++ EK +Y      K+I V  V ++ E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+ G+         D  E +ITP GGFPHYGIV+ D++MI G   G  KR++ +R ++     +  ++  +I ++   SK
Sbjct:  161 VRALVSTQPWVIK--LKKKPEVMEYAIGGTSVEEKFNYIKEKLGKEIRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK------LVIDGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 361          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_PYRFU (50S ribosomal protein L3P OS=Pyrococcus furiosus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.810e-39
Identity = 83/209 (39.71%), Postives = 126/209 (60.29%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 652
            VR +  TQ   +K   +KK  +ME  + G ++ EK +Y      K++ V  V ++ E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+ G+     +   + TE +ITP GGFPHYGIV+ D++MI G   G  KR++ +R ++     +  ++  +I ++   SK
Sbjct:  163 VRAIVATQPWVIK--LKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK-----LKLDENTEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 364          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_PYRAB (50S ribosomal protein L3P OS=Pyrococcus abyssi GN=rpl3p PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.810e-39
Identity = 84/209 (40.19%), Postives = 124/209 (59.33%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 652
            VR L  TQ   +K   +KK  +ME  + G ++ EK +Y      K++ V  V ++ E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+ G+         D  E +ITP GGFPHYGIV+ D++MI G   G  KR++ +R ++     +  ++  +I ++   SK
Sbjct:  160 VRALVATQPWVIK--LKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK------LVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 360          
The following BLAST results are available for this feature:
BLAST of DY258677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3B_SCHPO3.170e-8362.4560S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]
RL3A_SCHPO3.170e-8362.4560S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3L_BOVIN5.408e-8359.5060S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3L_HUMAN4.578e-8259.0960S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3_ENCCU8.363e-7659.9260S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3_PIG2.715e-4260.0060S ribosomal protein L3 (Fragment) OS=Sus scrofa ... [more]
RL3_THESM2.299e-4142.0650S ribosomal protein L3P OS=Thermococcus sibiricu... [more]
RL3_PYRHO1.647e-3940.6750S ribosomal protein L3P OS=Pyrococcus horikoshii... [more]
RL3_PYRFU2.810e-3939.7150S ribosomal protein L3P OS=Pyrococcus furiosus G... [more]
RL3_PYRAB2.810e-3940.1950S ribosomal protein L3P OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258677 ID=DY258677; Name=DY258677; organism=Citrus clementina; type=EST; length=882bp
GAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGA
TTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATC
CAGGTCAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCATATGGCTT
CTTTGAAAAGCAAATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGA
TTGACATCATCGGTGTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACC
CGTTGGGGTGTTACCCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAA
GGTGGCTTGTATTGGTGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTG
CCAGAGCTGGTCAGAATGGATACCATCATCGTACTGAAATGAACAAGAAG
GTTTACAAGCTTGGCAAGGGTGGACAGGAGTCTCACACTGGCATAACTGA
ATTTGACAGGACTGAGAAGGACATTACCCCAATGGGTGGCTTTCCTCACT
ATGGTATTGTGAAAGATGATTATTTGATGATCAAGGGATGCTGTGTTGGA
CCTAAGAAGAGGGTGGTCACGCTTCGTCAGTCGCTTCTCAAACAGACATC
TCGTTTAGCTCTTGAGGAAATCAAAATCAAGTTCATTGATACCTCTTCCA
AGTTTGGGCATGGCCGCTTCCAGACTACACAGGAGAAACAGAAGTACTAT
GGACGCATGAAAGCATAATTATGCTAAAAAGACAAGAGTTTTGCACCGTT
ATAGTTAATTCAGGCAGCCTAAATTTTATCCAGTTTGACTATCTTGGAAC
AGTTTTTGAGCCTGGCATCAGCTGTGTTTCTTTTTCCTTTTTTTATTTAT
TTTTTAAGGAGATGGTCGTGCTTTATTTCTAT
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