DY258677

Overview
NameDY258677
Unique NameDY258677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:517..1398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.068e-38
Identity = 87/213 (40.85%), Postives = 129/213 (60.56%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658
            VRVL HT   K+  L +KK  ++EI++ G  I E+++YA     KQ+ +  VFQ+ E++D IGVTKGKG++G V RWGV  +  +   +G+ R V  IG W P  V ++V   GQ GYH RTE NK++ K+G  G E              ITP GGF HYG+++++Y+++KG   GP KR++ LR+++  Q   + + E  I +I T+SK G
Sbjct:  139 VRVLVHTN-PKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPE--ITYISTTSKQG 334          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.181e-37
Identity = 87/211 (41.23%), Postives = 123/211 (58.29%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 652
            VR+L HTQ   + GLK KK  +ME  + G  +  K DYA     K++    V  + E++D+I VTKGKG +G V RWGV     K  R    R +  +G WHPARV +TV +AGQ G+HHRTE NK++  +G+ G+         D  E +ITP GGFPHYGIV+ D+LMI+G   G  KR++ +R ++     +  +E  +I ++   SK
Sbjct:  143 VRLLVHTQ-PWLIGLK-KKPEVMEYAIGGDDVKAKFDYAKEKIGKELRAGEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK------LVLDGNEIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSRESK 345          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.014e-37
Identity = 85/211 (40.28%), Postives = 122/211 (57.82%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 652
            VR+L HTQ   +K   +KK  +ME  + G  +  K +YA     K+I    V  + E++D+I VTKGKG +G V RWGV     K  R    R +  +G WHPARV +TV +AGQ G+HHRTE NK++  +G+ G+    G       E DITP GGFPHYGI++ D+LMI+G   G  KR++ +R ++     +  +E  +I ++   SK
Sbjct:  143 VRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFEYAKERIGKEIRASEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGKLVLNG------NEIDITPKGGFPHYGIIRSDFLMIEGSVPGSFKRIIRVRPAIKPPKKKPPVERPQITYVSRESK 345          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.435e-37
Identity = 85/213 (39.91%), Postives = 123/213 (57.75%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658
            +RVLAHT  R + G+ +K   +MEI V G ++ E++  A G    Q+ V  +F   E ID+  VTKGKG +G V RWG+    RK  R   LR V  +G WHPAR+S+ V + GQ GYH RTE NK++  +G  G               DITP GGF  YG+V+++Y++IKG   GP KR+V +R++ ++  +  A +  +I ++   SK G
Sbjct:  137 IRVLAHTNPRLLTGVPKKVPDIMEIPVTGRSVEEQLKAAEGLLGSQVAVSNIFNVGEWIDVSAVTKGKGTQGPVKRWGIMLQKRKHSRTGKLRHVGNLGPWHPARISWRVPQLGQTGYHQRTEFNKRIMAIGTNG--------------TDITPDGGFVGYGVVRNEYMLIKGSVPGPVKRLVRMRRA-IRPGAAFAPKAPQILYVSKESKQG 334          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.486e-37
Identity = 83/211 (39.34%), Postives = 123/211 (58.29%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 652
            VR+L HTQ   +K   +KK  +ME  + G  +  K DYA     K++    V  + E++D+I VTKGKG +G V RWG+     K  R    R V  +G WHP RV +TV +AGQ G+HHRTE NK++  +G+ G+     +   ++ E +ITP GGFPHYGI++ D+LMI+G   G  KR++ +R ++     +  +E  +I +I   SK
Sbjct:  143 VRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGELLDVIAVTKGKGTQGPVKRWGIKIQFHKAQRAGKGRHVGNLGPWHPTRVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK-----LKLDEKNEIEITPKGGFPHYGIIRSDFLMIQGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYISRESK 346          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.994e-37
Identity = 83/220 (37.73%), Postives = 130/220 (59.09%), Query Frame = 2
Query:    5 IKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658
            ++  AS VRV+ +TQ   + G+ +K   +ME ++ GG + E +DYA     K+I V  VF +  +ID+I VTKGKG++G V RWGV  L  K  R    R+V  +G W+P  V +TV +AGQ G+H RTE NK++ K+G+ G+E              ITP GGF HYG+++  Y+++ G   GP KR++ +R ++  +  +   + + I ++ T+SK G
Sbjct:  128 VENGASEVRVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEE--------------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPKAHFDGVNIVYVSTTSKQG 330          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.705e-36
Identity = 85/217 (39.17%), Postives = 125/217 (57.60%), Query Frame = 2
Query:   17 ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 661
            A+ VRV+ HT   K  G+ +KK  ++EI++ G ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  + +I T SK G+
Sbjct:  135 ATEVRVIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.908e-36
Identity = 86/214 (40.19%), Postives = 124/214 (57.94%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 661
            +RV+ HT   K  G+ +KK  ++EI+V G ++AEK+ YA     K + ++ VF+  E ID + VTKGKG++G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR ++     +  L E  + +I   SK G+
Sbjct:  138 LRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPE--VTYISKESKQGN 334          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.908e-36
Identity = 86/214 (40.19%), Postives = 124/214 (57.94%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 661
            +RV+ HT   K  G+ +KK  ++EI+V G ++AEK+ YA     K + ++ VF+  E ID + VTKGKG++G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR ++     +  L E  + +I   SK G+
Sbjct:  138 LRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPE--VTYISKESKQGN 334          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.798e-36
Identity = 85/217 (39.17%), Postives = 124/217 (57.14%), Query Frame = 2
Query:   17 ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 661
            A+ VR + HT   K  G+ +KK  ++EI++ G ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  I +I T SK G+
Sbjct:  135 ATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--IAYISTESKQGN 334          
The following BLAST results are available for this feature:
BLAST of DY258677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_METJA1.068e-3840.8550S ribosomal protein L3P OS=Methanocaldococcus ja... [more]
RL3_PYRKO1.181e-3741.2350S ribosomal protein L3P OS=Pyrococcus kodakaraen... [more]
RL3_THEGJ2.014e-3740.2850S ribosomal protein L3P OS=Thermococcus gammatol... [more]
RL3_METTP3.435e-3739.9150S ribosomal protein L3P OS=Methanosaeta thermoph... [more]
RL3_THEON4.486e-3739.3450S ribosomal protein L3P OS=Thermococcus onnurine... [more]
RL3_ARCFU9.994e-3737.7350S ribosomal protein L3P OS=Archaeoglobus fulgidu... [more]
RL3_METM71.705e-3639.1750S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METVS2.908e-3640.1950S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METVA2.908e-3640.1950S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METMP3.798e-3639.1750S ribosomal protein L3P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258677 ID=DY258677; Name=DY258677; organism=Citrus clementina; type=EST; length=882bp
GAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGA
TTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATC
CAGGTCAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCATATGGCTT
CTTTGAAAAGCAAATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGA
TTGACATCATCGGTGTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACC
CGTTGGGGTGTTACCCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAA
GGTGGCTTGTATTGGTGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTG
CCAGAGCTGGTCAGAATGGATACCATCATCGTACTGAAATGAACAAGAAG
GTTTACAAGCTTGGCAAGGGTGGACAGGAGTCTCACACTGGCATAACTGA
ATTTGACAGGACTGAGAAGGACATTACCCCAATGGGTGGCTTTCCTCACT
ATGGTATTGTGAAAGATGATTATTTGATGATCAAGGGATGCTGTGTTGGA
CCTAAGAAGAGGGTGGTCACGCTTCGTCAGTCGCTTCTCAAACAGACATC
TCGTTTAGCTCTTGAGGAAATCAAAATCAAGTTCATTGATACCTCTTCCA
AGTTTGGGCATGGCCGCTTCCAGACTACACAGGAGAAACAGAAGTACTAT
GGACGCATGAAAGCATAATTATGCTAAAAAGACAAGAGTTTTGCACCGTT
ATAGTTAATTCAGGCAGCCTAAATTTTATCCAGTTTGACTATCTTGGAAC
AGTTTTTGAGCCTGGCATCAGCTGTGTTTCTTTTTCCTTTTTTTATTTAT
TTTTTAAGGAGATGGTCGTGCTTTATTTCTAT
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