DY258677

Overview
NameDY258677
Unique NameDY258677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:517..1398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.960e-36
Identity = 84/217 (38.71%), Postives = 124/217 (57.14%), Query Frame = 2
Query:   17 ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 661
            A+ VR + HT   K  G+ +KK  ++EI++ G ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  + +I T SK G+
Sbjct:  135 ATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.478e-36
Identity = 84/217 (38.71%), Postives = 124/217 (57.14%), Query Frame = 2
Query:   17 ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 661
            A+ VR + HT   K  G+ +KK  ++EI++ G ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  + +I T SK G+
Sbjct:  135 ATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.443e-35
Identity = 78/189 (41.27%), Postives = 116/189 (61.38%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 586
            +RV+  TQ +K  G+ +KK  +ME ++ G  + E+ +YA     ++I    VF + E++D+  +TKGKG++GVV RWGVT   RKT R    R +  IG   P+RV +TV  AGQ GYH RTE NK++ K+G+ G+E              +TP GGF +YG+V+ DY+MI G   GPKKR++ +R ++
Sbjct:  145 IRVIVATQPKKA-GVPKKKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDGEE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.222e-34
Identity = 78/214 (36.45%), Postives = 124/214 (57.94%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 661
            VR + HT   K   L +KK  ++EI++ G  I++ + YA     K++ ++ VF   E ID + +TKGKG++G V RWG+  +  +  ++G+ R    IG W P R+ +TV  AGQ G+H RTE NK++ K+G+ G E              I P GGF +YG+VK++Y+++KG   GP KR+V LR+++     +  L E  + ++ T SK G+
Sbjct:  137 VRAIVHTN-PKDTNLPKKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKRWGIKIQFGKHQNKGVGRHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIGENGSE--------------IVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLREAIRNPEDKFGLPE--LTYVSTESKQGN 333          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.034e-33
Identity = 83/219 (37.90%), Postives = 122/219 (55.71%), Query Frame = 2
Query:   11 KYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKD-ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658
            +Y + VRV+ HT  R +  + +KK  + E  + G T  EK +YA     K +    +F +   +D I VTKGKG++G V RWG+     K  R    R +  +G W P+R  +TV +AGQ GYH RTE NK++ K+G             D +E D + P GGF  YG+V++DY+MIKG   GP KR+V LR+++  + +    E  +I +I T+SK G
Sbjct:  134 EYVADVRVIVHTNPR-LASVPKKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKGKGFQGPVKRWGIRIQYGKAARSSKGRHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIG-------------DASEADLVNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASKQG 336          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.764e-33
Identity = 75/213 (35.21%), Postives = 123/213 (57.75%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658
            +RV+  T   ++ G+ +K   LME ++ GG +A++ ++A     K + +  VF   E++D+  +TKG G +G V RWG+    RK  R  +K  V  +G W+P R+ + V + GQ GYH RTE NK++ K+G             D+ E +ITP GGF HYG++++DY+M+KG   GP KR+V +R ++  +   +  +  +I ++ T SK G
Sbjct:  141 LRVMTVTLTSEVSGIPKKVPELMENRIAGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG-------------DKAE-EITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAV--RPKNMPKQAPEITYLSTQSKMG 337          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.304e-33
Identity = 80/213 (37.56%), Postives = 119/213 (55.87%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658
            +  LA+TQ   M G+ +K   LMEI+V GG IA++ +YA+G   K+I +  V +     DI  +T GKG +G V RWGVT   RK   G   R V  +G W+P  V + V ++GQ GY  RTE NK++ K+G+ G E              ITP GGF +YG++++ Y++IKG   GP KR++ +R ++  +     +    I+F+   SK G
Sbjct:  141 IYALAYTQPATMSGVPKKVPDLMEIKVAGGDIAKQYEYAFGLLGKEIRLSNVIETGAYADITAITIGKGTQGPVKRWGVTLRKRKHSVGGKERHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEFNKRILKIGENGAE--------------ITPAGGFLNYGVIRNAYVVIKGSIPGPAKRLIRIRPAI--RQGEHVVRSPAIQFVSVQSKQG 337          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_STAMF (50S ribosomal protein L3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.009e-33
Identity = 85/214 (39.72%), Postives = 126/214 (58.88%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFT-VARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658
            +RV+A T I  + G+ +KK  ++EI++ GGT++E++DYA       + VD VF++ + IDIIGVTKGKG++GV+ R+GV  LPR  K  +G RK   IG+  P   + +   + GQ G+H RTE NK++ K+G  G E              +TP GGF  YGIV   Y+M+ G  +GP+KR++ LR   ++  S   LE  +I +    SK G
Sbjct:  200 IRVIAST-IPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIGINGWE--------------VTPKGGFLGYGIVYGPYIMLHGSIIGPRKRLLVLRHP-IRPPSWYPLEAPQIIYYSHESKQG 394          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.493e-32
Identity = 85/214 (39.72%), Postives = 119/214 (55.61%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKD-ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658
            +RVL HT+  K+  + +KK  ++E  + G ++ +K++YA     K+I    VFQ+ E  D I  TKGKG +G V R+GV     K  R    R V  IG W P R  +TVA  GQ GYH RTE NKK+ K+G             D +E D I P GGF  YG VK++Y+++KG   GP KR+V LR+ +   + ++   E  I +I T+SK G
Sbjct:  139 IRVLIHTK-PKLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKEITPQDVFQEGEYTDAIATTKGKGVQGPVKRFGVRIQYGKAARSGIERHVGSIGPWTPNRTMWTVAMQGQMGYHKRTEYNKKLLKIG-------------DESEVDLINPDGGFVKYGFVKNNYILVKGSLPGPSKRLVVLRKGVRNASKQVTAPE--ISYISTTSKQG 336          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.950e-32
Identity = 77/215 (35.81%), Postives = 117/215 (54.42%), Query Frame = 2
Query:   20 SVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658
            S +  LA+T+  ++ G+ +K   LME+++ GG++ +++ YA     K+I +    +  E +D+  VT GKG EG V RWGV    RK  RG +K  +  +G WHP  V + V + GQ GY  RTE NK++ K+G  G E              ITP GGF HYG+V+  Y++IKG   GP KR+V +R ++  +     +    I F+   S+ G
Sbjct:  139 SELYALAYTRPMELTGVPKKVPDLMEMRIAGGSLEDQIAYAAEILGKEITISGNLEVGEYVDVTAVTTGKGTEGPVKRWGVQVRKRKHSRGGKKRHIGNLGPWHPHHVRWQVPQMGQMGYQQRTEFNKRILKIGADGDE--------------ITPAGGFLHYGLVRGPYVLIKGSVPGPNKRLVRIRSAI--RQGEHTVRTPAINFVSVQSQQG 337          
The following BLAST results are available for this feature:
BLAST of DY258677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_METM64.960e-3638.7150S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM56.478e-3638.7150S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METKA1.443e-3541.2750S ribosomal protein L3P OS=Methanopyrus kandleri... [more]
RL3_META31.222e-3436.4550S ribosomal protein L3P OS=Methanococcus aeolicu... [more]
RL3_METTH1.034e-3337.9050S ribosomal protein L3P OS=Methanobacterium ther... [more]
RL3_UNCMA1.764e-3335.2150S ribosomal protein L3P OS=Uncultured methanogen... [more]
RL3_METB62.304e-3337.5650S ribosomal protein L3P OS=Methanoregula boonei ... [more]
RL3_STAMF3.009e-3339.7250S ribosomal protein L3P OS=Staphylothermus marin... [more]
RL3_METST1.493e-3239.7250S ribosomal protein L3P OS=Methanosphaera stadtm... [more]
RL3_METMJ1.950e-3235.8150S ribosomal protein L3P OS=Methanoculleus marisn... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258677 ID=DY258677; Name=DY258677; organism=Citrus clementina; type=EST; length=882bp
GAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGA
TTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATC
CAGGTCAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCATATGGCTT
CTTTGAAAAGCAAATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGA
TTGACATCATCGGTGTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACC
CGTTGGGGTGTTACCCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAA
GGTGGCTTGTATTGGTGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTG
CCAGAGCTGGTCAGAATGGATACCATCATCGTACTGAAATGAACAAGAAG
GTTTACAAGCTTGGCAAGGGTGGACAGGAGTCTCACACTGGCATAACTGA
ATTTGACAGGACTGAGAAGGACATTACCCCAATGGGTGGCTTTCCTCACT
ATGGTATTGTGAAAGATGATTATTTGATGATCAAGGGATGCTGTGTTGGA
CCTAAGAAGAGGGTGGTCACGCTTCGTCAGTCGCTTCTCAAACAGACATC
TCGTTTAGCTCTTGAGGAAATCAAAATCAAGTTCATTGATACCTCTTCCA
AGTTTGGGCATGGCCGCTTCCAGACTACACAGGAGAAACAGAAGTACTAT
GGACGCATGAAAGCATAATTATGCTAAAAAGACAAGAGTTTTGCACCGTT
ATAGTTAATTCAGGCAGCCTAAATTTTATCCAGTTTGACTATCTTGGAAC
AGTTTTTGAGCCTGGCATCAGCTGTGTTTCTTTTTCCTTTTTTTATTTAT
TTTTTAAGGAGATGGTCGTGCTTTATTTCTAT
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