DY258677
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 4.960e-36 Identity = 84/217 (38.71%), Postives = 124/217 (57.14%), Query Frame = 2 Query: 17 ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 661 A+ VR + HT K G+ +KK ++EI++ G ++AE++ YA K + + VF+ E+ID + +TKGKG++G V RWG+ + + +G+ R IG W P RV +TV GQ G+H RTE NK++ KLG G E ITP GGF +YG VK+ Y+++KG GP KR+V LR S+ + L E + +I T SK G+ Sbjct: 135 ATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.478e-36 Identity = 84/217 (38.71%), Postives = 124/217 (57.14%), Query Frame = 2 Query: 17 ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 661 A+ VR + HT K G+ +KK ++EI++ G ++AE++ YA K + + VF+ E+ID + +TKGKG++G V RWG+ + + +G+ R IG W P RV +TV GQ G+H RTE NK++ KLG G E ITP GGF +YG VK+ Y+++KG GP KR+V LR S+ + L E + +I T SK G+ Sbjct: 135 ATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.443e-35 Identity = 78/189 (41.27%), Postives = 116/189 (61.38%), Query Frame = 2 Query: 26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 586 +RV+ TQ +K G+ +KK +ME ++ G + E+ +YA ++I VF + E++D+ +TKGKG++GVV RWGVT RKT R R + IG P+RV +TV AGQ GYH RTE NK++ K+G+ G+E +TP GGF +YG+V+ DY+MI G GPKKR++ +R ++ Sbjct: 145 IRVIVATQPKKA-GVPKKKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDGEE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 1.222e-34 Identity = 78/214 (36.45%), Postives = 124/214 (57.94%), Query Frame = 2 Query: 26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 661 VR + HT K L +KK ++EI++ G I++ + YA K++ ++ VF E ID + +TKGKG++G V RWG+ + + ++G+ R IG W P R+ +TV AGQ G+H RTE NK++ K+G+ G E I P GGF +YG+VK++Y+++KG GP KR+V LR+++ + L E + ++ T SK G+ Sbjct: 137 VRAIVHTN-PKDTNLPKKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKRWGIKIQFGKHQNKGVGRHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIGENGSE--------------IVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLREAIRNPEDKFGLPE--LTYVSTESKQGN 333
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 1.034e-33 Identity = 83/219 (37.90%), Postives = 122/219 (55.71%), Query Frame = 2 Query: 11 KYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKD-ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658 +Y + VRV+ HT R + + +KK + E + G T EK +YA K + +F + +D I VTKGKG++G V RWG+ K R R + +G W P+R +TV +AGQ GYH RTE NK++ K+G D +E D + P GGF YG+V++DY+MIKG GP KR+V LR+++ + + E +I +I T+SK G Sbjct: 134 EYVADVRVIVHTNPR-LASVPKKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKGKGFQGPVKRWGIRIQYGKAARSSKGRHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIG-------------DASEADLVNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASKQG 336
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.764e-33 Identity = 75/213 (35.21%), Postives = 123/213 (57.75%), Query Frame = 2 Query: 26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658 +RV+ T ++ G+ +K LME ++ GG +A++ ++A K + + VF E++D+ +TKG G +G V RWG+ RK R +K V +G W+P R+ + V + GQ GYH RTE NK++ K+G D+ E +ITP GGF HYG++++DY+M+KG GP KR+V +R ++ + + + +I ++ T SK G Sbjct: 141 LRVMTVTLTSEVSGIPKKVPELMENRIAGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG-------------DKAE-EITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAV--RPKNMPKQAPEITYLSTQSKMG 337
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 2.304e-33 Identity = 80/213 (37.56%), Postives = 119/213 (55.87%), Query Frame = 2 Query: 26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658 + LA+TQ M G+ +K LMEI+V GG IA++ +YA+G K+I + V + DI +T GKG +G V RWGVT RK G R V +G W+P V + V ++GQ GY RTE NK++ K+G+ G E ITP GGF +YG++++ Y++IKG GP KR++ +R ++ + + I+F+ SK G Sbjct: 141 IYALAYTQPATMSGVPKKVPDLMEIKVAGGDIAKQYEYAFGLLGKEIRLSNVIETGAYADITAITIGKGTQGPVKRWGVTLRKRKHSVGGKERHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEFNKRILKIGENGAE--------------ITPAGGFLNYGVIRNAYVVIKGSIPGPAKRLIRIRPAI--RQGEHVVRSPAIQFVSVQSKQG 337
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_STAMF (50S ribosomal protein L3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 3.009e-33 Identity = 85/214 (39.72%), Postives = 126/214 (58.88%), Query Frame = 2 Query: 26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFT-VARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658 +RV+A T I + G+ +KK ++EI++ GGT++E++DYA + VD VF++ + IDIIGVTKGKG++GV+ R+GV LPR K +G RK IG+ P + + + GQ G+H RTE NK++ K+G G E +TP GGF YGIV Y+M+ G +GP+KR++ LR ++ S LE +I + SK G Sbjct: 200 IRVIAST-IPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIGINGWE--------------VTPKGGFLGYGIVYGPYIMLHGSIIGPRKRLLVLRHP-IRPPSWYPLEAPQIIYYSHESKQG 394
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.493e-32 Identity = 85/214 (39.72%), Postives = 119/214 (55.61%), Query Frame = 2 Query: 26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKD-ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658 +RVL HT+ K+ + +KK ++E + G ++ +K++YA K+I VFQ+ E D I TKGKG +G V R+GV K R R V IG W P R +TVA GQ GYH RTE NKK+ K+G D +E D I P GGF YG VK++Y+++KG GP KR+V LR+ + + ++ E I +I T+SK G Sbjct: 139 IRVLIHTK-PKLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKEITPQDVFQEGEYTDAIATTKGKGVQGPVKRFGVRIQYGKAARSGIERHVGSIGPWTPNRTMWTVAMQGQMGYHKRTEYNKKLLKIG-------------DESEVDLINPDGGFVKYGFVKNNYILVKGSLPGPSKRLVVLRKGVRNASKQVTAPE--ISYISTTSKQG 336
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.950e-32 Identity = 77/215 (35.81%), Postives = 117/215 (54.42%), Query Frame = 2 Query: 20 SVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658 S + LA+T+ ++ G+ +K LME+++ GG++ +++ YA K+I + + E +D+ VT GKG EG V RWGV RK RG +K + +G WHP V + V + GQ GY RTE NK++ K+G G E ITP GGF HYG+V+ Y++IKG GP KR+V +R ++ + + I F+ S+ G Sbjct: 139 SELYALAYTRPMELTGVPKKVPDLMEMRIAGGSLEDQIAYAAEILGKEITISGNLEVGEYVDVTAVTTGKGTEGPVKRWGVQVRKRKHSRGGKKRHIGNLGPWHPHHVRWQVPQMGQMGYQQRTEFNKRILKIGADGDE--------------ITPAGGFLHYGLVRGPYVLIKGSVPGPNKRLVRIRSAI--RQGEHTVRTPAINFVSVQSQQG 337 The following BLAST results are available for this feature:
BLAST of DY258677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258677 ID=DY258677; Name=DY258677; organism=Citrus clementina; type=EST; length=882bpback to top |