DY258677

Overview
NameDY258677
Unique NameDY258677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:517..1398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_SULIA (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.114e-30
Identity = 79/212 (37.26%), Postives = 122/212 (57.55%), Query Frame = 2
Query:   29 RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658
            R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++  + S +     KI +++  SK G
Sbjct:  158 RLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_SULSO (50S ribosomal protein L3P OS=Sulfolobus solfataricus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.060e-30
Identity = 78/212 (36.79%), Postives = 121/212 (57.08%), Query Frame = 2
Query:   29 RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658
            R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+ +  + S +     KI +++  S+ G
Sbjct:  158 RLLVSTQPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLREPV--RPSYVFENPPKITYVNLLSQQG 351          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.636e-29
Identity = 75/216 (34.72%), Postives = 120/216 (55.56%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK--QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLK-QTSRLALEEIKIKFIDTSSKFG 658
            VRV+ HT    +  + +K+  +ME +V GG+++++VD+A    +   +  V  VF+  E  D+ G+TKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  LG                + D++P GGF +YG V   Y ++KG   GP KR+V  R ++      RL   + +++++ T+S  G
Sbjct:  140 VRVITHTVPGALSSVPKKEPDVMETRVGGGSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG----------------DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFRPAVRPGDQPRL---DPEVRYVSTASNQG 336          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.443e-29
Identity = 66/204 (32.35%), Postives = 109/204 (53.43%), Query Frame = 2
Query:   17 ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 622
            A+ +R++ +T    + G+ +K   +ME  V+G  +  K +YA       + +  VF   +++D+  +T G G +G V RWG+  +  K  R   LR+V  +G W PA VS+ V +AGQ GYH RT+ NK++ K+     E              + P GGF +YG+V+ +Y++IKG   GP KR++ LR+    + S +   +I
Sbjct:  138 ANDIRLITYTLPSTLTGVPKKVPDVMETGVSGSDVKAKFEYAKTVLGTMVEISDVFDNGKIVDVAAITTGHGTQGPVKRWGINLMKNKHSRQGSLRQVGTLGPWTPAHVSWRVPQAGQMGYHQRTDYNKRILKMSSDVDE--------------VNPAGGFVNYGLVRGNYILIKGSVPGPSKRLIRLREPTRSKVSSIGEPQI 327          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.496e-29
Identity = 79/214 (36.92%), Postives = 122/214 (57.01%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPA-RVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658
            +R+L  TQ   +  L +K+  ++EIQ+ GG+I ++++Y      KQIPV  VF++ ++ DIIGVTKGKG++GV+ R+ V   PR  K  +G RK   IGA  P+      V + GQ G+H RTE NK++ K+G    E              I P GG  +YG+VK+ YL+I+G  +G +KR + LR  +    S  +    KI +++ +S+ G
Sbjct:  148 MRLLVSTQPWLVPSLGKKRPEIVEIQIGGGSIQDQLNYGLSLLGKQIPVRDVFREGQLTDIIGVTKGKGFQGVIKRYSVVEFPRWHKHRKGSRK---IGARGPSISTPSYVPQPGQLGFHRRTEYNKRIIKIGDNVNE--------------INPAGGIVNYGLVKNTYLVIEGSVLGSRKRPLFLRYPIRPSWSPESAP--KITYVNLASQQG 342          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_CALMQ (50S ribosomal protein L3P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.496e-29
Identity = 77/189 (40.74%), Postives = 109/189 (57.67%), Query Frame = 2
Query:   20 SVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 577
            S ++V+A TQ  K  G+ +K   ++EI V G  TI E+  YA G   K++    VF+  +++D+IGVTKGKG +GV+ R+GV  LPR  K  +G R+   +G   PA V +T  R GQ G+H RTE NK++ K+   G E              ITP GGF HYGIV+  Y++I+G   G  KR++  R
Sbjct:  145 SYIKVIAMTQPYKA-GVGKKTPEVLEIPVGGVPTIDEQFKYASGLLGKEVKPTDVFKPGQLVDVIGVTKGKGTQGVIKRFGVKELPRWHKHRKGSRRTGTVGP-KPA-VMYTQPRMGQMGFHRRTEYNKRILKISDNGSE--------------ITPKGGFKHYGIVRSGYMLIEGSTPGVVKRLIAFR 316          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 1.002e-28
Identity = 76/217 (35.02%), Postives = 120/217 (55.30%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDA---VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL-KQTSRLALEEIKIKFIDTSSKFG 658
            +RV+ HT      G+ +K   +ME +V GGT+A+++++A    E    V A   VF+  E  D  G+TKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +  G +                TP GGFP+YG V   Y ++KG   GP++R+V  R ++   ++ RL   + +++++ T+S  G
Sbjct:  138 IRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIEDG-GVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRL---DPEVRYVSTASNQG 335          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.002e-28
Identity = 76/217 (35.02%), Postives = 120/217 (55.30%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDA---VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL-KQTSRLALEEIKIKFIDTSSKFG 658
            +RV+ HT      G+ +K   +ME +V GGT+A+++++A    E    V A   VF+  E  D  G+TKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +  G +                TP GGFP+YG V   Y ++KG   GP++R+V  R ++   ++ RL   + +++++ T+S  G
Sbjct:  138 IRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIEDG-GVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRL---DPEVRYVSTASNQG 335          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.806e-28
Identity = 71/215 (33.02%), Postives = 112/215 (52.09%), Query Frame = 2
Query:   20 SVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658
            S +R + +T  + + G+ +K   +ME  ++   +  K +YA       + +  VF+   +ID   +T GKG +G   RWG+  +  K  R   LR++  +G +   RVS+ V + GQ GYH RTE NK++ K+G  G+E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  +  +  L E  I  I   SK G
Sbjct:  139 SDIRAVTYTLPKSLTGVPKKTPDIMESGISARDLNTKFEYAKSILGTLVSITDVFKTGTLIDTAAITIGKGTQGPAKRWGIQLMKGKHSRQGSLRQIGTLGGFGLRRVSWRVPQMGQTGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILHISRESKQG 337          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_AERPE (50S ribosomal protein L3P OS=Aeropyrum pernix GN=rpl3p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.493e-28
Identity = 78/220 (35.45%), Postives = 123/220 (55.91%), Query Frame = 2
Query:   17 ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV-DYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSF-TVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL--KQTSRLALEEIKIKFIDTSSKFG 658
            A  VR++A +Q +   GL +KK  L+EI+V G +   K+ DYA       I V+ VF++ +++D+I VTKGKG++GV+ RWGV  LPR  K  +G R+   IGA    R +F    +AGQ G+H RTE NK++  +   G +              +TP GGF  YG+V+  ++M+ G   G  KR + +R ++   +   +L + + +I +I  +SK G
Sbjct:  141 AEDVRLIAASQPKLAGGLSKKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDGYK--------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISLASKQG 343          
The following BLAST results are available for this feature:
BLAST of DY258677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_SULIA3.114e-3037.2650S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULSO9.060e-3036.7950S ribosomal protein L3P OS=Sulfolobus solfataric... [more]
RL3_NATPD2.636e-2934.7250S ribosomal protein L3P OS=Natronomonas pharaoni... [more]
RL3_METBU3.443e-2932.3550S ribosomal protein L3P OS=Methanococcoides burt... [more]
RL3_SULAC4.496e-2936.9250S ribosomal protein L3P OS=Sulfolobus acidocalda... [more]
RL3_CALMQ4.496e-2940.7450S ribosomal protein L3P OS=Caldivirga maquilinge... [more]
RL3_HALSA1.002e-2835.0250S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_HALS31.002e-2835.0250S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_METBF3.806e-2833.0250S ribosomal protein L3P OS=Methanosarcina barker... [more]
RL3_AERPE6.493e-2835.4550S ribosomal protein L3P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258677 ID=DY258677; Name=DY258677; organism=Citrus clementina; type=EST; length=882bp
GAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGA
TTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATC
CAGGTCAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCATATGGCTT
CTTTGAAAAGCAAATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGA
TTGACATCATCGGTGTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACC
CGTTGGGGTGTTACCCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAA
GGTGGCTTGTATTGGTGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTG
CCAGAGCTGGTCAGAATGGATACCATCATCGTACTGAAATGAACAAGAAG
GTTTACAAGCTTGGCAAGGGTGGACAGGAGTCTCACACTGGCATAACTGA
ATTTGACAGGACTGAGAAGGACATTACCCCAATGGGTGGCTTTCCTCACT
ATGGTATTGTGAAAGATGATTATTTGATGATCAAGGGATGCTGTGTTGGA
CCTAAGAAGAGGGTGGTCACGCTTCGTCAGTCGCTTCTCAAACAGACATC
TCGTTTAGCTCTTGAGGAAATCAAAATCAAGTTCATTGATACCTCTTCCA
AGTTTGGGCATGGCCGCTTCCAGACTACACAGGAGAAACAGAAGTACTAT
GGACGCATGAAAGCATAATTATGCTAAAAAGACAAGAGTTTTGCACCGTT
ATAGTTAATTCAGGCAGCCTAAATTTTATCCAGTTTGACTATCTTGGAAC
AGTTTTTGAGCCTGGCATCAGCTGTGTTTCTTTTTCCTTTTTTTATTTAT
TTTTTAAGGAGATGGTCGTGCTTTATTTCTAT
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