DY258677
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_SULIA (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl3p PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 3.114e-30 Identity = 79/212 (37.26%), Postives = 122/212 (57.55%), Query Frame = 2 Query: 29 RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658 R+L TQ RK+ L +K L+EIQ+ GG ++DYA K+I + VF++ ++ID++GVTKGKG+ GV+ R+ V LPR K +G RK+ G S+T + GQ G+H RTE NK++ K+G K+I P GGF YGIV++ Y++++G +G KKR + LR+++ + S + KI +++ SK G Sbjct: 158 RLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_SULSO (50S ribosomal protein L3P OS=Sulfolobus solfataricus GN=rpl3p PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 9.060e-30 Identity = 78/212 (36.79%), Postives = 121/212 (57.08%), Query Frame = 2 Query: 29 RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658 R+L TQ RK+ L +K L+EIQ+ GG ++DYA K+I + VF++ ++ID++GVTKGKG+ GV+ R+ V LPR K +G RK+ G S+T + GQ G+H RTE NK++ K+G K+I P GGF YGIV++ Y++++G +G KKR + LR+ + + S + KI +++ S+ G Sbjct: 158 RLLVSTQPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLREPV--RPSYVFENPPKITYVNLLSQQG 351
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.636e-29 Identity = 75/216 (34.72%), Postives = 120/216 (55.56%), Query Frame = 2 Query: 26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK--QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLK-QTSRLALEEIKIKFIDTSSKFG 658 VRV+ HT + + +K+ +ME +V GG+++++VD+A + + V VF+ E D+ G+TKGKG +G V RWGV + K R R++ +G W+P+RV TV + GQ GYH RTE+NK++ LG + D++P GGF +YG V Y ++KG GP KR+V R ++ RL + +++++ T+S G Sbjct: 140 VRVITHTVPGALSSVPKKEPDVMETRVGGGSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG----------------DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFRPAVRPGDQPRL---DPEVRYVSTASNQG 336
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.443e-29 Identity = 66/204 (32.35%), Postives = 109/204 (53.43%), Query Frame = 2 Query: 17 ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 622 A+ +R++ +T + G+ +K +ME V+G + K +YA + + VF +++D+ +T G G +G V RWG+ + K R LR+V +G W PA VS+ V +AGQ GYH RT+ NK++ K+ E + P GGF +YG+V+ +Y++IKG GP KR++ LR+ + S + +I Sbjct: 138 ANDIRLITYTLPSTLTGVPKKVPDVMETGVSGSDVKAKFEYAKTVLGTMVEISDVFDNGKIVDVAAITTGHGTQGPVKRWGINLMKNKHSRQGSLRQVGTLGPWTPAHVSWRVPQAGQMGYHQRTDYNKRILKMSSDVDE--------------VNPAGGFVNYGLVRGNYILIKGSVPGPSKRLIRLREPTRSKVSSIGEPQI 327
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 4.496e-29 Identity = 79/214 (36.92%), Postives = 122/214 (57.01%), Query Frame = 2 Query: 26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPA-RVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658 +R+L TQ + L +K+ ++EIQ+ GG+I ++++Y KQIPV VF++ ++ DIIGVTKGKG++GV+ R+ V PR K +G RK IGA P+ V + GQ G+H RTE NK++ K+G E I P GG +YG+VK+ YL+I+G +G +KR + LR + S + KI +++ +S+ G Sbjct: 148 MRLLVSTQPWLVPSLGKKRPEIVEIQIGGGSIQDQLNYGLSLLGKQIPVRDVFREGQLTDIIGVTKGKGFQGVIKRYSVVEFPRWHKHRKGSRK---IGARGPSISTPSYVPQPGQLGFHRRTEYNKRIIKIGDNVNE--------------INPAGGIVNYGLVKNTYLVIEGSVLGSRKRPLFLRYPIRPSWSPESAP--KITYVNLASQQG 342
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_CALMQ (50S ribosomal protein L3P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl3p PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 4.496e-29 Identity = 77/189 (40.74%), Postives = 109/189 (57.67%), Query Frame = 2 Query: 20 SVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 577 S ++V+A TQ K G+ +K ++EI V G TI E+ YA G K++ VF+ +++D+IGVTKGKG +GV+ R+GV LPR K +G R+ +G PA V +T R GQ G+H RTE NK++ K+ G E ITP GGF HYGIV+ Y++I+G G KR++ R Sbjct: 145 SYIKVIAMTQPYKA-GVGKKTPEVLEIPVGGVPTIDEQFKYASGLLGKEVKPTDVFKPGQLVDVIGVTKGKGTQGVIKRFGVKELPRWHKHRKGSRRTGTVGP-KPA-VMYTQPRMGQMGFHRRTEYNKRILKISDNGSE--------------ITPKGGFKHYGIVRSGYMLIEGSTPGVVKRLIAFR 316
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3) HSP 1 Score: 127.487 bits (319), Expect = 1.002e-28 Identity = 76/217 (35.02%), Postives = 120/217 (55.30%), Query Frame = 2 Query: 26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDA---VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL-KQTSRLALEEIKIKFIDTSSKFG 658 +RV+ HT G+ +K +ME +V GGT+A+++++A E V A VF+ E D G+TKGKG +G V RWGV + K R R++ +G W+P+RV TV + GQ GYH RTE+NK++ + G + TP GGFP+YG V Y ++KG GP++R+V R ++ ++ RL + +++++ T+S G Sbjct: 138 IRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIEDG-GVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRL---DPEVRYVSTASNQG 335
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.002e-28 Identity = 76/217 (35.02%), Postives = 120/217 (55.30%), Query Frame = 2 Query: 26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDA---VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL-KQTSRLALEEIKIKFIDTSSKFG 658 +RV+ HT G+ +K +ME +V GGT+A+++++A E V A VF+ E D G+TKGKG +G V RWGV + K R R++ +G W+P+RV TV + GQ GYH RTE+NK++ + G + TP GGFP+YG V Y ++KG GP++R+V R ++ ++ RL + +++++ T+S G Sbjct: 138 IRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIEDG-GVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRL---DPEVRYVSTASNQG 335
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.806e-28 Identity = 71/215 (33.02%), Postives = 112/215 (52.09%), Query Frame = 2 Query: 20 SVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658 S +R + +T + + G+ +K +ME ++ + K +YA + + VF+ +ID +T GKG +G RWG+ + K R LR++ +G + RVS+ V + GQ GYH RTE NK++ K+G G+E +TP GGF +YG+V+ DY++IKG GP KR++ LR + + + L E I I SK G Sbjct: 139 SDIRAVTYTLPKSLTGVPKKTPDIMESGISARDLNTKFEYAKSILGTLVSITDVFKTGTLIDTAAITIGKGTQGPAKRWGIQLMKGKHSRQGSLRQIGTLGGFGLRRVSWRVPQMGQTGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILHISRESKQG 337
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_AERPE (50S ribosomal protein L3P OS=Aeropyrum pernix GN=rpl3p PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 6.493e-28 Identity = 78/220 (35.45%), Postives = 123/220 (55.91%), Query Frame = 2 Query: 17 ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV-DYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSF-TVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL--KQTSRLALEEIKIKFIDTSSKFG 658 A VR++A +Q + GL +KK L+EI+V G + K+ DYA I V+ VF++ +++D+I VTKGKG++GV+ RWGV LPR K +G R+ IGA R +F +AGQ G+H RTE NK++ + G + +TP GGF YG+V+ ++M+ G G KR + +R ++ + +L + + +I +I +SK G Sbjct: 141 AEDVRLIAASQPKLAGGLSKKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDGYK--------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISLASKQG 343 The following BLAST results are available for this feature:
BLAST of DY258677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258677 ID=DY258677; Name=DY258677; organism=Citrus clementina; type=EST; length=882bpback to top |