DY258679

Overview
NameDY258679
Unique NameDY258679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1307
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1199 contig Ccv1_Contig1199:1..1307. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 3.913e-20
Identity = 61/112 (54.46%), Postives = 69/112 (61.61%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            A SE ++  +  G D YGVTTGFG +S RR +   AL  EL+R LNAG FG G    HTL      AA+LVR+ TLLQG SGIRFEIL  I     T   PCLPL GTI AS
Sbjct:   80 ASSEWILNCIAHGGDIYGVTTGFGGTSHRRTKDGPALQVELLRHLNAGIFGTGS-DGHTLPSETVRAAMLVRINTLLQGYSGIRFEILEAITKLLNTGVTPCLPLRGTITAS 190          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL1_POPKI (Phenylalanine ammonia-lyase G1 OS=Populus kitakamiensis GN=PALG1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.942e-19
Identity = 59/112 (52.68%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            A ++ VM+S +    S+ VT GFG +S R+ +    L KELIR LN G FGNG  S+H L  SA  AA+LVR  TLLQG SGIRFE+L  I      N  PCLPL GTI AS
Sbjct:   62 ASNDWVMDSKN----SHAVTAGFGATSHRKTKQGGELQKELIRFLNVGIFGNGTESNHILPRSATRAAMLVRTNTLLQGYSGIRFEMLEAITKLLNHNITPCLPLRGTITAS 169          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.259e-18
Identity = 56/107 (52.34%), Postives = 67/107 (62.62%), Query Frame = 2
Query:  386 VMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            +++++  G   YGVTTGFG +S R+ +   AL KE++R LN   FG     SHTL  SA  AA+LVRV TLLQG SGIRFEIL  I      N  P LPL GTI AS
Sbjct:   93 IVDNIDKGIPIYGVTTGFGANSNRQTQEGLALQKEMVRFLNCAIFGYQTELSHTLPKSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNVTPILPLRGTITAS 199          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.974e-16
Identity = 53/110 (48.18%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  377 SECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            S  V+  M  GTD+YGVTTGFG +S RR    + L KELIR LNAG  G      + L      AA+LVR  TLLQG SG+R++IL  +         P LPL GTI AS
Sbjct:  100 SNWVLTQMTKGTDTYGVTTGFGATSHRRTNQGAELQKELIRFLNAGVLGKC--PENVLSEDTTRAAMLVRTNTLLQGYSGVRWDILETVEKLLNAWLTPKLPLRGTITAS 207          
The following BLAST results are available for this feature:
BLAST of DY258679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
PAL1_ORYSJ3.913e-2054.46Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL1_POPKI1.942e-1952.68Phenylalanine ammonia-lyase G1 OS=Populus kitakami... [more]
PAL3_PHAVU1.259e-1852.34Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PALY_PINTA9.974e-1648.18Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258679 ID=DY258679; Name=DY258679; organism=Citrus clementina; type=EST; length=1307bp
GTTAAGCTATCTTTTTACGGCTAGGAATATGACAGTAGGTTGAACTGGCA
GTTGCCACTTGCGGCTGTTACTGCCGCTGCTGTGGTTTGTGTTTGCTATG
CTAGGTGCTGGTGATTGCACGCTGCCCCTGTAGAGAGCGTGCAGATAATA
TTGATGAGGTGACTGCTCTACCTTAGACTACGAATATGTGATAGACTTTC
TATTTTGATTGAGAGGATTTATGTCTTTGCTTGGCTCTATTTTTGACCCC
TTTTATGGATTGGGGGGTCTGACGATGAGTTGAAAGCTGTAACATTTGGA
CGCTGACTGCTCTTGTTTCTTCCGCTACCAATGCGAGATCTATCTATATT
CTCTTCTTTAGAGCGGCTGCGCCTGCAGTGAATGCGTGATGGAGAGCATG
CATACTGGCACGGACAGTTACGGCGTTACCACTGGGTTTGGTGTCTCTTC
TCGTCGCAGAGAAGAGATCCGTAGTGCTCTTCATAAAGAGCTTATTAGAC
TTTTGAACGCTGGAACCTTTGGAAACGGAATATAGTCGTCTCACACGCTA
CTTCACTCAGCACCGATGGCTGCCGTGCTTGTGAGGGTTATCACTCTTCT
CCAGGGCTAATCCGGCATCCGATTTGAAATCCTGTACCCGATCCCATGAT
GCTCAATCACCAACTGCCCTCCATGTCTCCCTCTTCTCGGTACAATCGCT
GCTTCTTGGTTATCGGGACGCGCTTTCTTCTTTGCCCGGACGCTCAACGG
GACGGACCCCTTCTCAGGCCTCCCCGGTCTCATGAAAAGAATCTTTGGGG
TCCATTAGACCTTTCAACCCGTCGGGATTTCAGGTTTTTCGGAGGGGGGG
GTCCTCAGGGGGGGGCCTGCCCCTTGGCAATAGAAAAGGCATTTGAATTT
ATTGGTCCTTTCTCTCCTTCTGCTTCTGTTCTCAGGGCCTCACCCTTTGT
CCATCTGATATCTAAAAAATTTTCCCAGCTCTTTGTTCTGCGGGAGGCCT
AGCTGAACGGCATCCTCTATTTCTCCCTCCTCTCCCTTCGCCCCCCCTCT
TCTCACTGGCCCCGTCTTTTCGGCCCCGCTTTTATGGGGCCGGCTGCCGC
GATACGCGGTCAACCATTCCCCCCCCGCCTTTTCCCTCCTTTTTATTCCT
CTTCCCCTCCTTGCTTTCAAGAAACTTTTCTTTGTCCTTTTATTCGCTGT
ACACACCAACTTCTCTCTTCTTCCCTCCCCACACACAACGCTCCGCGGCG
CCCCCGCTCTCCCGCCTCGCCCCCTCCCCCCCTCAAACAAACATGTTATC
CTCACCA
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