DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ECO27 (Spermidine synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ECO24 (Spermidine synthase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOBB (Spermidine synthase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 50/126 (39.68%), Postives = 82/126 (65.08%), Query Frame = 3
Query:  291 MWPGEAH------SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKD 650
            +W  E H      S+KV++ L+  +S +Q + + +S  +GK   LDG++ +TE+DE  Y +MI H+P+ + PN KNVLVIG GDG  +RE++R+ ++EK D+ EID+   +V K++ P   G L++
Sbjct:    3 LWYTEKHTEYVKFSIKVDRELYTEQSKFQRIDILESKEFGKFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTIRELTRYKTIEKIDMVEIDERVVEVCKKYLPKTAGKLEE 128          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_BACSK (Spermidine synthase OS=Bacillus clausii (strain KSM-K16) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 47/113 (41.59%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  312 SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKD 650
            ++K+++ L   K+D+Q + + ++  +G +L+LDG++  TE+DE  Y EM+TH+PL + PNPK+VLV+GGGDG  +REI +H SVEK  + +ID    +  K + P +   L+D
Sbjct:   16 TMKIKRTLHTEKTDFQQLDMVETEEFGNMLLLDGMVMTTEKDEFVYHEMVTHVPLFTHPNPKHVLVVGGGDGGAIREILKHPSVEKATLVDIDGKVIEYSKTYLPTIACALED 128          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SHISS (Spermidine synthase OS=Shigella sonnei (strain Ss046) GN=speE PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.075e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGIVSFCRQYLPNHNAGSYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SHIDS (Spermidine synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=speE PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.075e-22
Identity = 46/103 (44.66%), Postives = 76/103 (73.79%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPD 629
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPN 123          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SHIBS (Spermidine synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=speE PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.075e-22
Identity = 46/103 (44.66%), Postives = 76/103 (73.79%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPD 629
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPN 123          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CITK8 (Spermidine synthase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=speE PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.075e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_YERE8 (Spermidine synthase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=speE PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.322e-22
Identity = 48/112 (42.86%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            VE +L++ K+++Q++++F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    K VL+IGGGDG +LRE+SRH ++E+  + EID    +  +Q+ P+      D P
Sbjct:   21 VENVLYREKTEHQDLVIFENPVLGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_YERPY (Spermidine synthase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=speE PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.950e-22
Identity = 48/112 (42.86%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            VE +L++ K+++Q++++F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    K VL+IGGGDG +LRE+SRH ++E+  + EID    +  +Q+ P+      D P
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDP 132          
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE_ECO273.120e-2242.86Spermidine synthase OS=Escherichia coli O127:H6 (s... [more]
SPEE_ECO243.120e-2242.86Spermidine synthase OS=Escherichia coli O139:H28 (... [more]
SPEE_CLOBB3.120e-2239.68Spermidine synthase OS=Clostridium botulinum (stra... [more]
SPEE_BACSK3.120e-2241.59Spermidine synthase OS=Bacillus clausii (strain KS... [more]
SPEE_SHISS4.075e-2242.86Spermidine synthase OS=Shigella sonnei (strain Ss0... [more]
SPEE_SHIDS4.075e-2244.66Spermidine synthase OS=Shigella dysenteriae seroty... [more]
SPEE_SHIBS4.075e-2244.66Spermidine synthase OS=Shigella boydii serotype 4 ... [more]
SPEE_CITK84.075e-2242.86Spermidine synthase OS=Citrobacter koseri (strain ... [more]
SPEE_YERE85.322e-2242.86Spermidine synthase OS=Yersinia enterocolitica ser... [more]
SPEE_YERPY6.950e-2242.86Spermidine synthase OS=Yersinia pseudotuberculosis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
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