DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_STRU0 (Spermidine synthase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=speE PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.236e-20
Identity = 49/127 (38.58%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKD 650
            WFSE     P    S++ E+ LF GKS++Q++ V  + ++GK+LIL+G +  ++ D   Y EM+ H+P+   PNP+ VL+IGGGDG V + +  +  +++ DI E D+M   V +Q+FP+    L D
Sbjct:    4 WFSESHT--PDVKLSVRTEEQLFVGKSEWQDISVINTPSFGKMLILNGHVLFSDADNFVYNEMVVHVPMAVHPNPEKVLIIGGGDGGVAQVLELYPDIKQIDIVEPDEMLVDVCRQYFPEFASGLDD 128          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_NITOC (Spermidine synthase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.378e-20
Identity = 48/129 (37.21%), Postives = 79/129 (61.24%), Query Frame = 3
Query:  267 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            GWF+E+     G A SL + + L    + YQ + ++Q+ T+G+++++DG I L+ RD   Y EM+ H  L + P+P+ VL+IGGGD   LRE+ +H  VEK    EID+   ++ +++FP++     DP
Sbjct:    7 GWFTEVCKEG-GLAFSLAIREKLHAETTPYQYIEIYQTETFGRLMVIDGFIMLSGRDNFFYHEMMAHPVLFTHPHPQRVLIIGGGDCGTLREVLKHDVVEKVQQVEIDERVTRLAEKYFPELCQSNDDP 134          

HSP 2 Score: 24.2534 bits (51), Expect = 2.378e-20
Identity = 10/28 (35.71%), Postives = 14/28 (50.00%), Query Frame = 1
Query:  652 PRVTLHIGDGFAFVKAGRETPVNVLNLE 735
            PR   H GDG  FV       V+V+ ++
Sbjct:  134 PRAHFHFGDGLRFVAEAPANSVDVIIID 161          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOPH (Spermidine synthase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=speE PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.814e-20
Identity = 43/105 (40.95%), Postives = 75/105 (71.43%), Query Frame = 3
Query:  312 SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFP 626
            S+K+++ L   +S++Q + + ++  YG+VL+LDG + +TE+DE  Y EMITH+P+   PN +NVLVIG GDG  +RE++++ ++E  D+ E+DK   +V +++ P
Sbjct:   16 SIKMKEQLVSVESEFQRIDIIETYEYGRVLVLDGEMMITEKDEFIYHEMITHVPMAVHPNIRNVLVIGAGDGGTIRELTKYDTIEHIDMVEVDKEIVQVCREYMP 120          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_PYRAR (Probable spermidine synthase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=speE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.231e-20
Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 3
Query:  261 IPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            +PG    + P+    +  +KV ++L   +S YQ +MV ++  YG+ LILD  IQ +  DE  Y E + H  + + P P++VL++GGG+G  LRE+ +H +VEK  + +ID    ++ K+F P +     D P
Sbjct:    4 VPGPIVLVEPLSGNTSLLIKVNEVLAVRRSRYQEIMVVETEDYGRALILDDYIQSSYYDEAFYHESLVHPAMVTHPAPRDVLILGGGEGATLREVLKHPTVEKAVMVDIDGDVVELSKRFLPQMHQGAFDSP 135          

HSP 2 Score: 26.9498 bits (58), Expect = 5.231e-20
Identity = 15/42 (35.71%), Postives = 23/42 (54.76%), Query Frame = 1
Query:  652 PRVTLHIGDGFAFVK----AGRETPVNVLNLEIPYD*MVPRQ 765
            PR  + I DGF +VK     GR+  V +++L  PY   + +Q
Sbjct:  135 PRAEVVIEDGFVYVKRALEEGRKFDVVIMDLTDPYSSEIAKQ 176          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_DESAP (Spermidine synthase OS=Desulforudis audaxviator (strain MP104C) GN=speE PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.505e-20
Identity = 48/131 (36.64%), Postives = 78/131 (59.54%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPPGD 662
            WF+E        A S +V + L    + +Q++ V  +  +G+ L+LDG++Q +  DE  Y EMITH+PL + P+P+ VL++GGGDG  LRE+++H SVEK  + EID+      K++ P++      P  +
Sbjct:    4 WFTEKQN--DNFAISYRVNETLHTETTPFQHLAVLDTVPFGRTLVLDGIVQTSVVDEYVYHEMITHVPLNTHPDPRRVLIVGGGDGGTLREVTKHPSVEKATLVEIDERVIAASKKYLPELACGFDSPKAE 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE1_PSEAE (Spermidine synthase 1 OS=Pseudomonas aeruginosa GN=speE1 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 6.505e-20
Identity = 43/113 (38.05%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  291 MWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPD 629
            ++ G      ++ +L + ++++Q++++F+++  G+V+ LDGVIQ TE DE  Y EM+TH+P+ +    + VL+IGGGDG +LRE+++H SVE+  + EID     + K+F P+
Sbjct:    8 LYQGYGQRFSIDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPN 120          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SILST (Spermidine synthase OS=Silicibacter sp. (strain TM1040) GN=speE PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.496e-20
Identity = 46/107 (42.99%), Postives = 70/107 (65.42%), Query Frame = 3
Query:  306 AHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFP 626
            A SL+V ++ +  K+++Q + VFQ+ T+G+VL LD V+Q TE D   Y EM+TH+P+ +    K VL+IGGGDG + RE+ +H+SVE   + EID       K++ P
Sbjct:   16 AQSLRVSEMYYDSKTEHQRLKVFQNGTFGRVLTLDDVVQTTEGDNFIYHEMLTHVPILAHGAAKRVLIIGGGDGGIAREVLKHASVEHVTMVEIDAGVVDFSKEYLP 122          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_THEON (Probable spermidine synthase OS=Thermococcus onnurineus (strain NA1) GN=speE PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.893e-19
Identity = 46/118 (38.98%), Postives = 75/118 (63.56%), Query Frame = 3
Query:  300 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            G     +V++ LF+ ++ YQ + ++++  +GK+L+LDG +QL E  E +Y E + H  + + PNP+ VL+IGGGDG  LRE+ RH +VEK  + EID+M  +V + +     G  +DP
Sbjct:   17 GYGVGFRVKERLFETQTKYQRLELYETEGFGKLLVLDGTVQLVEMGEESYHEPLVHPVMLAHPNPRRVLIIGGGDGGTLREVLRHKTVEKAIMVEIDEMVIEVSRIYMNVARGAFEDP 134          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOBA (Spermidine synthase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=speE PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.893e-19
Identity = 44/118 (37.29%), Postives = 76/118 (64.41%), Query Frame = 3
Query:  291 MWPGEAH------SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFP 626
            +W  E H      S++V++ L+  +S +Q + + +S  +G+   LDG++ +TE+DE  Y +MI H+P+ + PN K VLVIG GDG  +RE++R+ ++EK D+ EID+   +  K++ P
Sbjct:    3 LWYTEKHTEDVKFSIRVDRELYTEQSKFQRIDILESKEFGRFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKKVLVIGAGDGGTIRELTRYKTIEKIDMVEIDESVVEACKKYLP 120          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOAB (Spermidine synthase OS=Clostridium acetobutylicum GN=speE PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.893e-19
Identity = 46/116 (39.66%), Postives = 75/116 (64.66%), Query Frame = 3
Query:  291 MWPGEAH------SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQF 620
            +W  E+H      S++V++ L+  K+ +Q +  F+S T+G    LDG I +TE+DE  Y EMITH+P+   P  K VL++GGGDG   REI R++++EK D+ EID+   ++ +++
Sbjct:    4 LWYSESHADDTKFSIRVKEHLYSEKTPFQQIDFFKSETFGTFFTLDGYIMMTEKDEFIYHEMITHVPMAVNPKIKKVLIVGGGDGGTSREILRYNTIEKVDMVEIDERVVRLCQKY 119          
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE_STRU02.236e-2038.58Spermidine synthase OS=Streptococcus uberis (strai... [more]
SPEE_NITOC2.378e-2037.21Spermidine synthase OS=Nitrosococcus oceani (strai... [more]
SPEE_CLOPH3.814e-2040.95Spermidine synthase OS=Clostridium phytofermentans... [more]
SPEE_PYRAR5.231e-2034.85Probable spermidine synthase OS=Pyrobaculum arsena... [more]
SPEE_DESAP6.505e-2036.64Spermidine synthase OS=Desulforudis audaxviator (s... [more]
SPEE1_PSEAE6.505e-2038.05Spermidine synthase 1 OS=Pseudomonas aeruginosa GN... [more]
SPEE_SILST8.496e-2042.99Spermidine synthase OS=Silicibacter sp. (strain TM... [more]
SPEE_THEON1.893e-1938.98Probable spermidine synthase OS=Thermococcus onnur... [more]
SPEE_CLOBA1.893e-1937.29Spermidine synthase OS=Clostridium botulinum (stra... [more]
SPEE_CLOAB1.893e-1939.66Spermidine synthase OS=Clostridium acetobutylicum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
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