DY258681
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_STRU0 (Spermidine synthase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=speE PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.236e-20 Identity = 49/127 (38.58%), Postives = 79/127 (62.20%), Query Frame = 3 Query: 270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKD 650 WFSE P S++ E+ LF GKS++Q++ V + ++GK+LIL+G + ++ D Y EM+ H+P+ PNP+ VL+IGGGDG V + + + +++ DI E D+M V +Q+FP+ L D Sbjct: 4 WFSESHT--PDVKLSVRTEEQLFVGKSEWQDISVINTPSFGKMLILNGHVLFSDADNFVYNEMVVHVPMAVHPNPEKVLIIGGGDGGVAQVLELYPDIKQIDIVEPDEMLVDVCRQYFPEFASGLDD 128
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_NITOC (Spermidine synthase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=speE PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.378e-20 Identity = 48/129 (37.21%), Postives = 79/129 (61.24%), Query Frame = 3 Query: 267 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653 GWF+E+ G A SL + + L + YQ + ++Q+ T+G+++++DG I L+ RD Y EM+ H L + P+P+ VL+IGGGD LRE+ +H VEK EID+ ++ +++FP++ DP Sbjct: 7 GWFTEVCKEG-GLAFSLAIREKLHAETTPYQYIEIYQTETFGRLMVIDGFIMLSGRDNFFYHEMMAHPVLFTHPHPQRVLIIGGGDCGTLREVLKHDVVEKVQQVEIDERVTRLAEKYFPELCQSNDDP 134 HSP 2 Score: 24.2534 bits (51), Expect = 2.378e-20 Identity = 10/28 (35.71%), Postives = 14/28 (50.00%), Query Frame = 1 Query: 652 PRVTLHIGDGFAFVKAGRETPVNVLNLE 735 PR H GDG FV V+V+ ++ Sbjct: 134 PRAHFHFGDGLRFVAEAPANSVDVIIID 161
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOPH (Spermidine synthase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=speE PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 3.814e-20 Identity = 43/105 (40.95%), Postives = 75/105 (71.43%), Query Frame = 3 Query: 312 SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFP 626 S+K+++ L +S++Q + + ++ YG+VL+LDG + +TE+DE Y EMITH+P+ PN +NVLVIG GDG +RE++++ ++E D+ E+DK +V +++ P Sbjct: 16 SIKMKEQLVSVESEFQRIDIIETYEYGRVLVLDGEMMITEKDEFIYHEMITHVPMAVHPNIRNVLVIGAGDGGTIRELTKYDTIEHIDMVEVDKEIVQVCREYMP 120
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_PYRAR (Probable spermidine synthase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=speE PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.231e-20 Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 3 Query: 261 IPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656 +PG + P+ + +KV ++L +S YQ +MV ++ YG+ LILD IQ + DE Y E + H + + P P++VL++GGG+G LRE+ +H +VEK + +ID ++ K+F P + D P Sbjct: 4 VPGPIVLVEPLSGNTSLLIKVNEVLAVRRSRYQEIMVVETEDYGRALILDDYIQSSYYDEAFYHESLVHPAMVTHPAPRDVLILGGGEGATLREVLKHPTVEKAVMVDIDGDVVELSKRFLPQMHQGAFDSP 135 HSP 2 Score: 26.9498 bits (58), Expect = 5.231e-20 Identity = 15/42 (35.71%), Postives = 23/42 (54.76%), Query Frame = 1 Query: 652 PRVTLHIGDGFAFVK----AGRETPVNVLNLEIPYD*MVPRQ 765 PR + I DGF +VK GR+ V +++L PY + +Q Sbjct: 135 PRAEVVIEDGFVYVKRALEEGRKFDVVIMDLTDPYSSEIAKQ 176
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_DESAP (Spermidine synthase OS=Desulforudis audaxviator (strain MP104C) GN=speE PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 6.505e-20 Identity = 48/131 (36.64%), Postives = 78/131 (59.54%), Query Frame = 3 Query: 270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPPGD 662 WF+E A S +V + L + +Q++ V + +G+ L+LDG++Q + DE Y EMITH+PL + P+P+ VL++GGGDG LRE+++H SVEK + EID+ K++ P++ P + Sbjct: 4 WFTEKQN--DNFAISYRVNETLHTETTPFQHLAVLDTVPFGRTLVLDGIVQTSVVDEYVYHEMITHVPLNTHPDPRRVLIVGGGDGGTLREVTKHPSVEKATLVEIDERVIAASKKYLPELACGFDSPKAE 132
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE1_PSEAE (Spermidine synthase 1 OS=Pseudomonas aeruginosa GN=speE1 PE=3 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 6.505e-20 Identity = 43/113 (38.05%), Postives = 77/113 (68.14%), Query Frame = 3 Query: 291 MWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPD 629 ++ G ++ +L + ++++Q++++F+++ G+V+ LDGVIQ TE DE Y EM+TH+P+ + + VL+IGGGDG +LRE+++H SVE+ + EID + K+F P+ Sbjct: 8 LYQGYGQRFSIDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPN 120
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SILST (Spermidine synthase OS=Silicibacter sp. (strain TM1040) GN=speE PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 8.496e-20 Identity = 46/107 (42.99%), Postives = 70/107 (65.42%), Query Frame = 3 Query: 306 AHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFP 626 A SL+V ++ + K+++Q + VFQ+ T+G+VL LD V+Q TE D Y EM+TH+P+ + K VL+IGGGDG + RE+ +H+SVE + EID K++ P Sbjct: 16 AQSLRVSEMYYDSKTEHQRLKVFQNGTFGRVLTLDDVVQTTEGDNFIYHEMLTHVPILAHGAAKRVLIIGGGDGGIAREVLKHASVEHVTMVEIDAGVVDFSKEYLP 122
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_THEON (Probable spermidine synthase OS=Thermococcus onnurineus (strain NA1) GN=speE PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.893e-19 Identity = 46/118 (38.98%), Postives = 75/118 (63.56%), Query Frame = 3 Query: 300 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653 G +V++ LF+ ++ YQ + ++++ +GK+L+LDG +QL E E +Y E + H + + PNP+ VL+IGGGDG LRE+ RH +VEK + EID+M +V + + G +DP Sbjct: 17 GYGVGFRVKERLFETQTKYQRLELYETEGFGKLLVLDGTVQLVEMGEESYHEPLVHPVMLAHPNPRRVLIIGGGDGGTLREVLRHKTVEKAIMVEIDEMVIEVSRIYMNVARGAFEDP 134
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOBA (Spermidine synthase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=speE PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.893e-19 Identity = 44/118 (37.29%), Postives = 76/118 (64.41%), Query Frame = 3 Query: 291 MWPGEAH------SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFP 626 +W E H S++V++ L+ +S +Q + + +S +G+ LDG++ +TE+DE Y +MI H+P+ + PN K VLVIG GDG +RE++R+ ++EK D+ EID+ + K++ P Sbjct: 3 LWYTEKHTEDVKFSIRVDRELYTEQSKFQRIDILESKEFGRFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKKVLVIGAGDGGTIRELTRYKTIEKIDMVEIDESVVEACKKYLP 120
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOAB (Spermidine synthase OS=Clostridium acetobutylicum GN=speE PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.893e-19 Identity = 46/116 (39.66%), Postives = 75/116 (64.66%), Query Frame = 3 Query: 291 MWPGEAH------SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQF 620 +W E+H S++V++ L+ K+ +Q + F+S T+G LDG I +TE+DE Y EMITH+P+ P K VL++GGGDG REI R++++EK D+ EID+ ++ +++ Sbjct: 4 LWYSESHADDTKFSIRVKEHLYSEKTPFQQIDFFKSETFGTFFTLDGYIMMTEKDEFIYHEMITHVPMAVNPKIKKVLIVGGGDGGTSREILRYNTIEKVDMVEIDERVVRLCQKY 119 The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 203
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bpback to top |