DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SODGM (Spermidine synthase OS=Sodalis glossinidius (strain morsitans) GN=speE PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.472e-19
Identity = 45/102 (44.12%), Postives = 69/102 (67.65%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFP 626
            V+ +L++  +  Q++++F+++  G+V+ LDGV+Q TERDE  Y EM+ H+PL +    K VL+IGGGDG +LRE+SRH  VE+  + EID       KQ+ P
Sbjct:   21 VDNLLYRDTTGQQDLVIFENAALGRVMALDGVVQTTERDEFIYHEMMAHVPLIAHGGAKKVLIIGGGDGGMLREVSRHPGVEQITMVEIDAGVVTFCKQYLP 122          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_HALHL (Spermidine synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=speE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.217e-19
Identity = 47/122 (38.52%), Postives = 77/122 (63.11%), Query Frame = 3
Query:  267 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDV 632
            GWF+E      G A SL +++ + + +S+YQ++ V+++  +G++L+LDG + LTERDE  Y EM+ H  L +   P+ V ++GGGD  +LRE+ RH  VE     E+D+   +V +  FPD+
Sbjct:    4 GWFTEAVED-EGVAFSLAIDERVHEEQSEYQHIEVYRTRRWGRLLVLDGCVMLTERDEFLYHEMMAHPALFAHREPRRVAIVGGGDCGILREVLRHPGVEHTLQVELDERVTRVAETHFPDL 124          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_THET8 (Spermidine synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=speE PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.507e-19
Identity = 48/123 (39.02%), Postives = 75/123 (60.98%), Query Frame = 3
Query:  297 PGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPPGDP 665
            P E    ++E+++  GK+ +Q+  +F+S  +GKVLILD  +Q TERDE  Y E + H  + + P PK VL++GGG+G  LRE+ +H +VEK  + +ID    +V K+  P+   W +    DP
Sbjct:   13 PYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPE---WHQGAFDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_THET2 (Spermidine synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=speE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.507e-19
Identity = 48/123 (39.02%), Postives = 75/123 (60.98%), Query Frame = 3
Query:  297 PGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPPGDP 665
            P E    ++E+++  GK+ +Q+  +F+S  +GKVLILD  +Q TERDE  Y E + H  + + P PK VL++GGG+G  LRE+ +H +VEK  + +ID    +V K+  P+   W +    DP
Sbjct:   13 PYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPE---WHQGAFDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SULAC (Probable spermidine synthase OS=Sulfolobus acidocaldarius GN=speE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.689e-18
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQ 617
            W   +    P E H+  +++IL + +S++Q V++ +   +GK LI+DG IQ T  DE  Y E + H  L S+ +P+N+L++GGG+G  LRE  R+ SV K  + +ID +  K  KQ
Sbjct:    4 WTWHLEWQTPQEFHAHAIKRILIEERSEFQRVILAELFRFGKALIIDGKIQSTLADEFIYHESLVHPLLISLEDPENILILGGGEGATLREALRYKSVRKVTMVDIDPVVIKFAKQ 119          

HSP 2 Score: 22.7126 bits (47), Expect = 2.689e-18
Identity = 10/18 (55.56%), Postives = 11/18 (61.11%), Query Frame = 1
Query:  655 RVTLHIGDGFAFVKAGRE 708
            R  L IGDG+ FVK   E
Sbjct:  133 RTNLIIGDGYKFVKETNE 150          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_PYRKO (Probable spermidine synthase OS=Pyrococcus kodakaraensis GN=speE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.733e-18
Identity = 43/98 (43.88%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  300 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDK 593
            G     KV++ LF+ +++YQ + ++++  +GK+L+LDG +QL E  E +Y E++ H  + + PNP+ VLVIGGGDG  LRE+ RH +VEK  + EID+
Sbjct:   17 GYGVGFKVKRRLFETQTEYQRLEIYETEGFGKLLVLDGTVQLVEVGEESYHEVLVHPVMLAHPNPRKVLVIGGGDGGTLREVLRHDTVEKAIMVEIDE 114          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_METCA (Spermidine synthase OS=Methylococcus capsulatus GN=speE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.570e-18
Identity = 48/132 (36.36%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPPGDP 665
            WF+E  P   G A SLK+   L + ++ +Q + ++ + ++GK++++DG   +++RD   Y EM+TH  L + P PK V +IGGGD   LRE+ +HS VEK    +ID+   ++ +++FP+    L +  GDP
Sbjct:    7 WFTESYPD-NGSALSLKIRAKLHEEQTPFQRIEIYDTESFGKLMVIDGCTMVSDRDNFLYHEMMTHPVLYTHPAPKTVWIIGGGDCGSLREVLKHSEVEKAVQIDIDERVTRLAERYFPE----LCEANGDP 133          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_PROMS (Spermidine synthase OS=Prochlorococcus marinus (strain AS9601) GN=speE PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.356e-17
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = 3
Query:  327 KILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPG 638
            KILF+  S YQ ++V ++  YGK L+LDG    + +DE  Y E + H  L SI    NVL+IGGGDG  +RE  ++S + K D+ EID+   K+ K+F  ++ G
Sbjct:   22 KILFKKTSKYQEIIVIENEYYGKALMLDGCWMTSLKDEKYYHECLVHPALSSIDEKSNVLIIGGGDGGTVRECVKYSKISKIDLVEIDEEVIKISKKFLKEIAG 125          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ALHEH (Spermidine synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=speE PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.356e-17
Identity = 43/128 (33.59%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            WF+E+     G A SL+V + L + ++ +Q++ V+++  +G++L++DG + LT RD   Y EM++H  L + P+P+ V +IGGGD  +LRE+ +H  +E     +ID    +  +++FP++     DP
Sbjct:    7 WFTEVLEE-EGMAFSLRVREKLHEERTAFQHIEVYETEAWGRLLVIDGCVMLTSRDNFVYHEMMSHPALFTHPDPRRVAIIGGGDCGMLREVLKHPGIESVVQVDIDAGVTRAAERYFPELTEANDDP 133          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_THISH (Spermidine synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=speE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.772e-17
Identity = 43/128 (33.59%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            WF+EI       A SL++++ L + ++ +Q + ++++  +G ++++DG + LT+RD   Y EM++H  L S  +PKNVL+IGGGD   LRE+ +H  V+     +ID+   ++ +++FP++     DP
Sbjct:    7 WFTEIHQ---DTAFSLRMKEKLHEEQTPFQKIEIYETEGFGTLMVIDGCVMLTDRDNFIYHEMMSHPVLYSHSDPKNVLIIGGGDCGTLREVLKHPEVKSATQVDIDERVTRLAEKYFPELCDSNDDP 131          
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE_SODGM2.472e-1944.12Spermidine synthase OS=Sodalis glossinidius (strai... [more]
SPEE_HALHL4.217e-1938.52Spermidine synthase OS=Halorhodospira halophila (s... [more]
SPEE_THET85.507e-1939.02Spermidine synthase OS=Thermus thermophilus (strai... [more]
SPEE_THET25.507e-1939.02Spermidine synthase OS=Thermus thermophilus (strai... [more]
SPEE_SULAC2.689e-1837.93Probable spermidine synthase OS=Sulfolobus acidoca... [more]
SPEE_PYRKO2.733e-1843.88Probable spermidine synthase OS=Pyrococcus kodakar... [more]
SPEE_METCA3.570e-1836.36Spermidine synthase OS=Methylococcus capsulatus GN... [more]
SPEE_PROMS1.356e-1742.31Spermidine synthase OS=Prochlorococcus marinus (st... [more]
SPEE_ALHEH1.356e-1733.59Spermidine synthase OS=Alkalilimnicola ehrlichei (... [more]
SPEE_THISH1.772e-1733.59Spermidine synthase OS=Thioalkalivibrio sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
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