DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_AERPE (Probable spermidine synthase OS=Aeropyrum pernix GN=speE PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.148e-16
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPPGDP 665
            WF E   + P  A    +E ++FQG+S +Q + V + S  GKVL+LDG  Q +E DE  Y E + H  +    +P+ VL++GGG+G  LRE+ +H SVEK  + +ID+    V ++   +   W +    DP
Sbjct:   15 WFLEW--LTPDRATLKHIEDVIFQGRSRFQEIAVVRVSGEGKVLVLDGKTQSSESDEFMYHEALVHPAMILHGSPRKVLILGGGEGATLREVLKHRSVEKAVMVDIDETVVNVAREHLRE---WHRGAFDDP 141          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_XANC5 (Spermidine synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=speE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.959e-16
Identity = 39/111 (35.14%), Postives = 70/111 (63.06%), Query Frame = 3
Query:  300 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDV 632
            G A   ++   L + +S +Q + ++Q++ +GK++++DG + LT RD   Y EMI+H  L + P PK V++IGGGD   LRE+ +H  VE     +ID+   ++ +++FP++
Sbjct:   16 GSAIGFRISGKLDEVQSPFQKIEIYQTTDWGKLMLIDGAVMLTSRDNFFYHEMISHPALFTHPAPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPEL 126          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_XANAC (Spermidine synthase OS=Xanthomonas axonopodis pv. citri GN=speE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.959e-16
Identity = 39/111 (35.14%), Postives = 70/111 (63.06%), Query Frame = 3
Query:  300 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDV 632
            G A   ++   L + +S +Q + ++Q++ +GK++++DG + LT RD   Y EMI+H  L + P PK V++IGGGD   LRE+ +H  VE     +ID+   ++ +++FP++
Sbjct:   16 GSAIGFRISGKLDEVQSPFQKIEIYQTTDWGKLMLIDGAVMLTSRDNFFYHEMISHPALFTHPAPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPEL 126          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SULSO (Probable spermidine synthase OS=Sulfolobus solfataricus GN=speE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.959e-16
Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  267 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPN-PKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQF 620
            GW   +    P E H   +EK+L + K+ YQ+V + + + +GK LI+DG +Q T  DE  Y E++ H  L S+   PK+VL++GGG+G  LRE+ ++ SVEK  + +ID+   +  K++
Sbjct:    3 GWHWLLEWQTPYEFHGHLIEKVLAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLTKPPKSVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKY 121          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_XANOR (Spermidine synthase OS=Xanthomonas oryzae pv. oryzae GN=speE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.558e-16
Identity = 39/111 (35.14%), Postives = 70/111 (63.06%), Query Frame = 3
Query:  300 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDV 632
            G A   ++   L + +S +Q + ++Q++ +GK++++DG + LT RD   Y EMI+H  L + P PK V++IGGGD   LRE+ +H  VE     +ID+   ++ +++FP++
Sbjct:   16 GSAIGFRISGKLDEVQSLFQKIEIYQTTDWGKLMLIDGAVMLTSRDNFFYHEMISHPALFTHPTPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPEL 126          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_XANOP (Spermidine synthase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=speE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.558e-16
Identity = 39/111 (35.14%), Postives = 70/111 (63.06%), Query Frame = 3
Query:  300 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDV 632
            G A   ++   L + +S +Q + ++Q++ +GK++++DG + LT RD   Y EMI+H  L + P PK V++IGGGD   LRE+ +H  VE     +ID+   ++ +++FP++
Sbjct:   16 GSAIGFRISGKLDEVQSLFQKIEIYQTTDWGKLMLIDGAVMLTSRDNFFYHEMISHPALFTHPTPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPEL 126          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_XANOM (Spermidine synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=speE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.558e-16
Identity = 39/111 (35.14%), Postives = 70/111 (63.06%), Query Frame = 3
Query:  300 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDV 632
            G A   ++   L + +S +Q + ++Q++ +GK++++DG + LT RD   Y EMI+H  L + P PK V++IGGGD   LRE+ +H  VE     +ID+   ++ +++FP++
Sbjct:   16 GSAIGFRISGKLDEVQSLFQKIEIYQTTDWGKLMLIDGAVMLTSRDNFFYHEMISHPALFTHPTPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPEL 126          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_PROMP (Spermidine synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=speE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.558e-16
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  327 KILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPG 638
            K+L +  S YQ +++ ++  YGK L+LDG    + RDE  Y E + H  L SI    ++L+IGGGDG   RE  ++S V K D+ EID+   KV K F  ++ G
Sbjct:   22 KVLLKKNSKYQEILIIETDFYGKALMLDGCWMTSVRDEKYYHECLVHPALSSIDKKSHILIIGGGDGGTARECLKYSQVSKIDLVEIDEEVIKVSKTFLKEIGG 125          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_PROM2 (Spermidine synthase OS=Prochlorococcus marinus (strain MIT 9215) GN=speE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.558e-16
Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  327 KILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPG 638
            KIL +  S YQ +++ ++  YGK L+LDG    + +DE  Y E + H  L SI    N+L+IGGGDG  +RE  ++S + K D+ EID+   K+ K+F  ++ G
Sbjct:   22 KILIKKTSKYQEIILIENEYYGKALMLDGCWMTSLKDEKYYHECLVHPALSSIEEKSNILIIGGGDGGTVRECVKYSQISKIDLVEIDEEVIKISKKFLKEIGG 125          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_PROM0 (Spermidine synthase OS=Prochlorococcus marinus (strain MIT 9301) GN=speE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.341e-16
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  330 ILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPG 638
            +L + KS YQ ++V ++  YG+ L+LDG    + +DE  Y E + H  L SI    NVL+IGGGDG  +RE  +++ + K D+ EID+   K+ K+F  ++ G
Sbjct:   23 VLIKQKSQYQEIIVIENEYYGRALMLDGCWMTSLKDEKYYHECLVHPALSSIDEKSNVLIIGGGDGGTVRECVKYAQISKIDLVEIDEEVIKISKKFLKEIGG 125          
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE_AERPE1.148e-1636.36Probable spermidine synthase OS=Aeropyrum pernix G... [more]
SPEE_XANC51.959e-1635.14Spermidine synthase OS=Xanthomonas campestris pv. ... [more]
SPEE_XANAC1.959e-1635.14Spermidine synthase OS=Xanthomonas axonopodis pv. ... [more]
SPEE_SULSO1.959e-1637.82Probable spermidine synthase OS=Sulfolobus solfata... [more]
SPEE_XANOR2.558e-1635.14Spermidine synthase OS=Xanthomonas oryzae pv. oryz... [more]
SPEE_XANOP2.558e-1635.14Spermidine synthase OS=Xanthomonas oryzae pv. oryz... [more]
SPEE_XANOM2.558e-1635.14Spermidine synthase OS=Xanthomonas oryzae pv. oryz... [more]
SPEE_PROMP2.558e-1640.38Spermidine synthase OS=Prochlorococcus marinus sub... [more]
SPEE_PROM22.558e-1639.42Spermidine synthase OS=Prochlorococcus marinus (st... [more]
SPEE_PROM03.341e-1638.83Spermidine synthase OS=Prochlorococcus marinus (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
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