DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_PYRCJ (Probable spermidine synthase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=speE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.364e-16
Identity = 44/132 (33.33%), Postives = 76/132 (57.58%), Query Frame = 3
Query:  261 IPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDV-PGWLKDP 653
            +PG  + I P+    +  +K+  I    KS YQ +++  +  YG+VLILD  IQ +  DE  Y E + H  + + PNP++VL++GGG+G  LRE  +H +V++  + +ID+   ++ + + P +  G   DP
Sbjct:    4 VPGPITLIEPLSGNTSLLIKINAIHSVKKSPYQEIIIADTEDYGRVLILDDYIQSSYVDEQYYHESLVHPAMATHPNPRDVLILGGGEGATLREALKHGTVKRAVMVDIDRDVVELSRAYLPQMHQGAFDDP 135          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_XANCP (Spermidine synthase OS=Xanthomonas campestris pv. campestris GN=speE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.270e-15
Identity = 39/111 (35.14%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  300 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDV 632
            G A   ++   L + +S +Q + ++Q++ +GK++I+DG + LT RD   Y EMI+H  L +   PK V++IGGGD   LRE+ +H  VE     +ID+   ++ +++FP++
Sbjct:   16 GSAIGYRISGKLDEVQSPFQKIEIYQTTDWGKLMIIDGAVMLTSRDNFFYHEMISHPALFTHAAPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPEL 126          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_XANCB (Spermidine synthase OS=Xanthomonas campestris pv. campestris (strain B100) GN=speE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.270e-15
Identity = 39/111 (35.14%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  300 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDV 632
            G A   ++   L + +S +Q + ++Q++ +GK++I+DG + LT RD   Y EMI+H  L +   PK V++IGGGD   LRE+ +H  VE     +ID+   ++ +++FP++
Sbjct:   16 GSAIGYRISGKLDEVQSPFQKIEIYQTTDWGKLMIIDGAVMLTSRDNFFYHEMISHPALFTHAAPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPEL 126          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_XANC8 (Spermidine synthase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=speE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.270e-15
Identity = 39/111 (35.14%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  300 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDV 632
            G A   ++   L + +S +Q + ++Q++ +GK++I+DG + LT RD   Y EMI+H  L +   PK V++IGGGD   LRE+ +H  VE     +ID+   ++ +++FP++
Sbjct:   16 GSAIGYRISGKLDEVQSPFQKIEIYQTTDWGKLMIIDGAVMLTSRDNFFYHEMISHPALFTHAAPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPEL 126          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_PROM5 (Spermidine synthase OS=Prochlorococcus marinus (strain MIT 9515) GN=speE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.658e-15
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  327 KILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPG 638
            K+L +  S +Q +++ +S  YGK L+LD     + RDE  Y E + H  L SI     +L+IGGGDG   RE  ++S VEK D+ EID+   K  K+F  ++ G
Sbjct:   22 KVLLKKNSKFQEILIIESDYYGKALMLDRCWMTSMRDEKYYHECLVHPALSSIKEKSRILIIGGGDGGTARECLKYSQVEKIDLVEIDEEVIKASKKFLQEIGG 125          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_PROM9 (Spermidine synthase OS=Prochlorococcus marinus (strain MIT 9312) GN=speE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.828e-15
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  327 KILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPG 638
            +IL +  S YQ ++V ++  YG+ L+LDG    + +DE  Y E + H  L SI    NVL+IGGGDG   RE  ++  + K D+ EID+   K+ K+F  ++ G
Sbjct:   22 EILIKQNSKYQEIIVIENEYYGRALMLDGCWMTSLKDEKYYHECLVHPALSSIDEKSNVLIIGGGDGGTARECVKYPQISKIDLVEIDEEVIKISKKFLKEIGG 125          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_THEVO (Probable spermidine synthase OS=Thermoplasma volcanium GN=speE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.694e-15
Identity = 52/132 (39.39%), Postives = 71/132 (53.79%), Query Frame = 3
Query:  258 VIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPN-PKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKD 650
            +I  WFSE          S +V   L   K+DYQ + +F +  +GK+L +DG +QLTERDE  Y E+IT +P     N P++ LVIGGGDG   R +     + K    EID    +V K+FFPD+     D
Sbjct:    3 LIENWFSERYS--DNLQLSFRVSDQLLSIKTDYQRIDLFDTYDFGKLLAIDGTVQLTERDEYIYHELITMIPYHMTKNPPQSALVIGGGDGGAARRL-LDLGLNKIVNVEIDGQVVEVSKRFFPDLSSAFTD 131          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_THENV (Probable spermidine synthase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=speE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.694e-15
Identity = 43/131 (32.82%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  264 PGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDV-PGWLKDP 653
            PG  S I P+    A  +K+  +    +S YQ ++V  +  +G+ LILD  IQ +  DE  Y E + H  + + P+P +VL++GGG+G  LRE+ +H +V++  + +ID    +V +++ P +  G   DP
Sbjct:    5 PGPISLIEPLSGNSALLVKINAVYVVKRSRYQEIVVADTEDFGRALILDDYIQSSYYDEVYYHESLVHPAMSTHPSPADVLILGGGEGATLREVLKHRTVKRAVMVDIDGDVVEVARRYLPQMHQGAFDDP 135          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_XYLFT (Spermidine synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=speE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.824e-15
Identity = 43/128 (33.59%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            WF+E      G A   +V   L + +S +Q + ++ S+ +GK++++DG + LT RD   Y EMI+H  L +   PK V++IGGGD   LRE+ +H  +E+    +ID+   ++ ++ FP++     DP
Sbjct:    7 WFTEHFQT-TGSAIGFRVTGKLDEVQSPFQKIEIYNSTDWGKLMVIDGALMLTSRDNFLYHEMISHPALFTHTAPKCVVIIGGGDCGTLREVLKHPDIEQVTQCDIDEQVTRMAEKHFPELCTSNNDP 133          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_XYLFM (Spermidine synthase OS=Xylella fastidiosa (strain M12) GN=speE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.824e-15
Identity = 43/128 (33.59%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            WF+E      G A   +V   L + +S +Q + ++ S+ +GK++++DG + LT RD   Y EMI+H  L +   PK V++IGGGD   LRE+ +H  +E+    +ID+   ++ ++ FP++     DP
Sbjct:    7 WFTEHFQA-TGSAIGFRVTGKLDEVQSPFQKIEIYNSTDWGKLMVIDGALMLTSRDNFIYHEMISHPALFTHTAPKCVVIIGGGDCGTLREVLKHPDIEQVTQCDIDEQVTRMAEKHFPELCTSNNDP 133          
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE_PYRCJ4.364e-1633.33Probable spermidine synthase OS=Pyrobaculum calidi... [more]
SPEE_XANCP1.270e-1535.14Spermidine synthase OS=Xanthomonas campestris pv. ... [more]
SPEE_XANCB1.270e-1535.14Spermidine synthase OS=Xanthomonas campestris pv. ... [more]
SPEE_XANC81.270e-1535.14Spermidine synthase OS=Xanthomonas campestris pv. ... [more]
SPEE_PROM51.658e-1539.42Spermidine synthase OS=Prochlorococcus marinus (st... [more]
SPEE_PROM92.828e-1538.46Spermidine synthase OS=Prochlorococcus marinus (st... [more]
SPEE_THEVO3.694e-1539.39Probable spermidine synthase OS=Thermoplasma volca... [more]
SPEE_THENV3.694e-1532.82Probable spermidine synthase OS=Thermoproteus neut... [more]
SPEE_XYLFT4.824e-1533.59Spermidine synthase OS=Xylella fastidiosa (strain ... [more]
SPEE_XYLFM4.824e-1533.59Spermidine synthase OS=Xylella fastidiosa (strain ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
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