DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258681_ssr961 microsatellite DY258681_ssr961:961..970. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258681_ssr986 microsatellite DY258681_ssr986:986..997. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14320 contig Ccv1_Contig14320:62..1344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ERWCT (Spermidine synthase OS=Erwinia carotovora subsp. atroseptica GN=speE PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.685e-23
Identity = 51/112 (45.54%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+++L+  K+D+Q++++F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL S  N K VL+IGGGDG +LRE+SRH  VE+  + EID    +  +Q+ P+      D P
Sbjct:   21 VDRVLYHEKTDHQDLIIFENDALGRVMALDGVVQTTERDEFIYHEMLTHVPLLSHGNAKRVLIIGGGDGGMLREVSRHHGVEQITMVEIDAGVVEFCRQYLPNHSAGSYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ANATD (Spermidine synthase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=speE PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.685e-23
Identity = 51/127 (40.16%), Postives = 80/127 (62.99%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKD 650
            WF+E     P    + K+ K ++  K+ YQ++ + ++  +G++L+LDG +Q T  DE  Y E+I+H+PL + PNPK V VIGGGDG V+REI +H  VEK  + EID+   +  K++ P++   L D
Sbjct:    7 WFTE--QQTPDLGFTCKITKTIYTAKTQYQDLAILETKQFGRMLVLDGAVQTTIADEFCYHELISHVPLFTHPNPKKVAVIGGGDGGVIREILKHDEVEKAYLIEIDREVIEASKKYLPEISCALDD 131          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_PECCP (Spermidine synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=speE PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.286e-23
Identity = 51/112 (45.54%), Postives = 76/112 (67.86%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+++L+  K+D+Q++++F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL S  N K VL+IGGGDG +LRE+SRH  VE   + EID    +  +Q+ P+      D P
Sbjct:   21 VDRVLYHEKTDHQDLIIFENDALGRVMALDGVVQTTERDEFIYHEMLTHVPLLSHGNAKRVLIIGGGDGGMLREVSRHHGVEHITMVEIDAGVVEFCRQYLPNHSAGSYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_METJA (Probable spermidine synthase OS=Methanocaldococcus jannaschii GN=speE PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.286e-23
Identity = 53/119 (44.54%), Postives = 77/119 (64.71%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFP 626
            WF+E        A S++V+ IL++ KS +Q + +  +  +GK LILD   Q TERDE  Y E+I+H+PL + PNP+NVLVIGGGDG  +RE+ +H SVE  D  E+D+   +  K++ P
Sbjct:   12 WFTEYHNN--NVALSVRVKDILYREKSGFQEIEIIDTYDFGKALILDNTFQTTERDEFIYHELISHIPLFTHPNPRNVLVIGGGDGGTVREVVKHKSVETVDFVELDEKVIEACKKYMP 128          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CALS8 (Spermidine synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=speE PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.286e-23
Identity = 52/127 (40.94%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKD 650
            WF+E     P    + K+ K ++  K+ YQ++ + ++  +GK+L+LDG +Q T  DE  Y E+I H+PL + PNPK V VIGGGDG V+REI +H  VEK  + EID+   +  K++ P++   L D
Sbjct:    7 WFTE--QQTPDLGFTCKITKTIYTAKTKYQDLAILETKQFGKMLVLDGAVQTTIVDEFCYHELIAHVPLFTHPNPKKVAVIGGGDGGVIREILKHEEVEKAYLIEIDQEVIEASKKYLPEISCALDD 131          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_BUCAP (Spermidine synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=speE PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.286e-23
Identity = 49/102 (48.04%), Postives = 73/102 (71.57%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFP 626
            ++KIL+Q K+ Y ++++FQ+S  G+++ +DGV+Q TE+DE  Y EM+TH+P+      KNVL++GGGDG +LREI RH S+E   + EID     + KQFFP
Sbjct:   21 IDKILYQKKNKYHDIIIFQNSIMGRIMAIDGVVQTTEKDEFIYHEMLTHVPIFYHGLIKNVLIVGGGDGGILREICRHKSIENITMVEIDLNIIDLCKQFFP 122          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_THEPX (Spermidine synthase OS=Thermoanaerobacter sp. (strain X514) GN=speE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.288e-23
Identity = 50/114 (43.86%), Postives = 77/114 (67.54%), Query Frame = 3
Query:  312 SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            SLKV++ L   K+ YQ++ +  +  +G+VL LDG++Q TE+DE  Y EMI H+PL +  NPK+VL++GGGDG  +RE+ +H SVE+  + EID+   +  K++ P +   L DP
Sbjct:   16 SLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAEIDEAVVRNSKKYLPTISQALDDP 129          

HSP 2 Score: 21.1718 bits (43), Expect = 7.288e-23
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  652 PRVTLHIGDGFAFV 693
            PRV + IGDG  +V
Sbjct:  129 PRVEIMIGDGIKYV 142          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_THEP3 (Spermidine synthase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=speE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.288e-23
Identity = 50/114 (43.86%), Postives = 77/114 (67.54%), Query Frame = 3
Query:  312 SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            SLKV++ L   K+ YQ++ +  +  +G+VL LDG++Q TE+DE  Y EMI H+PL +  NPK+VL++GGGDG  +RE+ +H SVE+  + EID+   +  K++ P +   L DP
Sbjct:   16 SLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAEIDEAVVRNSKKYLPTISQALDDP 129          

HSP 2 Score: 21.1718 bits (43), Expect = 7.288e-23
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  652 PRVTLHIGDGFAFV 693
            PRV + IGDG  +V
Sbjct:  129 PRVEIMIGDGIKYV 142          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_STRR6 (Spermidine synthase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=speE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.072e-22
Identity = 53/128 (41.41%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            WFSE+    P    SL+  K L+ GKS++Q++ V  +  +GK+LIL+G +  ++ D+  Y EM  H+P+   PNPK VLVIGGGDG V + ++ +  +E+ DI E D+M  +V +++FPD    L DP
Sbjct:    4 WFSEVHT--PDVKLSLRTAKQLYAGKSEWQDIEVLDTPAFGKILILNGHVLFSDADDFVYNEMTVHVPMAVHPNPKKVLVIGGGDGGVAQVLTLYPELEQIDIVEPDEMLVEVCREYFPDFAAGLDDP 129          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_STRPN (Spermidine synthase OS=Streptococcus pneumoniae GN=speE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.072e-22
Identity = 53/128 (41.41%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            WFSE+    P    SL+  K L+ GKS++Q++ V  +  +GK+LIL+G +  ++ D+  Y EM  H+P+   PNPK VLVIGGGDG V + ++ +  +E+ DI E D+M  +V +++FPD    L DP
Sbjct:    4 WFSEVHT--PDVKLSLRTAKQLYAGKSEWQDIEVLDTPAFGKILILNGHVLFSDADDFVYNEMTVHVPMAVHPNPKKVLVIGGGDGGVAQVLTLYPELEQIDIVEPDEMLVEVCREYFPDFAAGLDDP 129          
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE_ERWCT3.685e-2345.54Spermidine synthase OS=Erwinia carotovora subsp. a... [more]
SPEE_ANATD3.685e-2340.16Spermidine synthase OS=Anaerocellum thermophilum (... [more]
SPEE_PECCP6.286e-2345.54Spermidine synthase OS=Pectobacterium carotovorum ... [more]
SPEE_METJA6.286e-2344.54Probable spermidine synthase OS=Methanocaldococcus... [more]
SPEE_CALS86.286e-2340.94Spermidine synthase OS=Caldicellulosiruptor saccha... [more]
SPEE_BUCAP6.286e-2348.04Spermidine synthase OS=Buchnera aphidicola subsp. ... [more]
SPEE_THEPX7.288e-2343.86Spermidine synthase OS=Thermoanaerobacter sp. (str... [more]
SPEE_THEP37.288e-2343.86Spermidine synthase OS=Thermoanaerobacter pseudeth... [more]
SPEE_STRR61.072e-2241.41Spermidine synthase OS=Streptococcus pneumoniae (s... [more]
SPEE_STRPN1.072e-2241.41Spermidine synthase OS=Streptococcus pneumoniae GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
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