DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258681_ssr961 microsatellite DY258681_ssr961:961..970. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258681_ssr986 microsatellite DY258681_ssr986:986..997. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14320 contig Ccv1_Contig14320:62..1344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SALPB (Spermidine synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SALPA (Spermidine synthase OS=Salmonella paratyphi A GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SALNS (Spermidine synthase OS=Salmonella newport (strain SL254) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SALHS (Spermidine synthase OS=Salmonella heidelberg (strain SL476) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SALG2 (Spermidine synthase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SALEP (Spermidine synthase OS=Salmonella enteritidis PT4 (strain P125109) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SALDC (Spermidine synthase OS=Salmonella dublin (strain CT_02021853) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SALCH (Spermidine synthase OS=Salmonella choleraesuis GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SALAR (Spermidine synthase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SALA4 (Spermidine synthase OS=Salmonella agona (strain SL483) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE_SALPB3.120e-2240.16Spermidine synthase OS=Salmonella paratyphi B (str... [more]
SPEE_SALPA3.120e-2240.16Spermidine synthase OS=Salmonella paratyphi A GN=s... [more]
SPEE_SALNS3.120e-2240.16Spermidine synthase OS=Salmonella newport (strain ... [more]
SPEE_SALHS3.120e-2240.16Spermidine synthase OS=Salmonella heidelberg (stra... [more]
SPEE_SALG23.120e-2240.16Spermidine synthase OS=Salmonella gallinarum (stra... [more]
SPEE_SALEP3.120e-2240.16Spermidine synthase OS=Salmonella enteritidis PT4 ... [more]
SPEE_SALDC3.120e-2240.16Spermidine synthase OS=Salmonella dublin (strain C... [more]
SPEE_SALCH3.120e-2240.16Spermidine synthase OS=Salmonella choleraesuis GN=... [more]
SPEE_SALAR3.120e-2240.16Spermidine synthase OS=Salmonella arizonae (strain... [more]
SPEE_SALA43.120e-2240.16Spermidine synthase OS=Salmonella agona (strain SL... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
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