DY258685

Overview
NameDY258685
Unique NameDY258685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1191
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14207 contig Ccv1_Contig14207:554..1743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258685 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 5.307e-37
Identity = 78/142 (54.93%), Postives = 100/142 (70.42%), Query Frame = 3
Query:   27 TAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQ-DGTSHYMKGFVLLLCYFVIGACFFVSNRP 449
            TA ++LLS ++V  IE  S SW I +SFIS+ILLPIVGNAAEHAGAI+FA K+KLD+SLGVA+GS+ QI++F VP CV+I W+MG  MDLN  L ET +            Q +GTS+Y K  +L+LCY ++ A FFV   P
Sbjct:  304 TAWVSLLSGYLVDAIEGTSVSWKIPISFISVILLPIVGNAAEHAGAIMFAMKDKLDLSLGVAIGSSIQISMFAVPFCVVIGWMMGAQMDLNLQLFETATLLITVIVVAFFLQLEGTSNYFKRLMLILCYLIVAASFFVHEDP 445          
BLAST of DY258685 vs. ExPASy Swiss-Prot
Match: CAX4_ORYSJ (Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.707e-35
Identity = 71/140 (50.71%), Postives = 100/140 (71.43%), Query Frame = 3
Query:   30 AIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRP 449
            A I++LS ++V  I+ AS +W I V+FIS++LLP+VGN+A HA A++FA K+KLDISLGVA+GS+ QI++F +P CV++ W+MG  MDLNF+L ET S            QDGTS+ +KG +L LCY ++ A F+V   P
Sbjct:  297 AWISMLSYYLVDAIDGASKAWNIPVAFISVVLLPVVGNSAGHANAVMFAVKDKLDISLGVAIGSSIQISMFGIPFCVVMGWMMGKPMDLNFHLFETASLLTTVLVVAFLLQDGTSNCVKGLMLFLCYLIVAASFYVHADP 436          
BLAST of DY258685 vs. ExPASy Swiss-Prot
Match: VCX1_YEAST (Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae GN=VCX1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.881e-28
Identity = 61/155 (39.35%), Postives = 99/155 (63.87%), Query Frame = 3
Query:   15 LVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFV--SNRPLDSDQNGV 473
            L+G T II+  ++F+VGTI++   S G+S +FI +I++PIVGNAAEH  +++ A K+K+D++LGVA+GS+ Q+A+FV P  V++ W++ + M LNF+  ET +             DG S++++G + L  Y +I   FF     + LDS  N +
Sbjct:  257 LLGTTVIISFCADFLVGTIDNVVESTGLSKTFIGLIVIPIVGNAAEHVTSVLVAMKDKMDLALGVAIGSSLQVALFVTPFMVLVGWMIDVPMTLNFSTFETATLFIAVFLSNYLILDGESNWLEGVMSLAMYILIAMAFFYYPDEKTLDSIGNSL 411          
BLAST of DY258685 vs. ExPASy Swiss-Prot
Match: VCX1_SCHPO (Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe GN=vcx1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.148e-23
Identity = 52/142 (36.62%), Postives = 88/142 (61.97%), Query Frame = 3
Query:    9 ACLVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFF 434
            A L  +T  ++L ++++VG+I+       IS +F+ +++LP+VGNAAEH  AI+ +++ ++D++LGVA+GS+ QIA+F+ P  VI+ WI+   + L F  LET              QDG +H+++G  LL  Y ++   FF
Sbjct:  267 AMLAIVTVFVSLCADYLVGSIDQLVEEVNISKTFVGLVILPVVGNAAEHVTAIVVSYRGQMDLALGVAIGSSIQIALFLAPFLVIVGWIISQPLTLYFESLETVILFVSVFLVNYLIQDGATHWLEGVQLLALYAIVVLAFF 408          
BLAST of DY258685 vs. ExPASy Swiss-Prot
Match: YFKE_BACSU (Putative cation exchanger yfkE OS=Bacillus subtilis GN=yfkE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.082e-21
Identity = 57/141 (40.43%), Postives = 81/141 (57.45%), Query Frame = 3
Query:   15 LVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFV 437
            L   T ++A +SE +V T    +  +G S  FI +I++ IVGNAAEHA AII AFKNK+DI++ +A+GS  QIA+FV P+ VI S     +M L F L E  +             DG S++ +G  LL  Y ++   FF+
Sbjct:  210 LFAATIVVAYISENLVHTFHSVAEQFGWSELFIGVIIVAIVGNAAEHASAIIMAFKNKMDIAVEIAVGSTLQIAMFVAPVLVICSIFFPTSMPLVFTLPELVAMVSAVLLMIAISNDGDSNWFEGATLLAAYVIMAIGFFL 350          
The following BLAST results are available for this feature:
BLAST of DY258685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CAX6_ARATH5.307e-3754.93Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]
CAX4_ORYSJ1.707e-3550.71Putative vacuolar cation/proton exchanger 4 OS=Ory... [more]
VCX1_YEAST5.881e-2839.35Vacuolar calcium ion transporter OS=Saccharomyces ... [more]
VCX1_SCHPO1.148e-2336.62Vacuolar calcium ion transporter OS=Schizosaccharo... [more]
YFKE_BACSU4.082e-2140.43Putative cation exchanger yfkE OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AB01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258685 ID=DY258685; Name=DY258685; organism=Citrus clementina; type=EST; length=1191bp
GTGGATTTGCTTGTCTTGTTGGGATGACTGCTATCATTGCTTTACTATCA
GAATTTGTAGTGGGCACAATTGAGGATGCTTCAAATTCTTGGGGGATTTC
TGTGAGCTTTATCAGCATTATCTTGCTACCAATTGTTGGAAATGCAGCTG
AACATGCAGGAGCAATCATTTTTGCTTTCAAAAACAAGTTGGACATTTCA
CTGGGTGTTGCGTTGGGTTCTGCAACTCAAATTGCCGTATTTGTGGTTCC
ATTGTGCGTGATTATTTCTTGGATTATGGGGATTACAATGGATCTTAACT
TCAATCTCCTTGAGACTGGCTCTCTTGCTCTAGCAATTATTGCCACAGCC
TTCACTCTACAGGATGGAACTTCTCATTACATGAAAGGATTTGTTCTTCT
GCTATGCTACTTTGTTATTGGAGCATGCTTTTTTGTATCCAACAGACCAC
TCGACTCCGACCAGAATGGGGTCAAAATGGGCCTTCAATCATCAACTGGA
ACAGTCCTCAGAGCATGATAAGACTAATTGGGCCTTCTGGGGTCAGACTC
TTCAATTCGTCATTGAAACTTTCAAATATAAGGTGCATTGCTAATTCTTT
CATTTGGCGTCGCCAGCTGGAATTTAGAAGCCGGGCATAGCATTTTACAT
GTCGAGAAAGTTTCCATGGATGCCTTCTCATTTGAGATGAAACATTTCAA
AGTGAATTGGTGCCATTGAAGCTTGATGAAGGCAGCGCAGGTTTAAGTAT
ATGTAATGTTCTAAAGATCTCTCTCAGATGGTTTTTTTTAACTGAGTGAA
AGTTTATTTCCTATGTCCGGATATGCATTTACTCTTCTTTTGAGTGATGG
TAATTTCTCGGCTCTTGGAACACCCTCCACATAAAAAAATGGGGAATTTT
TTGTCTTTGGGCTTGAATTAAAAAAAAAAAAAAAAAAAAAACCCCCCTTT
TCTGTGACAAAGTTTGGGTTTTTAAAAAAAGCATTGCTTTTCTAATTTTG
TTGCCAAGAAAAAGGGCCCCCATCCAGCCCAAAAAAAATTCCTTTATTTT
CCCCCCCCCCCCCGAAAATCCCCCCTTAGGGGGGGCCCCCAAAAATAAAG
GGGCCCAAACACCGTTTTTTCCTGGGCCACCCCCCCCGGGCCCCGGCCCT
TCCCCAAAAAACCTCCCCTAAAGTGGTTTTTCTTCTGTCCC
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