DY258713

Overview
NameDY258713
Unique NameDY258713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1104
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258713 vs. ExPASy Swiss-Prot
Match: NIP13_ORYSJ (Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.496e-22
Identity = 71/205 (34.63%), Postives = 98/205 (47.80%), Query Frame = 3
Query:  108 FSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIY 722
            FS+   +  +AE + T   +FAG  +A+A NK T      P     I I  G A+ V V    +ISG H+NPAVT   A  G+        Y  AQ+ GS  AS  L+ + GG                        TF L++ V   A D +  ++G +A +A+G  V  N+L AGP SG SMNPAR+ GPA+  G +   W+Y
Sbjct:   48 FSVQFAQKVIAEILGTFFLIFAGC-AAVAVNKRTGGTVTFPG----ICITWGLAVMVMVYSVGHISGAHLNPAVTLAFATCGRFPWRRVPAYAAAQVAGSAAASAALRALFGGAPEHFFGTAPAGSDVQSLAMEFIITFYLMFVVSGVATDNR--AIGELAGLAVGATVLVNVLFAGPISGASMNPARTIGPAIILGRYTGIWVY 245          
BLAST of DY258713 vs. ExPASy Swiss-Prot
Match: NIP61_ARATH (Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.954e-22
Identity = 71/200 (35.50%), Postives = 102/200 (51.00%), Query Frame = 3
Query:  138 AEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV-----TGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIY 722
            AEF+ TL+ +FAG  +AI   K   D A     L+  A   G A+ + +    +ISG H+NPAVT   A            Y  AQ++ S+ A+F LK V     +GG+ VPT                   +F L++ V A A D +  ++G +A IA+G  V  NIL AGP +  SMNP R+ GPA+A+ N++  W+Y
Sbjct:   84 AEFVGTLILIFAGTATAIVNQK--TDGA---ETLIGCAASAGLAVMIVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQVMASVSAAFALKAVFEPTMSGGVTVPT------VGLSQAFALEFIISFNLMFVVTAVATDTR--AVGELAGIAVGATVMLNILIAGPATSASMNPVRTLGPAIAANNYRAIWVY 270          
BLAST of DY258713 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.954e-22
Identity = 73/212 (34.43%), Postives = 109/212 (51.42%), Query Frame = 3
Query:  111 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQD-NWIYWV 728
            S    KA  AEF++TL+FVF G+GSA+ +          PS ++ I++  G A+         +SGGH+NPA+T  L +G QI++L  +FY +AQL+G+I  + +L  +        LAV   N                 TF L   V+++    +   +G+ A ++IG  V    L    F+G SMNPARSFGPAV    F   +W++WV
Sbjct:    7 SAAFLKAVFAEFLATLIFVFFGLGSALKWPSAM------PS-VLQISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAILYGLAPYNARSNLAVNALN--NNTTAGQAVVAEMILTFQLALCVFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVIMSRFSSAHWVFWV 208          
BLAST of DY258713 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.552e-22
Identity = 72/213 (33.80%), Postives = 112/213 (52.58%), Query Frame = 3
Query:  123 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGN---FQDNWIYWV 728
            ++A +AEF++T LF++  + + +  +K ++  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   IFY + Q LG+I  + ++K    GL +      +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS G A+       + D+WI+WV
Sbjct:   54 YRAGIAEFVATFLFLYITILTVMGVSKSSSKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWV 263          
BLAST of DY258713 vs. ExPASy Swiss-Prot
Match: NIP31_MAIZE (Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.333e-22
Identity = 71/200 (35.50%), Postives = 99/200 (49.50%), Query Frame = 3
Query:  138 AEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV-----TGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIY 722
            AEF+ T + +F    + I   K     A+ P G  A   C G A+   +    +ISG H+NP++T   A       L    Y   Q L S+ A+F LK V     +GG+ VP                    +F L++ V A A D +  ++G +A IA+G  V  NIL AGP +GGSMNP R+ GPAVA+GN++  WIY
Sbjct:   78 AEFVGTFILIFFATAAPIVNQKY--GGAISPFGNAA---CAGLAVATVILSTGHISGAHLNPSLTIAFAALRHFPWLQVPAYVAVQALASVCAAFALKGVFHPFLSGGVTVPDATVSTAQAFFTEFII----SFNLLFVVTAVATDTR--AVGELAGIAVGAAVTLNILVAGPTTGGSMNPVRTLGPAVAAGNYRQLWIY 266          
BLAST of DY258713 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 5.686e-22
Identity = 69/213 (32.39%), Postives = 111/213 (52.11%), Query Frame = 3
Query:  123 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG----LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGN---FQDNWIYWV 728
            ++A +AEF++T LF++  + + +   +  +D+     G+  +A   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY + Q LG+I  + ++K    G    L    +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS G A+   +   + D+WI+WV
Sbjct:   52 YRAGIAEFMATFLFLYITILTVMGLKR--SDSLCSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWV 261          
BLAST of DY258713 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 5.686e-22
Identity = 74/217 (34.10%), Postives = 110/217 (50.69%), Query Frame = 3
Query:  123 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK--------VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV---ASGNFQDNWIYWV 728
            ++A +AEFI+T LF++  V + +   +     A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY I Q LG+I  + ++K         + GG     H                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS G A+      ++ D+WI+WV
Sbjct:   52 YRAGIAEFIATFLFLYITVLTVMGVKRAPNMCA--SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHG----YTKGSGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWV 261          
BLAST of DY258713 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.426e-22
Identity = 71/216 (32.87%), Postives = 107/216 (49.54%), Query Frame = 3
Query:  123 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTH-----NXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKK----GSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASG-----NFQDNWIYWV 728
            ++A +AEF +TLL V   V + I   + + +     +G++ IA   G  +FV V   A ISGGH+NPAVTF + L  ++++     Y +AQ +G++  + L + + GG     H                       TF LVYTV+ +A DPK+      +  +AP+ IG  V    LA  P +G  +NPARS GPA+  G      +   WI+WV
Sbjct:   34 YRAAIAEFTATLLLVCISVSTVIGEKRQSGEGG---AGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVF-SATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWV 245          
BLAST of DY258713 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.654e-21
Identity = 74/217 (34.10%), Postives = 109/217 (50.23%), Query Frame = 3
Query:  123 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK--------VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGN---FQDNWIYWV 728
            ++A +AEFI+T LF++  V + +   +     A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY + Q LG+I  + ++K           GG  V  H                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS G A+       + D+WI+WV
Sbjct:   52 YRAGIAEFIATFLFLYVTVLTVMGVKRAPNMCA--SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQPGLYQTNGGGANVVAHG----YTKGSGLGAEIVGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWV 261          
BLAST of DY258713 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.654e-21
Identity = 73/217 (33.64%), Postives = 109/217 (50.23%), Query Frame = 3
Query:  123 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK--------VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGN---FQDNWIYWV 728
            ++A +AEFI+T LF++  V + +   +     A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY + Q LG+I  + ++K         + GG     H                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS G A+       + D+WI+WV
Sbjct:   51 YRAGIAEFIATFLFLYITVLTVMGVKRAPNMCA--SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHG----YTKGSGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWV 260          
The following BLAST results are available for this feature:
BLAST of DY258713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
NIP13_ORYSJ1.496e-2234.63Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica G... [more]
NIP61_ARATH1.954e-2235.50Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1... [more]
AQP5_SHEEP1.954e-2234.43Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
PIP11_ORYSJ2.552e-2233.80Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
NIP31_MAIZE3.333e-2235.50Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1[more]
PIP1_SOLLC5.686e-2232.39Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP14_ARATH5.686e-2234.10Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP28_ORYSJ7.426e-2232.87Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP15_ARATH1.654e-2134.10Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH1.654e-2133.64Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3AF06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258713 ID=DY258713; Name=DY258713; organism=Citrus clementina; type=EST; length=1104bp
CTTATCTTCTTCTTTTTAAGAAAGACTCGAGAGAGTTTTTTTTTCCCTAT
TCTCTAGCTCTTTCTTGATCAACAATGGCTATTGCCTTCGGCCGCTTCGA
TGATTCTTTCAGCTTAGGCTCCTTCAAGGCCTATCTTGCTGAGTTTATCT
CAACTTTGCTCTTTGTTTTCGCCGGCGTTGGCTCGGCCATTGCTTTCAAC
AAGATGACAGCAGATGCAGCACTTGATCCATCAGGGCTAGTAGCCATCGC
TATTTGCCATGGATTTGCTCTATTTGTCGCAGTTGCAATTGGTGCTAACA
TCTCAGGTGGCCACGTCAACCCAGCCGTCACCTTTGGATTGGCTCTTGGT
GGCCAAATCACCATCCTCACTGGCATCTTCTACTGGATTGCCCAACTTCT
TGGCTCTATTGTTGCCAGCTTCCTCCTCAAAGTTGTCACTGGAGGCTTGG
CAGTTCCTACCCACAATGTTGCTGCTGGAGTTGGAGCCATTGAAGGAGTT
GTGATGGAGATCATCATCACATTTGGTTTGGTCTACACGGTCTATGCCAC
GGCAGCTGACCCCAAGAAGGGATCATTGGGCACCATTGCACCCATTGCCA
TCGGTTTCATTGTCGGTGCCAACATCCTGGCCGCCGGCCCATTCTCCGGT
GGTTCCATGAACCCGGCCCGTTCCTTCGGGCCTGCCGTTGCCAGCGGCAA
CTTTCAGGACAACTGGATCTACTGGGTTGGCCCTCTCATTGGCGGCGGCC
TTGCCGGGCTTCTCTATGGCAATGTGTTCATGCACTCTGAACATGCACCC
CTATCTAATGACTAATTAATTAATAAGTAAAACTTTGTTTAAAAGTTAAT
TAAATCATTTTGATCCCCCGGCTTTTGGCTCTTTCTTTTTTGAAAAAAAG
AAAGGAAACCAGCTTTGGGCCTTTTCTCCTTTTCTTCTTTAGTTTCTTGG
GAACCCCTCTTTTTAAAACCATTTGGTTTTGGGAGGGGTGAAAAAAATCC
TTTGGTGGGGGGGGGTCCCATTTGGGGGCTTTTTCTCGAAAGAGAAAGGG
GAGGGGGAAGGGGGAAAAAAATGGTTGTAAAGCACCCCCCCTTTTATTTC
TTTT
back to top