DY258714
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 7.737e-28 Identity = 69/115 (60.00%), Postives = 88/115 (76.52%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 445 + K K K +SRSS+AG+QFPVGRI R+LK+ A RVGA A VYL+++LEYL AEVLELAGNA++D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K Sbjct: 10 RGKSKGSKS-VSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2AO_CHITH (Histone H2A, orphon OS=Chironomus thummi thummi PE=3 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 7.737e-28 Identity = 70/114 (61.40%), Postives = 86/114 (75.44%), Query Frame = 2 Query: 116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454 K K + SRSSRAG+QFPVGRIHR L+ A R+GA A VYLA+++EYL AE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K T+ Sbjct: 9 KVKAKAKSRSSRAGLQFPVGRIHRLLRKGHYAE-RIGAGAPVYLAAVMEYLGAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A_PARLI (Histone H2A OS=Paracentrotus lividus PE=3 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27 Identity = 68/113 (60.18%), Postives = 85/113 (75.22%), Query Frame = 2 Query: 116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 451 K + + SRSSRAG+QFPVGR+HR L+ A RVG A VY+A++LEYLTAE+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I L+ K T Sbjct: 9 KARTKAKSRSSRAGLQFPVGRVHRFLRKGNYAK-RVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A_CAEEL (Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=1 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27 Identity = 71/115 (61.74%), Postives = 85/115 (73.91%), Query Frame = 2 Query: 110 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 451 K K + SRSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYL AEVLELAGNA++D K RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I L+ K T Sbjct: 9 KAKTGGKAKSRSSRAGLQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKT 122
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27 Identity = 68/107 (63.55%), Postives = 84/107 (78.50%), Query Frame = 2 Query: 137 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454 SRSSRAG+QFPVGRIHR L+ A RVGA A VY+A++LEYL+AE+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I L+ K T+ Sbjct: 16 SRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTE 121
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A3_RAT (Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3) HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27 Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 454 K K + + SRSSRAG+QFPVGR+HR L+ + RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A3_MOUSE (Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=1 SV=3) HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27 Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 454 K K + + SRSSRAG+QFPVGR+HR L+ + RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A3_HUMAN (Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=1 SV=3) HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27 Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 454 K K + + SRSSRAG+QFPVGR+HR L+ + RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A3_CHICK (Histone H2A-III OS=Gallus gallus PE=1 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27 Identity = 71/117 (60.68%), Postives = 86/117 (73.50%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTT 451 K K + + SRSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGN ++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K T Sbjct: 6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNPARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A1E_RAT (Histone H2A type 1-E OS=Rattus norvegicus PE=1 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27 Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 454 K K + + +RSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122 The following BLAST results are available for this feature:
BLAST of DY258714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 242
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258714 ID=DY258714; Name=DY258714; organism=Citrus clementina; type=EST; length=1195bpback to top |