DY258714

Overview
NameDY258714
Unique NameDY258714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1195
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 7.737e-28
Identity = 69/115 (60.00%), Postives = 88/115 (76.52%), Query Frame = 2
Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 445
            + K K  K  +SRSS+AG+QFPVGRI R+LK+   A  RVGA A VYL+++LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct:   10 RGKSKGSKS-VSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2AO_CHITH (Histone H2A, orphon OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 7.737e-28
Identity = 70/114 (61.40%), Postives = 86/114 (75.44%), Query Frame = 2
Query:  116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            K K +  SRSSRAG+QFPVGRIHR L+    A  R+GA A VYLA+++EYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KVKAKAKSRSSRAGLQFPVGRIHRLLRKGHYAE-RIGAGAPVYLAAVMEYLGAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A_PARLI (Histone H2A OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27
Identity = 68/113 (60.18%), Postives = 85/113 (75.22%), Query Frame = 2
Query:  116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 451
            K + +  SRSSRAG+QFPVGR+HR L+    A  RVG  A VY+A++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K T
Sbjct:    9 KARTKAKSRSSRAGLQFPVGRVHRFLRKGNYAK-RVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A_CAEEL (Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27
Identity = 71/115 (61.74%), Postives = 85/115 (73.91%), Query Frame = 2
Query:  110 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 451
            K K   +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K T
Sbjct:    9 KAKTGGKAKSRSSRAGLQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKT 122          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27
Identity = 68/107 (63.55%), Postives = 84/107 (78.50%), Query Frame = 2
Query:  137 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            SRSSRAG+QFPVGRIHR L+    A  RVGA A VY+A++LEYL+AE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTE 121          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A3_RAT (Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2
Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 454
            K   K + +  SRSSRAG+QFPVGR+HR L+    +  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A3_MOUSE (Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2
Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 454
            K   K + +  SRSSRAG+QFPVGR+HR L+    +  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A3_HUMAN (Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2
Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 454
            K   K + +  SRSSRAG+QFPVGR+HR L+    +  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A3_CHICK (Histone H2A-III OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27
Identity = 71/117 (60.68%), Postives = 86/117 (73.50%), Query Frame = 2
Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTT 451
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGN ++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNPARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A1E_RAT (Histone H2A type 1-E OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2
Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 454
            K   K + +  +RSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122          
The following BLAST results are available for this feature:
BLAST of DY258714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
H2AXB_ORYSI7.737e-2860.00Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2AO_CHITH7.737e-2861.40Histone H2A, orphon OS=Chironomus thummi thummi PE... [more]
H2A_PARLI1.010e-2760.18Histone H2A OS=Paracentrotus lividus PE=3 SV=2[more]
H2A_CAEEL1.010e-2761.74Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=... [more]
H2A_ACRFO1.010e-2763.55Histone H2A OS=Acropora formosa PE=3 SV=2[more]
H2A3_RAT1.010e-2759.32Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3[more]
H2A3_MOUSE1.010e-2759.32Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=... [more]
H2A3_HUMAN1.010e-2759.32Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=... [more]
H2A3_CHICK1.010e-2760.68Histone H2A-III OS=Gallus gallus PE=1 SV=2[more]
H2A1E_RAT1.010e-2759.32Histone H2A type 1-E OS=Rattus norvegicus PE=1 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3AF07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258714 ID=DY258714; Name=DY258714; organism=Citrus clementina; type=EST; length=1195bp
AAATCTCTCTCTTCTTTTCTCTTCGGCTTCCAAGATTTTCAGGTGAGACA
TGGCGGGAAAAGGAGGGAAGGGTCTTTTAGCAGCGAAAACCACGGCTGGT
AACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTCG
TGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCAA
GGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGCT
TCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATGC
AAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTTG
CTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGCT
GGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTAC
CAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACTT
TGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTTT
GTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTTG
ACTCTTAGGTTTGTCCTCTGGATCTAATATACTCATGTTTGGAGTAGGAA
TGTTGTTCGTTATGTACTATTTTTGTCTTGTTTCTTTTTCTTTCTGTCAC
TGTTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCTGACATGATTATGAA
AGCAGCCATCATCTGTGTTTCTTTATAATTTAGGACTATTGCTCACTTTT
TACAAAATGTATTGTTGCTTTCCTGGGTGTTTGTAAATTGCCCTTTCCGG
ATCCTTAATGCGNAAGAAAAAAATAAAAAAAAAAAAAAAAAAAATAACGG
AAAAAAAAAAAAAACCAAAACCCCCATCTTTCTTTGAACAAAGTTTGGCT
ATTAAAAAAAAACCAATTGGCTTTTTAAATTTGTTTTGCCACGGAACAAG
GTTCCCTTATTCGATCCAAAAAAAAAATTCCTTTTTTTTTGCCCCCCCCC
CCCCGGAATTTCCCCCCTCAAAAGGGGAGGTCCCCAAATTACCAGGGGGC
CCCTAAAACCTTTGTTTTTCCCCCGGGCCACCCCCCCGGGCGCCCCCCGG
GCGCCCCCCCAACAAAATCTCCTCTTCAAAAATAATTGTCTACAA
back to top