DY258714

Overview
NameDY258714
Unique NameDY258714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1195
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A1D_HUMAN (Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2
Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 454
            K   K + +  +RSSRAG+QFPVGR+HR L+    +  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A_URECA (Histone H2A OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.320e-27
Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = 2
Query:  116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 445
            K K +  SRSSRAG+QFPVGRIHR L+    A  R+GA A VYLA+++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K
Sbjct:    9 KAKGKSKSRSSRAGLQFPVGRIHRLLRKGNYAE-RIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPK 118          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.320e-27
Identity = 69/113 (61.06%), Postives = 85/113 (75.22%), Query Frame = 2
Query:  122 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTKD 457
            KK+P+SRS +AG+QFPVGRI R+LK    A  RVG  A VYLA++LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K T +
Sbjct:   22 KKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 133          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.320e-27
Identity = 69/113 (61.06%), Postives = 85/113 (75.22%), Query Frame = 2
Query:  122 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTKD 457
            KK+P+SRS +AG+QFPVGRI R+LK    A  RVG  A VYLA++LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K T +
Sbjct:   22 KKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 133          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.320e-27
Identity = 67/112 (59.82%), Postives = 87/112 (77.68%), Query Frame = 2
Query:  122 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            KK+P+SRS ++G+QFPVGRI R+LK    +  RVG  A VYLA++LEYL AEVLELAGNA++D K  RI PRH+ LA+R DEEL TL+KG TIA GGV+P+I+  L+ K ++
Sbjct:   21 KKKPVSRSVKSGLQFPVGRIGRYLKKGRYSK-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSE 131          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.724e-27
Identity = 68/108 (62.96%), Postives = 83/108 (76.85%), Query Frame = 2
Query:  125 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 445
            K+  SRSS+ G+QFPVGRI R LK+   A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+ G TIA GGV+P+IH+ L+ K
Sbjct:   14 KKATSRSSKGGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPK 120          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 1.724e-27
Identity = 69/108 (63.89%), Postives = 83/108 (76.85%), Query Frame = 2
Query:  125 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINK 445
            K+ ISRSS+AG+QFPVGRI R LK+   A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K
Sbjct:   14 KKAISRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPK 120          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 2.251e-27
Identity = 67/113 (59.29%), Postives = 85/113 (75.22%), Query Frame = 2
Query:  116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 451
            K + +  +RSSRAG+QFPVGR+HR L+    A  RVG  A VY+A++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K T
Sbjct:    9 KARTKAKTRSSRAGLQFPVGRVHRFLRKGNYAK-RVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A_NEUCR (Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 2.251e-27
Identity = 69/115 (60.00%), Postives = 85/115 (73.91%), Query Frame = 2
Query:  110 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTT 451
            K    K   SRSS+AG+ FPVGR+HR L+    A  RVGA A VYLA++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K T
Sbjct:   10 KASGSKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 123          
BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A_NEOFI (Histone H2A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hta1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.251e-27
Identity = 69/115 (60.00%), Postives = 85/115 (73.91%), Query Frame = 2
Query:  110 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTT 451
            K    K   SRSS+AG+ FPVGR+HR L+    A  RVGA A VYLA++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K T
Sbjct:    9 KASGSKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 122          
The following BLAST results are available for this feature:
BLAST of DY258714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
H2A1D_HUMAN1.010e-2759.32Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD ... [more]
H2A_URECA1.320e-2763.06Histone H2A OS=Urechis caupo PE=3 SV=2[more]
H2A6_ORYSJ1.320e-2761.06Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]
H2A6_ORYSI1.320e-2761.06Probable histone H2A.6 OS=Oryza sativa subsp. indi... [more]
H2A4_ARATH1.320e-2759.82Probable histone H2A.4 OS=Arabidopsis thaliana GN=... [more]
H2A8_ORYSI1.724e-2762.96Probable histone H2A.8 OS=Oryza sativa subsp. indi... [more]
H2A7_WHEAT1.724e-2763.89Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A_STRPU2.251e-2759.29Histone H2A, embryonic OS=Strongylocentrotus purpu... [more]
H2A_NEUCR2.251e-2760.00Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3[more]
H2A_NEOFI2.251e-2760.00Histone H2A OS=Neosartorya fischeri (strain ATCC 1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AF07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258714 ID=DY258714; Name=DY258714; organism=Citrus clementina; type=EST; length=1195bp
AAATCTCTCTCTTCTTTTCTCTTCGGCTTCCAAGATTTTCAGGTGAGACA
TGGCGGGAAAAGGAGGGAAGGGTCTTTTAGCAGCGAAAACCACGGCTGGT
AACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTCG
TGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCAA
GGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGCT
TCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATGC
AAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTTG
CTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGCT
GGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTAC
CAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACTT
TGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTTT
GTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTTG
ACTCTTAGGTTTGTCCTCTGGATCTAATATACTCATGTTTGGAGTAGGAA
TGTTGTTCGTTATGTACTATTTTTGTCTTGTTTCTTTTTCTTTCTGTCAC
TGTTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCTGACATGATTATGAA
AGCAGCCATCATCTGTGTTTCTTTATAATTTAGGACTATTGCTCACTTTT
TACAAAATGTATTGTTGCTTTCCTGGGTGTTTGTAAATTGCCCTTTCCGG
ATCCTTAATGCGNAAGAAAAAAATAAAAAAAAAAAAAAAAAAAATAACGG
AAAAAAAAAAAAAACCAAAACCCCCATCTTTCTTTGAACAAAGTTTGGCT
ATTAAAAAAAAACCAATTGGCTTTTTAAATTTGTTTTGCCACGGAACAAG
GTTCCCTTATTCGATCCAAAAAAAAAATTCCTTTTTTTTTGCCCCCCCCC
CCCCGGAATTTCCCCCCTCAAAAGGGGAGGTCCCCAAATTACCAGGGGGC
CCCTAAAACCTTTGTTTTTCCCCCGGGCCACCCCCCCGGGCGCCCCCCGG
GCGCCCCCCCAACAAAATCTCCTCTTCAAAAATAATTGTCTACAA
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