DY258714 | Citrus Genome Database

Overview


Name	DY258714
Unique Name	DY258714
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1195

Libraries


Library Name	Type
AbsDev1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig1213	contig	Ccv1_Contig1213:1..1195.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.998e-29
Identity = 70/111 (63.06%), Postives = 86/111 (77.48%), Query Frame = 2

Query:  125 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            K+ +SRSS+AG+QFPVGRI R+LK    A  R+GA A VYLA++LEYLTAEVLELAGNA++D K  RI PRH+QLAIR DEEL  L+   TIA GGV+P+IH  L+ K +K
Sbjct:   12 KKAVSRSSKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSK 121

[Close]

BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 6.998e-29
Identity = 70/111 (63.06%), Postives = 86/111 (77.48%), Query Frame = 2

Query:  116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 445
            K K +  SRSSRAG+QFPVGR+HR L+    A+ RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K
Sbjct:    9 KSKSKAKSRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 118

[Close]

BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A_MYTGA (Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 9.139e-29
Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = 2

Query:  116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            K K +  SRSSRAG+QFPVGRIHR L+    A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121

[Close]

BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 9.139e-29
Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = 2

Query:  116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            K K +  SRSSRAG+QFPVGRIHR L+    A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121

[Close]

BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 9.139e-29
Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = 2

Query:  116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            K K +  SRSSRAG+QFPVGRIHR L+    A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121

[Close]

BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 9.139e-29
Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = 2

Query:  116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            K K +  SRSSRAG+QFPVGRIHR L+    A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121

[Close]

BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 1.194e-28
Identity = 70/115 (60.87%), Postives = 87/115 (75.65%), Query Frame = 2

Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 445
            K   K + +  +RSSRAG+QFPVGR+HR L+    AH RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K
Sbjct:    6 KAVSKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAH-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 119

[Close]

BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.559e-28
Identity = 69/111 (62.16%), Postives = 86/111 (77.48%), Query Frame = 2

Query:  125 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            K+ +SRS++AG+QFPVGRI R+LK    A  R+GA A VYLA++LEYLTAEVLELAGNA++D K  RI PRH+QLAIR DEEL  L+   TIA GGV+P+IH  L+ K +K
Sbjct:   12 KKAVSRSAKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSK 121

[Close]

BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 1.559e-28
Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = 2

Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122

[Close]

BLAST of DY258714 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.036e-28
Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = 2

Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 451
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T
Sbjct:    6 KTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121

The following BLAST results are available for this feature:

BLAST of DY258714 vs. ExPASy Swiss-Prot

BLAST of DY258714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242


Match Name	E-value	Identity	Description
H2A4_VOLCA	6.998e-29	63.06	Histone H2A-IV OS=Volvox carteri PE=3 SV=1	[more]
H2A4_PSAMI	6.998e-29	63.06	Late histone H2A.2.2 OS=Psammechinus miliaris PE=3...	[more]
H2A_MYTGA	9.139e-29	64.04	Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3	[more]
H2A_MYTED	9.139e-29	64.04	Histone H2A OS=Mytilus edulis PE=3 SV=3	[more]
H2A_MYTCH	9.139e-29	64.04	Histone H2A OS=Mytilus chilensis PE=3 SV=3	[more]
H2A_MYTCA	9.139e-29	64.04	Histone H2A OS=Mytilus californianus PE=3 SV=3	[more]
H2AX_XENLA	1.194e-28	60.87	Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3	[more]
H2A3_VOLCA	1.559e-28	62.16	Histone H2A-III OS=Volvox carteri PE=3 SV=1	[more]
H2A2B_HUMAN	1.559e-28	60.17	Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ...	[more]
H2AX_HUMAN	2.036e-28	61.54	Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAI3AF07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY258714 ID=DY258714; Name=DY258714; organism=Citrus clementina; type=EST; length=1195bp
AAATCTCTCTCTTCTTTTCTCTTCGGCTTCCAAGATTTTCAGGTGAGACA
TGGCGGGAAAAGGAGGGAAGGGTCTTTTAGCAGCGAAAACCACGGCTGGT
AACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTCG
TGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCAA
GGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGCT
TCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATGC
AAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTTG
CTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGCT
GGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTAC
CAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACTT
TGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTTT
GTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTTG
ACTCTTAGGTTTGTCCTCTGGATCTAATATACTCATGTTTGGAGTAGGAA
TGTTGTTCGTTATGTACTATTTTTGTCTTGTTTCTTTTTCTTTCTGTCAC
TGTTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCTGACATGATTATGAA
AGCAGCCATCATCTGTGTTTCTTTATAATTTAGGACTATTGCTCACTTTT
TACAAAATGTATTGTTGCTTTCCTGGGTGTTTGTAAATTGCCCTTTCCGG
ATCCTTAATGCGNAAGAAAAAAATAAAAAAAAAAAAAAAAAAAATAACGG
AAAAAAAAAAAAAACCAAAACCCCCATCTTTCTTTGAACAAAGTTTGGCT
ATTAAAAAAAAACCAATTGGCTTTTTAAATTTGTTTTGCCACGGAACAAG
GTTCCCTTATTCGATCCAAAAAAAAAATTCCTTTTTTTTTGCCCCCCCCC
CCCCGGAATTTCCCCCCTCAAAAGGGGAGGTCCCCAAATTACCAGGGGGC
CCCTAAAACCTTTGTTTTTCCCCCGGGCCACCCCCCCGGGCGCCCCCCGG
GCGCCCCCCCAACAAAATCTCCTCTTCAAAAATAATTGTCTACAA