DY258719

Overview
NameDY258719
Unique NameDY258719
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258719 vs. ExPASy Swiss-Prot
Match: CAX4_ARATH (Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 3.170e-46
Identity = 82/159 (51.57%), Postives = 118/159 (74.21%), Query Frame = 2
Query:   71 EAPEISKWESLIWLAIMTAWISILSQYVVDAIEGASASWNIPISFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPT 547
            E   I  W ++ WL IMT  +++LS Y+V  I+ A+ SW + + FI +ILLPIVGNAAEHA A++FA ++KLDI+LG+A+GS+TQI++F +P  V++ W MG  MDLNF L ETA   ++++V +  LQ+GTSNY KGL+L+LCY+++AA FFV   P+
Sbjct:  283 EGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPS 441          
BLAST of DY258719 vs. ExPASy Swiss-Prot
Match: CAX1C_ORYSJ (Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.077e-38
Identity = 76/145 (52.41%), Postives = 103/145 (71.03%), Query Frame = 2
Query:   98 SLIWLAIMTAWISILSQYVVDAIEGASASWNIPISFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFV 532
            +++WL  M    ++LS YVV  IE AS S  IP+ FIS+ILLPIVGNAAEHA AI+FA K+K+DISLG+ +GS+TQISM  +P  +++ W+   PMDL+F L ET +L + VI  AF LQ+   +Y KGL L+  Y+++A  FFV
Sbjct:  294 AMVWLIGMAVVTAMLSSYVVTTIEEASESMGIPVRFISIILLPIVGNAAEHAGAIIFAFKNKIDISLGITLGSATQISMLVVPVILIVSWVNAIPMDLDFNLLETGSLAMAVITTAFTLQDDKWHYLKGLNLVFSYIVIAVCFFV 438          
BLAST of DY258719 vs. ExPASy Swiss-Prot
Match: VCX1_YEAST (Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae GN=VCX1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.953e-33
Identity = 67/153 (43.79%), Postives = 105/153 (68.63%), Query Frame = 2
Query:   83 ISKWESLIWLAIMTAWISILSQYVVDAIEGASASWNIPISFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHED 541
            +S   SL+ L   T  IS  + ++V  I+    S  +  +FI +I++PIVGNAAEH ++++ AMKDK+D++LGVAIGSS Q+++F  PF V++GW++  PM LNF  FETATLFI V +  + + +G SN+ +G+M +  Y+++A +FF + D
Sbjct:  248 LSVKSSLVILLGTTVIISFCADFLVGTIDNVVESTGLSKTFIGLIVIPIVGNAAEHVTSVLVAMKDKMDLALGVAIGSSLQVALFVTPFMVLVGWMIDVPMTLNFSTFETATLFIAVFLSNYLILDGESNWLEGVMSLAMYILIAMAFFYYPD 400          
BLAST of DY258719 vs. ExPASy Swiss-Prot
Match: VCX1_SCHPO (Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe GN=vcx1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.094e-30
Identity = 59/146 (40.41%), Postives = 104/146 (71.23%), Query Frame = 2
Query:   98 SLIWLAIMTAWISILSQYVVDAIEGASASWNIPISFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVH 535
            S+  LAI+T ++S+ + Y+V +I+      NI  +F+ +++LP+VGNAAEH +AI+ + + ++D++LGVAIGSS QI++F  PF V++GWI+ +P+ L F+  ET  LF++V +V + +Q+G +++ +G+ L+  Y IV  +FF +
Sbjct:  265 SIAMLAIVTVFVSLCADYLVGSIDQLVEEVNISKTFVGLVILPVVGNAAEHVTAIVVSYRGQMDLALGVAIGSSIQIALFLAPFLVIVGWIISQPLTLYFESLETVILFVSVFLVNYLIQDGATHWLEGVQLLALYAIVVLAFFYY 410          
BLAST of DY258719 vs. ExPASy Swiss-Prot
Match: YFKE_BACSU (Putative cation exchanger yfkE OS=Bacillus subtilis GN=yfkE PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.655e-20
Identity = 56/154 (36.36%), Postives = 87/154 (56.49%), Query Frame = 2
Query:   71 EAPEISKWESLIWLAIMTAWISILSQYVVDAIEGASASWNIPISFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFV 532
            E PE S   + I L   T  ++ +S+ +V      +  +     FI VI++ IVGNAAEHASAI+ A K+K+DI++ +A+GS+ QI+MF  P  V+        M L F L E   +   V+++     +G SN+F+G  L+  Y+I+A  FF+
Sbjct:  197 EEPEWSGKVATIVLFAATIVVAYISENLVHTFHSVAEQFGWSELFIGVIIVAIVGNAAEHASAIIMAFKNKMDIAVEIAVGSTLQIAMFVAPVLVICSIFFPTSMPLVFTLPELVAMVSAVLLMIAISNDGDSNWFEGATLLAAYVIMAIGFFL 350          
The following BLAST results are available for this feature:
BLAST of DY258719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CAX4_ARATH3.170e-4651.57Vacuolar cation/proton exchanger 4 OS=Arabidopsis ... [more]
CAX1C_ORYSJ7.077e-3852.41Vacuolar cation/proton exchanger 1c OS=Oryza sativ... [more]
VCX1_YEAST8.953e-3343.79Vacuolar calcium ion transporter OS=Saccharomyces ... [more]
VCX1_SCHPO1.094e-3040.41Vacuolar calcium ion transporter OS=Schizosaccharo... [more]
YFKE_BACSU6.655e-2036.36Putative cation exchanger yfkE OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AG04FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258719 ID=DY258719; Name=DY258719; organism=Citrus clementina; type=EST; length=892bp
CTATCTGCGAACTTAGGATGAGAATCAGACTGGGAATGATGCAGATCATG
GTGGTAATCATGATGATAATGAAGCTCCAGAGATCTCTAAATGGGAATCA
TTGATTTGGCTTGCAATAATGACAGCTTGGATCTCTATCCTATCACAGTA
TGTAGTTGATGCCATAGAGGGAGCGTCGGCTTCATGGAACATACCGATTT
CGTTTATAAGTGTTATCTTGCTCCCAATTGTAGGGAATGCTGCGGAGCAT
GCCAGTGCTATTATGTTTGCCATGAAAGACAAGCTTGACATATCTTTGGG
AGTGGCAATAGGGTCATCGACACAGATATCTATGTTTGGGATCCCATTTT
GCGTGGTTATTGGGTGGATAATGGGTCGACCTATGGACTTAAACTTTCAA
CTTTTTGAGACGGCAACTCTTTTCATAACTGTTATAGTTGTGGCATTCTT
TCTGCAGGAAGGAACTTCTAATTACTTTAAAGGACTCATGCTGATTCTTT
GCTATCTGATAGTAGCTGCTAGTTTCTTTGTGCATGAAGATCCTACTCCA
GATGATAATCAAGTAAAAACTTAGTTCATGAAAGCAGCAAATCGGCTTAT
GAGATGTATTTCCTGAAGCTACGGATCAACTTGGAGGCTGCTGTATATAT
TTATATATTCAGCTTCGAAACGCAGACAAGCCATTATCTCGACTTCCCTA
GCTCTTGCTCAGTAACATATTGAGCGGGTTTCTTGCTGTTTTTTGTGCTC
TATCCTTTCAATACCTGCTTTGGTGCTAAATGCTTATGACGAGTAAGAAA
AATGTGTATATCACAGAGAAAAACGGTTCATTTCTCCTTGCCTTGTACCT
CTTTCTCAATTCCTTTTGAAGAGATTTTCCTTTTGTTGCTTC
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