DY258723

Overview
NameDY258723
Unique NameDY258723
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1138
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258723 vs. ExPASy Swiss-Prot
Match: GPX2_HUMAN (Glutathione peroxidase 2 OS=Homo sapiens GN=GPX2 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.039e-18
Identity = 61/182 (33.52%), Postives = 88/182 (48.35%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 755
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPCNQFG QE   N EI       R    ++  F +  K +VNG N  PV+ +LK        D                    V WNFEKFL+   G+   RY  T     IE DI++L+
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186          
BLAST of DY258723 vs. ExPASy Swiss-Prot
Match: GPX2_CEBAP (Glutathione peroxidase 2 OS=Cebus apella GN=GPX2 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.773e-18
Identity = 60/182 (32.97%), Postives = 87/182 (47.80%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSA-------------------GGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 755
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPCNQFG QE   N EI       R    ++  F +  K +VNG N  PV+ +LK                             V WNFEKFL+   G+   RY  T     IE DI++L+
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKFIIWSPVCRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186          
BLAST of DY258723 vs. ExPASy Swiss-Prot
Match: GPXC_BRUPA (Cuticular glutathione peroxidase OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.159e-18
Identity = 59/167 (35.33%), Postives = 83/167 (49.70%), Query Frame = 3
Query:  276 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVK---------------WNFEKFLVDKNGKVIERYPP 710
            T +++YDF V+ ++G    L++++ KVLLIVNVA+ C  T   Y + + + E        IL FPCNQF  QEP  N E       ++            IF K++VNG N  P+Y+FLK      +  + K               WNFEKFLVDK G+   R+ P
Sbjct:   38 TNQTVYDFQVQMLNGAQKSLAEYRNKVLLIVNVATYCAYT-MQYRDFNPILESNSNGTLNILGFPCNQFYLQEPAENHELLSGLKYVRPGHGWEPHKNMHIFGKLEVNGENDHPLYKFLKERCPPTVPVIGKRHQLIYDPIGTNDVIWNFEKFLVDKKGRPRYRFHP 203          
BLAST of DY258723 vs. ExPASy Swiss-Prot
Match: GPXC_BRUMA (Cuticular glutathione peroxidase OS=Brugia malayi PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.159e-18
Identity = 59/167 (35.33%), Postives = 83/167 (49.70%), Query Frame = 3
Query:  276 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVK---------------WNFEKFLVDKNGKVIERYPP 710
            T +++YDF V+ ++G    L++++ KVLLIVNVA+ C  T   Y + + + E        IL FPCNQF  QEP  N E       ++            IF K++VNG N  P+Y+FLK      +  + K               WNFEKFLVDK G+   R+ P
Sbjct:   38 TNQTVYDFQVQMLNGAQKSLAEYRNKVLLIVNVATYCAYT-MQYRDFNPILESNSNGTLNILGFPCNQFYLQEPAENHELLSGLKYVRPGHGWEPHKNMHIFGKLEVNGENDHPLYKFLKERCPPTVPVIGKRHQLIYDPIGTNDVIWNFEKFLVDKKGRPRYRFHP 203          
BLAST of DY258723 vs. ExPASy Swiss-Prot
Match: GPX5_CANFA (Epididymal secretory glutathione peroxidase OS=Canis familiaris GN=GPX5 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.738e-18
Identity = 62/174 (35.63%), Postives = 90/174 (51.72%), Query Frame = 3
Query:  285 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI----KEFACTR-FKAEFPIFDKVDVNGPNTAPVYQFLKSSA---GGFLGDL------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 743
            ++Y++    ++G + +   ++  K +L VNVA+ CGLT + Y EL+ L E+ K  G  +L FPCNQFG Q PG N EI    K     R +   F +F+K DVNG     V+ FLK S       LG              ++WNFEKFLV  +G  + R+   T    +++DI
Sbjct:   39 TIYEYEALTLNGNERIQFKQYPRKHVLFVNVATYCGLT-AQYPELNSLQEELKPLGLVVLGFPCNQFGKQGPGENSEILPGLKYVRPGRGYVPNFQLFEKGDVNGEKEQKVFTFLKLSCPHPSEVLGSFRHISWDPVKVHDIRWNFEKFLVGPDGVPVLRWFHRTPISTVKEDI 211          
BLAST of DY258723 vs. ExPASy Swiss-Prot
Match: GPX2_CALJA (Glutathione peroxidase 2 OS=Callithrix jacchus GN=GPX2 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 6.738e-18
Identity = 60/182 (32.97%), Postives = 88/182 (48.35%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 755
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPC+QFG QE   N EI       R    ++  F +  K +VNG N  PV+ +LK        D                    V WNFEKFL+   G+   RY  T     IE DI++L+
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCHQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186          
BLAST of DY258723 vs. ExPASy Swiss-Prot
Match: GPX2_MACFU (Glutathione peroxidase 2 OS=Macaca fuscata fuscata GN=GPX2 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.960e-17
Identity = 60/182 (32.97%), Postives = 87/182 (47.80%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 755
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPCNQFG QE   N EI       R    ++  F +  K +VNG N  PV+ +LK        D                    V WNFEKFL+    +   RY  T     IE DI++L+
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEVEPFRRYSRTFPTINIEPDIKRLL 186          
BLAST of DY258723 vs. ExPASy Swiss-Prot
Match: GPXC_WUCBA (Cuticular glutathione peroxidase OS=Wuchereria bancrofti PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.660e-16
Identity = 57/167 (34.13%), Postives = 81/167 (48.50%), Query Frame = 3
Query:  276 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVK---------------WNFEKFLVDKNGKVIERYPP 710
            T +++YDF  + ++G    L++++ KVLLIVNVA+ C  T   Y + + +          IL FPCNQF  QEP  N E       ++            IF K++VNG N  P+Y+FLK      +  + K               WNFEKFLVDK G+   R+ P
Sbjct:   38 TNQTVYDFHAQMLNGAQRSLTEYRNKVLLIVNVATYCAYT-MQYRDFNPILGSNSNGTLNILGFPCNQFYLQEPAENHELLNGLKYVRPGHGWEPHKNMHIFGKLEVNGENDHPLYKFLKERCPPTVPVIGKRHQLIYDPIGTNDVIWNFEKFLVDKKGRPRYRFHP 203          
BLAST of DY258723 vs. ExPASy Swiss-Prot
Match: GPX1_CEBAP (Glutathione peroxidase 1 OS=Cebus apella GN=GPX1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.076e-15
Identity = 59/187 (31.55%), Postives = 86/187 (45.99%), Query Frame = 3
Query:  270 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 755
            AA  +S+Y F+ + +  G+ V L   + K LLI NVAS  G T  +Y++++    +   +G  +L FPCN  G QE   N EI       R    F+  F +F+K +VNG     ++ FL+ +      D                    V WNFEKFLV  +G  + RY        IE DI+ L+
Sbjct:    8 AAAAQSVYAFSARQLAGGEPVSLGSLRCKGLLIENVASLUGTTVRDYTQMNEPQRRLGPRGLVVLGFPCNHSGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKGEVNGAGAHTLFAFLREALPAPSDDATALMIDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 194          
BLAST of DY258723 vs. ExPASy Swiss-Prot
Match: GPX1_CALJA (Glutathione peroxidase 1 OS=Callithrix jacchus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.076e-15
Identity = 59/187 (31.55%), Postives = 86/187 (45.99%), Query Frame = 3
Query:  270 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 755
            AA  +S+Y F+ + +  G+ V L   + K LLI NVAS  G T  +Y++++    +   +G  +L FPCN  G QE   N EI       R    F+  F +F+K +VNG     ++ FL+ +      D                    V WNFEKFLV  +G  + RY        IE DI+ L+
Sbjct:    8 AAAAQSVYAFSARQLAGGEPVSLGSLRCKGLLIENVASLUGTTVRDYTQMNEPQRRLGPRGLVVLGFPCNHSGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKGEVNGAGAHTLFAFLREALPAPSDDATALMIDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 194          
The following BLAST results are available for this feature:
BLAST of DY258723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX2_HUMAN1.039e-1833.52Glutathione peroxidase 2 OS=Homo sapiens GN=GPX2 P... [more]
GPX2_CEBAP1.773e-1832.97Glutathione peroxidase 2 OS=Cebus apella GN=GPX2 P... [more]
GPXC_BRUPA5.159e-1835.33Cuticular glutathione peroxidase OS=Brugia pahangi... [more]
GPXC_BRUMA5.159e-1835.33Cuticular glutathione peroxidase OS=Brugia malayi ... [more]
GPX5_CANFA6.738e-1835.63Epididymal secretory glutathione peroxidase OS=Can... [more]
GPX2_CALJA6.738e-1832.97Glutathione peroxidase 2 OS=Callithrix jacchus GN=... [more]
GPX2_MACFU1.960e-1732.97Glutathione peroxidase 2 OS=Macaca fuscata fuscata... [more]
GPXC_WUCBA1.660e-1634.13Cuticular glutathione peroxidase OS=Wuchereria ban... [more]
GPX1_CEBAP1.076e-1531.55Glutathione peroxidase 1 OS=Cebus apella GN=GPX1 P... [more]
GPX1_CALJA1.076e-1531.55Glutathione peroxidase 1 OS=Callithrix jacchus GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258723 ID=DY258723; Name=DY258723; organism=Citrus clementina; type=EST; length=1138bp
GATTGATTCACTTAAATTCCATCTCAATGGCTTCTTATTCGATGCCTTTC
TCTGCAGCTTTCTCCTCACCTTTACGGCATTTCACACAAAACAAAACATG
CCCTGCTGCATGGGCTTCATCAATGGCGGCTTCATGGACTCCTACTAATT
CAATCAAATCATCAATTGGGTCCGCTAAACCAGGCTTTCTTCAACATGGG
CTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAACGTCGTTC
CTTTGGTGTTCACGCTACAGCTGCTACTGAGAAGTCTTTATATGACTTCA
CCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGTTTAAGGGC
AAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTGACACCATC
TAATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGACTCAAGGAT
TTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAGAGCCTGGA
TCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAGGCAGAATT
TCCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGCTCCAGTTT
ACCAGTTTTTGAAGTCAAGTGCTGGGGGATTTTTAGGCGACCTTGTCAAG
TGGAACTTTGAGAAGTTCTTAGTGGACAAAAATGGTAAAGTCATCGAGAG
ATATCCACCAACTACCTCGCCTTTCCAAATTGAGAAGGACATCCAGAAGC
TTGTTGTGGCATGAATCTTGACTTGAGCTGCTTGGCCATGTCTCAGATGT
ATCGACGAGATAGAAAACGAATATATGTATATGTATATTTCTGAATCGGG
CATCACATAAATGAATTTTTCCCTGCCTCCCCTGAAATGTTGTAAGTTTT
TTAATTTCCAAAATATTTAAAAAATTGGTAATAATTTCCTTTGCCAATAA
AAAAAAAAAAAAAAAAAAAACCCCAACTTTCTTTGAAAAAATTTGGAATT
AAAAAAAAAAGCATTTGCTTAACAATTTTGGTTGCAAAAAAACAGGGGTC
CCTTACCCAGTCAAAAAAAAAAATACTTTATTTTGCCCCCCCCCCCCAAA
AAACCCCCCCAAAAAAAGGGAAATCCTAAATTAAAAAG
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