DY258723

Overview
NameDY258723
Unique NameDY258723
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1138
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1062 contig Ccv1_Contig1062:59..1194. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258723 vs. ExPASy Swiss-Prot
Match: GPWA_PSEWI (Glutathione peroxidase OS=Pseudomonas wisconsinensis GN=gpwA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.709e-14
Identity = 43/135 (31.85%), Postives = 70/135 (51.85%), Query Frame = 3 
Query:  318 GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSP 722
            G+++ L ++ GK L++VN AS CG TP  +  L  LY++YK Q  E+L  P + F  QE   + E        +   F + +   V+G N  P+++ L   +        +WNF K++VD+ GKV+  +   T P
Sbjct:   39 GENIELCQYAGKPLVVVNTASFCGFTP-QFKGLEALYQRYKDQELEVLGVPSDDF-RQESADSKETATVCYVNYGVTFAMTEPQPVSGANAIPLFKGLAEQS-----RQPRWNFFKYVVDRQGKVVASFSSLTKP 166
The following BLAST results are available for this feature:
BLAST of DY258723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPWA_PSEWI7.709e-1431.85Glutathione peroxidase OS=Pseudomonas wisconsinens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258723 ID=DY258723; Name=DY258723; organism=Citrus clementina; type=EST; length=1138bp
GATTGATTCACTTAAATTCCATCTCAATGGCTTCTTATTCGATGCCTTTC
TCTGCAGCTTTCTCCTCACCTTTACGGCATTTCACACAAAACAAAACATG
CCCTGCTGCATGGGCTTCATCAATGGCGGCTTCATGGACTCCTACTAATT
CAATCAAATCATCAATTGGGTCCGCTAAACCAGGCTTTCTTCAACATGGG
CTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAACGTCGTTC
CTTTGGTGTTCACGCTACAGCTGCTACTGAGAAGTCTTTATATGACTTCA
CCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGTTTAAGGGC
AAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTGACACCATC
TAATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGACTCAAGGAT
TTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAGAGCCTGGA
TCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAGGCAGAATT
TCCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGCTCCAGTTT
ACCAGTTTTTGAAGTCAAGTGCTGGGGGATTTTTAGGCGACCTTGTCAAG
TGGAACTTTGAGAAGTTCTTAGTGGACAAAAATGGTAAAGTCATCGAGAG
ATATCCACCAACTACCTCGCCTTTCCAAATTGAGAAGGACATCCAGAAGC
TTGTTGTGGCATGAATCTTGACTTGAGCTGCTTGGCCATGTCTCAGATGT
ATCGACGAGATAGAAAACGAATATATGTATATGTATATTTCTGAATCGGG
CATCACATAAATGAATTTTTCCCTGCCTCCCCTGAAATGTTGTAAGTTTT
TTAATTTCCAAAATATTTAAAAAATTGGTAATAATTTCCTTTGCCAATAA
AAAAAAAAAAAAAAAAAAAACCCCAACTTTCTTTGAAAAAATTTGGAATT
AAAAAAAAAAGCATTTGCTTAACAATTTTGGTTGCAAAAAAACAGGGGTC
CCTTACCCAGTCAAAAAAAAAAATACTTTATTTTGCCCCCCCCCCCCAAA
AAACCCCCCCAAAAAAAGGGAAATCCTAAATTAAAAAG
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